Wall clock time and date at job start Sat Apr 11 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47472 * 2 1 4 4 C 1.53000 * 109.47249 * 239.99981 * 2 1 3 5 5 C 1.50708 * 109.47097 * 120.00051 * 2 1 3 6 6 O 1.21283 * 120.00041 * 359.97438 * 5 2 1 7 7 N 1.34777 * 120.00047 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00010 * 179.97438 * 7 5 2 9 9 C 1.50698 * 109.47041 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99808 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.46919 * 120.63255 * 179.97438 * 11 9 8 13 13 C 1.53195 * 108.89273 * 126.34238 * 12 11 9 14 14 C 1.53346 * 109.14901 * 54.57640 * 13 12 11 15 15 C 1.53004 * 109.41904 * 178.67276 * 14 13 12 16 16 C 1.52999 * 109.47001 * 295.13027 * 15 14 13 17 17 N 1.46500 * 109.46759 * 179.97438 * 16 15 14 18 18 C 1.36943 * 120.00115 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99715 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00166 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00053 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00062 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46661 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47240 * 120.00375 * 22 20 18 25 25 H 1.48497 * 109.47117 * 240.00808 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 14 13 12 27 27 C 1.46933 * 120.62741 * 0.02562 * 11 9 8 28 28 H 1.09007 * 109.47104 * 300.00478 * 1 2 3 29 29 H 1.08996 * 109.47039 * 59.99522 * 1 2 3 30 30 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.47036 * 299.99945 * 3 2 1 33 33 H 1.09001 * 109.47029 * 59.99948 * 3 2 1 34 34 H 1.09008 * 109.46732 * 299.99959 * 4 2 1 35 35 H 1.08997 * 109.47180 * 59.99693 * 4 2 1 36 36 H 1.08993 * 109.47589 * 180.02562 * 4 2 1 37 37 H 0.97002 * 119.99735 * 0.02562 * 7 5 2 38 38 H 1.09001 * 109.46466 * 60.00258 * 8 7 5 39 39 H 1.09001 * 109.47257 * 300.00468 * 8 7 5 40 40 H 1.09002 * 109.58751 * 246.20189 * 12 11 9 41 41 H 1.08996 * 109.58750 * 6.48373 * 12 11 9 42 42 H 1.08997 * 109.49914 * 174.65962 * 13 12 11 43 43 H 1.09002 * 109.49585 * 294.75599 * 13 12 11 44 44 H 1.09001 * 109.42242 * 58.75065 * 14 13 12 45 45 H 1.09001 * 109.46592 * 55.13132 * 15 14 13 46 46 H 1.08997 * 109.47133 * 175.12697 * 15 14 13 47 47 H 1.08991 * 109.47450 * 299.99495 * 16 15 14 48 48 H 1.08999 * 109.47142 * 60.00302 * 16 15 14 49 49 H 0.97005 * 120.00425 * 359.97438 * 17 16 15 50 50 H 0.96996 * 119.99916 * 180.02562 * 21 20 18 51 51 H 1.08994 * 109.50232 * 301.42239 * 26 14 13 52 52 H 1.09007 * 109.52628 * 181.33900 * 26 14 13 53 53 H 1.08994 * 109.58580 * 353.38021 * 27 11 9 54 54 H 1.09006 * 109.57831 * 113.65514 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2442 -1.1710 2.0291 7 7 3.3574 -0.8341 1.4436 8 6 3.8457 -1.5242 2.6400 9 6 5.3527 -1.5243 2.6400 10 8 5.9591 -0.9992 1.7303 11 7 6.0266 -2.1080 3.6507 12 6 7.4957 -2.1167 3.6644 13 6 7.9828 -1.5377 4.9965 14 6 7.3359 -2.3148 6.1493 15 6 7.8438 -1.7631 7.4830 16 6 9.3459 -2.0269 7.6051 17 7 9.8323 -1.4980 8.8818 18 6 11.1555 -1.6185 9.2134 19 1 11.8404 -2.1038 8.5339 20 6 11.6164 -1.1169 10.4228 21 7 10.7817 -0.5259 11.2512 22 14 13.4213 -1.2820 10.8754 23 1 14.1437 -1.9809 9.7822 24 1 14.0078 0.0680 11.0719 25 1 13.5471 -2.0641 12.1314 26 6 5.8146 -2.1632 6.0811 27 6 5.3059 -2.7486 4.7594 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 3.9877 -0.4654 0.8050 38 1 3.4819 -2.5517 2.6406 39 1 3.4828 -1.0098 3.5298 40 1 7.8561 -3.1398 3.5571 41 1 7.8724 -1.5085 2.8421 42 1 9.0675 -1.6265 5.0569 43 1 7.6991 -0.4873 5.0621 44 1 7.5996 -3.3694 6.0686 45 1 7.6586 -0.6898 7.5262 46 1 7.3206 -2.2553 8.3027 47 1 9.5311 -3.1001 7.5619 48 1 9.8691 -1.5345 6.7854 49 1 9.2172 -1.0617 9.4920 50 1 11.1039 -0.1751 12.0961 51 1 5.5513 -1.1070 6.1366 52 1 5.3575 -2.6964 6.9148 53 1 4.2378 -2.5554 4.6609 54 1 5.4862 -3.8235 4.7395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269943009.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:00 Heat of formation + Delta-G solvation = -110.176803 kcal Electronic energy + Delta-G solvation = -29596.829668 eV Core-core repulsion = 25566.808447 eV Total energy + Delta-G solvation = -4030.021221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70723 -40.88276 -39.07551 -36.93898 -36.65043 -35.62934 -35.10163 -33.02098 -32.26665 -30.30313 -28.98266 -28.24536 -27.89527 -26.52887 -24.71022 -24.45571 -23.43996 -22.60644 -21.40774 -20.83896 -19.91929 -19.13705 -18.28516 -17.82508 -17.16766 -17.07245 -16.68019 -16.50430 -16.14592 -15.80136 -15.51026 -15.34837 -15.26365 -15.06249 -14.74380 -14.68999 -14.59345 -14.29980 -14.03067 -13.99086 -13.49929 -13.32666 -13.22045 -13.07661 -13.04300 -12.89867 -12.87530 -12.63634 -12.51834 -12.27186 -12.19884 -12.08280 -11.97440 -11.91909 -11.87620 -11.63826 -11.36926 -11.28385 -11.00242 -10.86556 -10.80977 -10.29010 -9.73997 -8.99988 -7.96841 -5.25714 1.37757 1.46425 1.47356 1.55589 1.57556 1.64736 2.27084 2.55000 3.26782 3.37049 3.57623 3.69801 3.78956 3.81644 3.83831 3.90715 4.10331 4.18391 4.20791 4.23399 4.31445 4.34384 4.39998 4.50551 4.54811 4.65776 4.70152 4.70459 4.76568 4.81648 4.82344 4.89846 4.93321 4.94535 4.96839 5.00006 5.05347 5.07809 5.16947 5.19091 5.25003 5.30191 5.30967 5.35642 5.39620 5.48763 5.52916 5.56510 6.24903 6.26366 6.40322 6.92133 7.11476 7.31859 8.09573 8.31490 9.27101 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.001612 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.733540 B =17363.800778 C =17507.230726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.139 4.139 5 C 0.522 3.478 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.102 3.898 9 C 0.511 3.489 10 O -0.574 6.574 11 N -0.601 5.601 12 C 0.116 3.884 13 C -0.126 4.126 14 C -0.074 4.074 15 C -0.108 4.108 16 C 0.149 3.851 17 N -0.750 5.750 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.126 4.126 27 C 0.103 3.897 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.019 0.981 48 H 0.021 0.979 49 H 0.372 0.628 50 H 0.251 0.749 51 H 0.060 0.940 52 H 0.093 0.907 53 H 0.105 0.895 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.087 -2.641 -26.623 34.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.309 3.691 6 O -0.456 6.456 7 N -0.369 5.369 8 C -0.025 4.025 9 C 0.300 3.700 10 O -0.454 6.454 11 N -0.334 5.334 12 C -0.006 4.006 13 C -0.164 4.164 14 C -0.093 4.093 15 C -0.146 4.146 16 C 0.023 3.977 17 N -0.393 5.393 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.164 4.164 27 C -0.019 4.019 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.253 0.747 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.204 0.796 50 H 0.060 0.940 51 H 0.079 0.921 52 H 0.112 0.888 53 H 0.123 0.877 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.122 -2.779 -26.569 34.056 hybrid contribution 1.321 0.452 0.957 1.693 sum -19.801 -2.327 -25.612 32.457 Atomic orbital electron populations 1.21670 0.91730 1.02336 1.02641 1.20867 0.98113 0.97042 0.92599 1.21899 1.01565 0.92724 1.03626 1.21891 1.01584 1.00335 0.95872 1.21171 0.81297 0.78740 0.87847 1.90683 1.56135 1.50308 1.48456 1.45806 1.07640 1.58456 1.25016 1.21159 0.89938 1.00792 0.90641 1.20697 0.90222 0.77433 0.81688 1.90670 1.70518 1.47021 1.37219 1.48158 1.07366 1.55392 1.22438 1.21616 0.78699 1.02339 0.97964 1.22016 1.00996 0.99463 0.93936 1.21079 0.95350 1.00283 0.92627 1.21632 0.94485 1.00569 0.97928 1.20908 0.93922 0.95817 0.87047 1.42663 1.06980 1.70216 1.19410 1.19709 0.86982 1.30135 1.01015 0.90640 1.25600 1.02220 1.01761 0.97400 1.69825 1.35397 1.45725 1.11201 0.85055 0.79878 0.76942 0.77786 1.18968 1.22031 1.21881 1.21955 0.94670 1.01991 0.97821 1.22080 0.97195 0.98285 0.84292 0.93194 0.89618 0.92978 0.91766 0.89200 0.92788 0.92527 0.89246 0.91708 0.74691 0.87063 0.87703 0.89638 0.90280 0.90655 0.92879 0.89816 0.93153 0.92009 0.96254 0.96067 0.79617 0.93998 0.92100 0.88840 0.87693 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 7.76 71.98 0.56 -0.99 16 2 C -0.08 -1.01 0.87 -52.93 -0.05 -1.06 16 3 C -0.14 -1.34 8.37 71.98 0.60 -0.74 16 4 C -0.14 -1.21 8.37 71.98 0.60 -0.61 16 5 C 0.52 9.48 6.48 87.66 0.57 10.05 16 6 O -0.58 -14.47 15.98 -3.04 -0.05 -14.52 16 7 N -0.71 -11.65 5.31 -466.77 -2.48 -14.13 16 8 C 0.10 1.56 4.50 85.63 0.39 1.95 16 9 C 0.51 9.71 7.77 87.66 0.68 10.39 16 10 O -0.57 -14.44 15.08 -3.03 -0.05 -14.49 16 11 N -0.60 -10.11 2.97 -818.81 -2.43 -12.55 16 12 C 0.12 2.18 6.42 86.36 0.55 2.74 16 13 C -0.13 -2.74 5.16 30.78 0.16 -2.58 16 14 C -0.07 -1.56 2.15 -10.66 -0.02 -1.58 16 15 C -0.11 -3.22 4.80 30.60 0.15 -3.07 16 16 C 0.15 5.81 6.02 86.38 0.52 6.33 16 17 N -0.75 -38.71 5.60 -343.46 -1.92 -40.63 16 18 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 22 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 C -0.13 -1.99 5.37 30.69 0.16 -1.82 16 27 C 0.10 1.23 6.34 86.38 0.55 1.78 16 28 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.06 0.60 7.57 -2.39 -0.02 0.58 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.54 7.56 -2.39 -0.02 0.53 16 37 H 0.41 6.43 6.27 -92.71 -0.58 5.85 16 38 H 0.11 1.45 7.94 -2.39 -0.02 1.43 16 39 H 0.11 1.53 7.69 -2.39 -0.02 1.51 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.73 7.00 -2.39 -0.02 1.71 16 42 H 0.07 1.79 6.52 -2.39 -0.02 1.78 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.02 0.83 6.53 -2.39 -0.02 0.82 16 49 H 0.37 20.43 7.67 -92.70 -0.71 19.72 16 50 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 51 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 53 H 0.10 0.88 5.93 -2.39 -0.01 0.87 16 54 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -74.45 421.78 1.69 -72.76 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.41 Total: 31.32 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.73 Total: 3.58 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -6.56 Total: -127.11 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.09 Total: -29.00 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.45 1.69 -72.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269943009.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.417 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds