Wall clock time and date at job start Sat Apr 11 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47140 * 2 1 4 4 C 1.53000 * 109.47301 * 175.00017 * 3 2 1 5 5 C 1.52994 * 109.47496 * 185.00385 * 4 3 2 6 6 N 1.46494 * 109.47346 * 295.00302 * 3 2 1 7 7 C 1.46765 * 124.35470 * 119.99967 * 6 3 2 8 8 C 1.54831 * 105.49704 * 197.01816 * 7 6 3 9 9 H 1.08999 * 111.07622 * 216.48807 * 8 7 6 10 10 C 1.50698 * 111.01133 * 92.61336 * 8 7 6 11 11 O 1.21275 * 120.00527 * 6.33932 * 10 8 7 12 12 N 1.34777 * 119.99674 * 186.33343 * 10 8 7 13 13 C 1.46499 * 120.00190 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47303 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47144 * 55.00410 * 14 13 12 16 16 C 1.53003 * 109.47157 * 295.00141 * 14 13 12 17 17 C 1.53005 * 109.47064 * 175.00568 * 14 13 12 18 18 N 1.46495 * 109.46996 * 184.99917 * 17 14 13 19 19 C 1.36941 * 120.00001 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99695 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00067 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99941 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47036 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46821 * 120.00002 * 23 21 19 26 26 H 1.48501 * 109.47082 * 239.99845 * 23 21 19 27 27 C 1.54631 * 101.60220 * 334.56264 * 8 7 6 28 28 C 1.34418 * 124.34952 * 299.97586 * 6 3 2 29 29 O 1.21284 * 124.94191 * 359.57303 * 28 6 3 30 30 H 1.09005 * 109.46969 * 59.99646 * 1 2 3 31 31 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46634 * 299.99862 * 1 2 3 33 33 H 1.08999 * 109.47226 * 240.00438 * 2 1 3 34 34 H 1.09002 * 109.47418 * 120.00137 * 2 1 3 35 35 H 1.09003 * 109.46980 * 55.00324 * 3 2 1 36 36 H 1.08998 * 109.47058 * 305.00386 * 4 3 2 37 37 H 1.09001 * 109.46722 * 64.99929 * 4 3 2 38 38 H 1.08994 * 109.47413 * 180.02562 * 5 4 3 39 39 H 1.09004 * 109.46610 * 299.99846 * 5 4 3 40 40 H 1.08993 * 109.47422 * 59.99735 * 5 4 3 41 41 H 1.09001 * 110.23936 * 315.99466 * 7 6 3 42 42 H 1.08998 * 110.24401 * 77.90012 * 7 6 3 43 43 H 0.97005 * 119.99838 * 0.02562 * 12 10 8 44 44 H 1.08997 * 109.47626 * 300.00868 * 13 12 10 45 45 H 1.09003 * 109.46369 * 60.00624 * 13 12 10 46 46 H 1.09001 * 109.46674 * 60.00198 * 16 14 13 47 47 H 1.09003 * 109.46987 * 180.02562 * 16 14 13 48 48 H 1.09000 * 109.47312 * 300.00165 * 16 14 13 49 49 H 1.08998 * 109.46754 * 304.99922 * 17 14 13 50 50 H 1.08999 * 109.46808 * 64.99754 * 17 14 13 51 51 H 0.97005 * 120.00338 * 0.02562 * 18 17 14 52 52 H 0.97009 * 119.99630 * 180.02562 * 22 21 19 53 53 H 1.09002 * 110.48855 * 266.08223 * 27 8 7 54 54 H 1.08998 * 110.48570 * 143.57284 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 0.1257 5 6 4.0646 2.8850 0.2512 6 7 1.6525 2.0975 -1.2517 7 6 0.8076 3.2949 -1.3328 8 6 0.3180 3.3571 -2.8004 9 1 0.2612 4.3875 -3.1513 10 6 -1.0100 2.6622 -2.9568 11 8 -1.5990 2.2524 -1.9791 12 7 -1.5433 2.4961 -4.1834 13 6 -2.8340 1.8201 -4.3357 14 6 -3.2083 1.7633 -5.8181 15 1 -2.4016 1.2910 -6.3787 16 6 -3.4307 3.1833 -6.3427 17 6 -4.4927 0.9496 -5.9890 18 7 -4.7860 0.7941 -7.4158 19 6 -5.8948 0.0965 -7.8149 20 1 -6.5527 -0.3394 -7.0776 21 6 -6.1724 -0.0513 -9.1668 22 7 -5.3697 0.4787 -10.0653 23 14 -7.6845 -1.0036 -9.7112 24 1 -8.4165 -1.4953 -8.5164 25 1 -8.5714 -0.1137 -10.5029 26 1 -7.2680 -2.1581 -10.5471 27 6 1.4374 2.5833 -3.5347 28 6 2.0253 1.6794 -2.4736 29 8 2.7310 0.7179 -2.6934 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6054 1.9815 0.8419 36 1 3.8571 0.8800 1.0113 37 1 4.0029 0.9836 -0.7597 38 1 5.1508 2.8863 0.3403 39 1 3.7723 3.4493 -0.6344 40 1 3.6265 3.3457 1.1365 41 1 -0.0418 3.2036 -0.6559 42 1 1.3892 4.1841 -1.0896 43 1 -1.0721 2.8236 -4.9655 44 1 -2.7625 0.8069 -3.9403 45 1 -3.5992 2.3706 -3.7882 46 1 -2.5157 3.7630 -6.2209 47 1 -3.6978 3.1428 -7.3987 48 1 -4.2374 3.6556 -5.7821 49 1 -4.3632 -0.0331 -5.5355 50 1 -5.3188 1.4682 -5.5026 51 1 -4.1944 1.1847 -8.0780 52 1 -5.5640 0.3757 -11.0101 53 1 2.1938 3.2721 -3.9110 54 1 1.0209 1.9929 -4.3508 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267988718.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:35 Heat of formation + Delta-G solvation = -104.399021 kcal Electronic energy + Delta-G solvation = -30618.329389 eV Core-core repulsion = 26588.558711 eV Total energy + Delta-G solvation = -4029.770678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.05611 -40.38099 -38.28188 -37.62637 -36.55719 -35.95239 -34.12597 -33.02835 -32.25651 -31.51651 -28.65690 -27.90779 -27.47439 -26.89295 -24.75003 -23.52903 -22.97684 -22.90488 -21.55723 -20.88690 -19.84915 -19.24252 -18.43593 -17.83739 -17.26980 -16.93178 -16.55952 -16.37050 -16.11487 -15.65108 -15.46856 -15.40739 -15.31561 -15.12839 -14.72551 -14.64433 -14.28976 -14.01143 -13.92186 -13.82297 -13.65514 -13.54670 -13.44212 -13.21126 -12.96439 -12.85504 -12.81379 -12.52419 -12.49168 -12.17563 -12.13305 -12.03964 -11.96230 -11.90044 -11.79656 -11.76393 -11.68900 -11.65096 -10.96618 -10.81752 -10.59484 -10.05108 -9.59723 -9.00295 -7.96775 -5.24875 1.46849 1.47247 1.57437 1.60111 1.63182 2.05059 2.18939 2.55672 3.30743 3.35954 3.37056 3.70079 3.73971 3.75593 3.92884 3.98113 4.01563 4.09035 4.12880 4.32189 4.34061 4.40716 4.46366 4.54615 4.55444 4.58701 4.61820 4.71188 4.72851 4.77758 4.81652 4.88486 4.91321 4.94704 4.96866 5.01585 5.07245 5.10287 5.13103 5.16843 5.21872 5.33314 5.37269 5.39088 5.45185 5.49190 5.52197 5.74724 6.22883 6.26316 6.57240 7.22007 7.26647 7.33091 8.08342 8.32541 9.26761 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.001985 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.137625 B =14101.650191 C =14357.362597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.160 3.840 4 C -0.137 4.137 5 C -0.141 4.141 6 N -0.602 5.602 7 C 0.112 3.888 8 C -0.111 4.111 9 H 0.172 0.828 10 C 0.512 3.488 11 O -0.568 6.568 12 N -0.714 5.714 13 C 0.141 3.859 14 C -0.095 4.095 15 H 0.075 0.925 16 C -0.134 4.134 17 C 0.156 3.844 18 N -0.741 5.741 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.293 1.293 27 C -0.144 4.144 28 C 0.504 3.496 29 O -0.577 6.577 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.415 0.585 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.039 0.961 48 H 0.052 0.948 49 H 0.014 0.986 50 H 0.022 0.978 51 H 0.377 0.623 52 H 0.252 0.748 53 H 0.148 0.852 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.511 12.566 22.571 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.058 3.942 4 C -0.176 4.176 5 C -0.199 4.199 6 N -0.335 5.335 7 C -0.010 4.010 8 C -0.132 4.132 9 H 0.189 0.811 10 C 0.299 3.701 11 O -0.447 6.447 12 N -0.366 5.366 13 C 0.017 3.983 14 C -0.114 4.114 15 H 0.093 0.907 16 C -0.191 4.191 17 C 0.029 3.971 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.801 3.199 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.221 1.221 27 C -0.184 4.184 28 C 0.292 3.708 29 O -0.457 6.457 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.252 0.748 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.032 0.968 50 H 0.040 0.960 51 H 0.210 0.790 52 H 0.061 0.939 53 H 0.166 0.834 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.291 11.650 23.288 32.407 hybrid contribution -0.724 -0.867 -1.376 1.780 sum 18.567 10.784 21.912 30.678 Atomic orbital electron populations 1.21687 0.95444 1.00952 1.02133 1.21901 0.96138 0.97108 1.02357 1.21151 0.94943 0.92634 0.85516 1.21893 0.94342 0.98966 1.02365 1.21673 1.00948 0.95159 1.02097 1.48377 1.50122 1.29172 1.05819 1.22314 0.94960 0.87985 0.95733 1.22450 0.89850 1.03510 0.97439 0.81115 1.20884 0.87568 0.79018 0.82626 1.90698 1.63749 1.50967 1.39307 1.45893 1.22055 1.59492 1.09163 1.21056 0.85256 0.96873 0.95148 1.21333 0.97500 0.97524 0.95033 0.90691 1.21717 1.02196 0.94604 1.00593 1.20733 0.94912 0.96314 0.85165 1.42513 1.28872 1.64842 1.02214 1.19655 1.01593 1.25165 0.91371 0.90933 1.25542 1.02148 1.03008 0.96015 1.69807 1.40232 1.51455 1.00263 0.85090 0.79139 0.77672 0.77958 1.19283 1.21827 1.22054 1.22456 0.99160 0.99492 0.97254 1.21341 0.79517 0.84332 0.85572 1.90684 1.40376 1.30042 1.84602 0.93597 0.93871 0.91875 0.93666 0.89627 0.87398 0.89932 0.93267 0.92654 0.93012 0.91302 0.89524 0.86674 0.74823 0.93089 0.91462 0.90054 0.94136 0.92856 0.96764 0.95986 0.79045 0.93948 0.83441 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.80 71.98 0.71 -2.45 16 2 C -0.14 -2.69 5.36 30.60 0.16 -2.52 16 3 C 0.16 2.46 2.25 44.99 0.10 2.56 16 4 C -0.14 -2.01 5.36 30.59 0.16 -1.84 16 5 C -0.14 -1.48 9.80 71.98 0.71 -0.77 16 6 N -0.60 -9.52 1.74 -793.34 -1.38 -10.90 16 7 C 0.11 1.14 6.69 86.95 0.58 1.72 16 8 C -0.11 -1.03 3.56 -10.36 -0.04 -1.07 16 9 H 0.17 0.14 8.14 -2.39 -0.02 0.12 16 10 C 0.51 9.44 7.16 87.66 0.63 10.07 16 11 O -0.57 -15.05 14.17 -3.01 -0.04 -15.09 16 12 N -0.71 -12.77 5.01 -463.07 -2.32 -15.09 16 13 C 0.14 3.48 5.06 86.38 0.44 3.92 16 14 C -0.09 -2.71 2.46 -10.79 -0.03 -2.74 16 15 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 16 C -0.13 -3.50 8.94 71.98 0.64 -2.86 16 17 C 0.16 6.11 5.65 86.38 0.49 6.60 16 18 N -0.74 -37.23 5.33 -343.46 -1.83 -39.06 16 19 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 22 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 23 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 C -0.14 -1.67 6.38 30.59 0.20 -1.48 16 28 C 0.50 10.36 7.37 87.90 0.65 11.00 16 29 O -0.58 -17.22 15.02 -3.04 -0.05 -17.27 16 30 H 0.04 1.22 6.36 -2.38 -0.02 1.20 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 1.19 6.65 -2.39 -0.02 1.17 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.23 8.07 -2.39 -0.02 1.21 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.04 6.62 -2.39 -0.02 1.03 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.56 7.75 -2.38 -0.02 0.54 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.09 1.16 6.95 -2.39 -0.02 1.15 16 42 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.41 5.19 7.47 -92.70 -0.69 4.50 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 1.49 7.18 -2.39 -0.02 1.47 16 47 H 0.04 1.32 7.18 -2.39 -0.02 1.30 16 48 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.38 19.78 6.85 -92.70 -0.64 19.15 16 52 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 53 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.10 1.35 7.51 -2.39 -0.02 1.33 16 Total: -1.00 -78.06 423.41 2.95 -75.10 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.45 Total: 29.05 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.70 Total: 3.32 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -5.24 Total: -123.50 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.09 Total: -32.36 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.06 2.95 -75.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267988718.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.297 kcal (2) G-P(sol) polarization free energy of solvation -78.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds