Wall clock time and date at job start Sat Apr 11 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47046 * 2 1 4 4 C 1.53001 * 109.47144 * 175.00067 * 3 2 1 5 5 C 1.53001 * 109.47272 * 184.99823 * 4 3 2 6 6 N 1.46499 * 109.47145 * 294.99982 * 3 2 1 7 7 C 1.46761 * 124.35221 * 119.95532 * 6 3 2 8 8 C 1.54479 * 105.47513 * 197.03897 * 7 6 3 9 9 H 1.09007 * 110.99900 * 216.45058 * 8 7 6 10 10 C 1.50693 * 110.97342 * 92.69868 * 8 7 6 11 11 O 1.21287 * 119.99849 * 6.16939 * 10 8 7 12 12 N 1.34782 * 120.00376 * 186.16623 * 10 8 7 13 13 C 1.46498 * 119.99965 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46687 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.46955 * 305.00124 * 14 13 12 16 16 C 1.52997 * 109.47127 * 65.00113 * 14 13 12 17 17 C 1.52999 * 109.46626 * 184.99652 * 14 13 12 18 18 N 1.46504 * 109.46785 * 174.99920 * 17 14 13 19 19 C 1.36940 * 120.00031 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00005 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00097 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46755 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47294 * 119.99459 * 23 21 19 26 26 H 1.48499 * 109.46871 * 239.99955 * 23 21 19 27 27 C 1.54628 * 101.76421 * 334.57930 * 8 7 6 28 28 C 1.34425 * 124.35107 * 299.97861 * 6 3 2 29 29 O 1.21285 * 124.93867 * 359.52879 * 28 6 3 30 30 H 1.08997 * 109.47244 * 300.00370 * 1 2 3 31 31 H 1.09001 * 109.47385 * 60.00063 * 1 2 3 32 32 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46965 * 239.99881 * 2 1 3 34 34 H 1.09002 * 109.46876 * 120.00063 * 2 1 3 35 35 H 1.09000 * 109.47442 * 54.99980 * 3 2 1 36 36 H 1.09000 * 109.46945 * 304.99968 * 4 3 2 37 37 H 1.09005 * 109.47273 * 64.99596 * 4 3 2 38 38 H 1.09000 * 109.47254 * 299.99956 * 5 4 3 39 39 H 1.08999 * 109.46859 * 60.00013 * 5 4 3 40 40 H 1.08999 * 109.46780 * 179.97438 * 5 4 3 41 41 H 1.08999 * 110.24554 * 78.03455 * 7 6 3 42 42 H 1.08998 * 110.24273 * 316.03398 * 7 6 3 43 43 H 0.97004 * 119.99482 * 0.02562 * 12 10 8 44 44 H 1.08992 * 109.47311 * 60.00333 * 13 12 10 45 45 H 1.08997 * 109.46828 * 299.99977 * 13 12 10 46 46 H 1.09001 * 109.47289 * 299.99953 * 16 14 13 47 47 H 1.09004 * 109.47261 * 59.99697 * 16 14 13 48 48 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 49 49 H 1.08998 * 109.47903 * 294.99740 * 17 14 13 50 50 H 1.09002 * 109.47016 * 55.00506 * 17 14 13 51 51 H 0.96994 * 120.00002 * 0.02562 * 18 17 14 52 52 H 0.97004 * 119.99993 * 180.02562 * 22 21 19 53 53 H 1.09000 * 110.48750 * 143.48051 * 27 8 7 54 54 H 1.09002 * 110.48857 * 265.98865 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6524 2.0974 -1.2518 7 6 0.8068 3.2942 -1.3330 8 6 0.3186 3.3554 -2.7973 9 1 0.2610 4.3862 -3.1471 10 6 -1.0098 2.6610 -2.9525 11 8 -1.5971 2.2499 -1.9742 12 7 -1.5453 2.4968 -4.1785 13 6 -2.8370 1.8223 -4.3292 14 6 -3.2138 1.7675 -5.8111 15 1 -3.1982 2.7747 -6.2274 16 6 -2.2091 0.8902 -6.5607 17 6 -4.6171 1.1760 -5.9589 18 7 -5.0256 1.2334 -7.3646 19 6 -6.2535 0.7580 -7.7408 20 1 -6.9206 0.3404 -7.0012 21 6 -6.6403 0.8120 -9.0728 22 7 -5.8272 1.3204 -9.9742 23 14 -8.3156 0.1642 -9.5858 24 1 -9.0337 -0.3512 -8.3925 25 1 -9.1033 1.2618 -10.2022 26 1 -8.1415 -0.9337 -10.5705 27 6 1.4365 2.5825 -3.5349 28 6 2.0252 1.6793 -2.4737 29 8 2.7316 0.7181 -2.6934 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6054 1.9815 0.8418 36 1 3.8570 0.8800 1.0113 37 1 4.0029 0.9835 -0.7597 38 1 3.7723 3.4493 -0.6345 39 1 3.6263 3.3457 1.1364 40 1 5.1507 2.8862 0.3411 41 1 1.3882 4.1840 -1.0917 42 1 -0.0425 3.2026 -0.6559 43 1 -1.0754 2.8253 -4.9609 44 1 -3.6006 2.3727 -3.7799 45 1 -2.7656 0.8085 -3.9351 46 1 -1.2093 1.3115 -6.4553 47 1 -2.2246 -0.1171 -6.1443 48 1 -2.4778 0.8508 -7.6163 49 1 -4.6113 0.1387 -5.6243 50 1 -5.3187 1.7494 -5.3530 51 1 -4.4263 1.6081 -8.0289 52 1 -6.0977 1.3584 -10.9050 53 1 1.0181 1.9915 -4.3496 54 1 2.1911 3.2720 -3.9135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267988720.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:42 Heat of formation + Delta-G solvation = -104.261329 kcal Electronic energy + Delta-G solvation = -30665.872095 eV Core-core repulsion = 26636.107388 eV Total energy + Delta-G solvation = -4029.764707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.06523 -40.37743 -38.28482 -37.62120 -36.56453 -35.94971 -34.12498 -33.02517 -32.25021 -31.52350 -28.66205 -27.92892 -27.47642 -26.89013 -24.74976 -23.52236 -22.97236 -22.90240 -21.56694 -20.87245 -19.84513 -19.24036 -18.46995 -17.83229 -17.25584 -16.84643 -16.63043 -16.43831 -15.97847 -15.69767 -15.54434 -15.40462 -15.25894 -15.11412 -14.74033 -14.63317 -14.27954 -14.02247 -13.91658 -13.82046 -13.67235 -13.56734 -13.43994 -13.22443 -12.96419 -12.84240 -12.81377 -12.52653 -12.48997 -12.19191 -12.13490 -12.02939 -11.96613 -11.89935 -11.79395 -11.76083 -11.70035 -11.65436 -10.96143 -10.81604 -10.59020 -10.04967 -9.59431 -8.99746 -7.96304 -5.24329 1.47275 1.47655 1.57797 1.60535 1.63294 2.05266 2.18991 2.56098 3.31350 3.36148 3.37540 3.70048 3.73774 3.75825 3.93728 3.96746 4.01843 4.08404 4.13147 4.32493 4.33940 4.40378 4.46562 4.54886 4.55202 4.59060 4.61894 4.71345 4.72388 4.77527 4.81586 4.88376 4.91584 4.93553 4.96907 5.02023 5.04271 5.10416 5.12665 5.17037 5.21822 5.33038 5.37152 5.39084 5.43274 5.49668 5.51011 5.74826 6.23224 6.26777 6.57234 7.22380 7.26656 7.33631 8.08882 8.33155 9.27221 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.001950 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.291714 B =14355.542471 C =14574.548483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.159 3.841 4 C -0.137 4.137 5 C -0.142 4.142 6 N -0.602 5.602 7 C 0.112 3.888 8 C -0.112 4.112 9 H 0.170 0.830 10 C 0.512 3.488 11 O -0.568 6.568 12 N -0.714 5.714 13 C 0.141 3.859 14 C -0.093 4.093 15 H 0.083 0.917 16 C -0.136 4.136 17 C 0.156 3.844 18 N -0.741 5.741 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.293 1.293 27 C -0.143 4.143 28 C 0.504 3.496 29 O -0.576 6.576 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.415 0.585 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.042 0.958 49 H 0.016 0.984 50 H 0.021 0.979 51 H 0.377 0.623 52 H 0.252 0.748 53 H 0.101 0.899 54 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.381 9.038 22.158 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.057 3.943 4 C -0.175 4.175 5 C -0.199 4.199 6 N -0.335 5.335 7 C -0.010 4.010 8 C -0.134 4.134 9 H 0.187 0.813 10 C 0.299 3.701 11 O -0.447 6.447 12 N -0.366 5.366 13 C 0.016 3.984 14 C -0.112 4.112 15 H 0.102 0.898 16 C -0.193 4.193 17 C 0.029 3.971 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.801 3.199 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.221 1.221 27 C -0.183 4.183 28 C 0.293 3.707 29 O -0.456 6.456 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.034 0.966 50 H 0.039 0.961 51 H 0.210 0.790 52 H 0.060 0.940 53 H 0.120 0.880 54 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.155 8.135 22.878 32.204 hybrid contribution -0.855 -0.605 -1.337 1.698 sum 20.301 7.530 21.541 30.542 Atomic orbital electron populations 1.21686 0.95446 1.00963 1.02134 1.21897 0.96129 0.97060 1.02380 1.21151 0.94944 0.92666 0.85507 1.21893 0.94335 0.98928 1.02386 1.21677 1.00952 0.95198 1.02074 1.48379 1.50096 1.29169 1.05846 1.22249 0.94954 0.88032 0.95770 1.22393 0.89961 1.03515 0.97487 0.81279 1.20887 0.87583 0.79005 0.82629 1.90701 1.63858 1.50927 1.39236 1.45892 1.22064 1.59463 1.09179 1.21062 0.85105 0.97087 0.95114 1.21325 0.94686 1.00653 0.94522 0.89849 1.21727 0.98596 0.99161 0.99839 1.20732 0.93590 0.97208 0.85582 1.42510 1.17426 1.74200 1.04295 1.19656 0.93941 1.31575 0.92596 0.90926 1.25536 1.02092 1.02946 0.96119 1.69803 1.37824 1.52805 1.01322 0.85093 0.79705 0.77191 0.77888 1.19293 1.21855 1.22059 1.22457 0.99086 0.99489 0.97274 1.21324 0.79512 0.84319 0.85531 1.90684 1.40316 1.30038 1.84592 0.91976 0.93539 0.93826 0.93580 0.89651 0.87482 0.89937 0.93205 0.93018 0.91357 0.92645 0.86751 0.89537 0.74817 0.91802 0.92704 0.90441 0.93604 0.93918 0.96566 0.96098 0.79032 0.93953 0.88016 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.80 71.98 0.71 -2.40 16 2 C -0.14 -2.63 5.36 30.59 0.16 -2.46 16 3 C 0.16 2.42 2.26 44.99 0.10 2.52 16 4 C -0.14 -1.97 5.36 30.59 0.16 -1.81 16 5 C -0.14 -1.47 9.80 71.98 0.71 -0.76 16 6 N -0.60 -9.38 1.74 -794.05 -1.38 -10.76 16 7 C 0.11 1.14 6.68 86.83 0.58 1.72 16 8 C -0.11 -1.05 3.54 -10.48 -0.04 -1.08 16 9 H 0.17 0.20 8.14 -2.38 -0.02 0.18 16 10 C 0.51 9.44 7.16 87.65 0.63 10.07 16 11 O -0.57 -15.04 14.14 -3.05 -0.04 -15.08 16 12 N -0.71 -12.73 5.01 -463.06 -2.32 -15.05 16 13 C 0.14 3.46 5.07 86.38 0.44 3.89 16 14 C -0.09 -2.64 2.46 -10.79 -0.03 -2.67 16 15 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.14 -3.80 8.94 71.98 0.64 -3.16 16 17 C 0.16 6.07 5.65 86.38 0.49 6.56 16 18 N -0.74 -37.00 5.33 -343.44 -1.83 -38.83 16 19 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 20 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 22 N -0.97 -58.52 13.06 21.65 0.28 -58.23 16 23 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 C -0.14 -1.61 6.39 30.59 0.20 -1.42 16 28 C 0.50 10.13 7.37 87.90 0.65 10.78 16 29 O -0.58 -16.81 15.02 -3.05 -0.05 -16.86 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.21 6.34 -2.39 -0.02 1.20 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.19 6.65 -2.38 -0.02 1.17 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.04 6.62 -2.38 -0.02 1.02 16 38 H 0.05 0.55 7.75 -2.39 -0.02 0.53 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.09 1.17 6.94 -2.39 -0.02 1.16 16 43 H 0.41 5.17 7.47 -92.71 -0.69 4.47 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 1.60 7.18 -2.39 -0.02 1.58 16 47 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 49 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.38 19.66 6.85 -92.71 -0.63 19.02 16 52 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 53 H 0.10 1.29 7.51 -2.39 -0.02 1.27 16 54 H 0.15 0.74 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.32 423.33 2.95 -74.37 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.45 Total: 29.16 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.70 Total: 3.07 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.25 Total: -122.87 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.09 Total: -31.94 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -77.32 2.95 -74.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267988720.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.887 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds