Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47166 * 2 1 4 4 C 1.53007 * 109.47455 * 240.00303 * 2 1 3 5 5 C 1.50706 * 109.47498 * 119.99973 * 2 1 3 6 6 O 1.21282 * 119.99236 * 0.02562 * 5 2 1 7 7 N 1.34767 * 120.00262 * 179.97438 * 5 2 1 8 8 C 1.46499 * 119.99958 * 180.02562 * 7 5 2 9 9 C 1.53007 * 109.47225 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47023 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46828 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00382 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.47028 * 125.64376 * 0.02562 * 13 11 10 15 15 C 1.54323 * 107.26890 * 181.01498 * 14 13 11 16 16 C 1.55158 * 102.94316 * 22.19439 * 15 14 13 17 17 H 1.08996 * 111.00437 * 82.61034 * 16 15 14 18 18 C 1.53001 * 111.00640 * 206.42094 * 16 15 14 19 19 N 1.46490 * 109.47264 * 293.54603 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.47422 * 125.65211 * 179.97438 * 13 11 10 29 29 H 1.08997 * 109.47341 * 299.99611 * 1 2 3 30 30 H 1.09004 * 109.46973 * 59.99905 * 1 2 3 31 31 H 1.09002 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47481 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47370 * 300.00347 * 3 2 1 34 34 H 1.09009 * 109.47002 * 60.00152 * 3 2 1 35 35 H 1.09002 * 109.46482 * 300.00076 * 4 2 1 36 36 H 1.08998 * 109.46795 * 59.99828 * 4 2 1 37 37 H 1.09003 * 109.46808 * 180.02562 * 4 2 1 38 38 H 0.96998 * 120.00125 * 0.02562 * 7 5 2 39 39 H 1.09003 * 109.47224 * 60.00485 * 8 7 5 40 40 H 1.09000 * 109.47029 * 299.99920 * 8 7 5 41 41 H 1.09003 * 109.46844 * 59.99982 * 9 8 7 42 42 H 1.09000 * 109.46831 * 299.99771 * 9 8 7 43 43 H 1.09002 * 109.46920 * 59.99923 * 10 9 8 44 44 H 1.08997 * 109.47332 * 300.00084 * 10 9 8 45 45 H 1.08999 * 109.87792 * 61.60171 * 14 13 11 46 46 H 1.08993 * 110.01543 * 300.50340 * 14 13 11 47 47 H 1.09000 * 110.72598 * 263.83374 * 15 14 13 48 48 H 1.08998 * 110.72391 * 140.55728 * 15 14 13 49 49 H 1.09003 * 109.46836 * 173.54310 * 18 16 15 50 50 H 1.08999 * 109.47071 * 53.55349 * 18 16 15 51 51 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 52 52 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 53 53 H 1.08997 * 110.36669 * 37.07965 * 28 13 11 54 54 H 1.08994 * 110.36588 * 274.75708 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0285 7 7 3.3574 -0.8340 1.4435 8 6 3.8457 -1.5251 2.6393 9 6 5.3758 -1.5250 2.6394 10 6 5.8858 -2.2462 3.8887 11 6 7.3927 -2.2466 3.8884 12 8 7.9992 -1.7222 2.9784 13 7 8.0667 -2.8307 4.8989 14 6 7.4604 -3.5010 6.0586 15 6 8.6138 -3.9913 6.9590 16 6 9.7942 -3.0749 6.5416 17 1 9.7457 -2.1159 7.0573 18 6 11.1377 -3.7622 6.7934 19 7 11.3350 -3.9355 8.2346 20 6 12.4751 -4.5324 8.7028 21 1 13.2289 -4.8751 8.0095 22 6 12.6618 -4.6971 10.0684 23 7 11.7428 -4.2799 10.9133 24 14 14.2173 -5.5107 10.7070 25 1 14.1736 -5.5666 12.1903 26 1 14.3141 -6.8891 10.1629 27 1 15.4005 -4.7240 10.2755 28 6 9.5337 -2.9042 5.0241 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1301 -0.7215 -1.2490 38 1 3.9877 -0.4654 0.8050 39 1 3.4822 -2.5527 2.6391 40 1 3.4827 -1.0114 3.5295 41 1 5.7390 -0.4972 2.6399 42 1 5.7391 -2.0384 1.7492 43 1 5.5224 -3.2739 3.8887 44 1 5.5224 -1.7324 4.7786 45 1 6.8635 -4.3501 5.7256 46 1 6.8329 -2.7999 6.6088 47 1 8.8458 -5.0364 6.7540 48 1 8.3687 -3.8490 8.0115 49 1 11.9417 -3.1480 6.3879 50 1 11.1442 -4.7371 6.3059 51 1 10.6578 -3.6281 8.8574 52 1 10.9352 -3.8571 10.5817 53 1 9.9919 -1.9839 4.6618 54 1 9.9188 -3.7627 4.4741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690727898.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -112.344631 kcal Electronic energy + Delta-G solvation = -28793.301556 eV Core-core repulsion = 24763.186330 eV Total energy + Delta-G solvation = -4030.115225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30955 -41.09038 -39.05026 -36.94123 -36.72614 -36.49439 -34.17891 -33.53021 -31.71640 -30.34908 -28.65682 -28.23295 -27.89211 -26.59814 -24.85138 -24.15937 -23.59844 -22.66190 -21.44254 -20.45518 -19.97095 -19.37536 -18.29030 -17.73081 -17.60631 -17.17994 -16.99023 -16.37985 -16.34762 -15.90975 -15.70717 -15.44250 -15.10082 -15.07023 -14.86179 -14.72830 -14.43819 -14.03045 -13.92178 -13.80149 -13.36869 -13.26197 -13.20100 -13.08098 -13.04119 -12.86723 -12.79518 -12.64060 -12.58568 -12.50795 -12.21104 -11.95154 -11.90840 -11.89135 -11.86124 -11.85294 -11.70846 -11.27367 -10.99775 -10.92969 -10.71205 -10.12156 -9.73082 -9.11634 -8.40020 -5.34063 1.56374 1.59679 1.61139 1.69011 1.84226 1.85769 2.24067 2.71083 3.26555 3.39744 3.56881 3.57557 3.60695 3.78143 3.82250 3.91072 3.97272 3.97728 4.08322 4.20224 4.24302 4.29671 4.33383 4.46213 4.49282 4.54456 4.61908 4.67630 4.70326 4.70815 4.73783 4.78762 4.81100 4.91634 4.93567 4.93717 4.98453 4.99897 5.08169 5.12723 5.14296 5.20604 5.24402 5.31417 5.32005 5.32358 5.43959 5.58177 6.47322 6.50626 6.50875 7.06758 7.09375 7.21441 7.99642 8.10144 9.12274 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.040366 B = 0.001385 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.488646 B =20212.166807 C =20577.808850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.515 3.485 6 O -0.586 6.586 7 N -0.719 5.719 8 C 0.122 3.878 9 C -0.104 4.104 10 C -0.126 4.126 11 C 0.523 3.477 12 O -0.586 6.586 13 N -0.619 5.619 14 C 0.105 3.895 15 C -0.119 4.119 16 C -0.098 4.098 17 H 0.077 0.923 18 C 0.169 3.831 19 N -0.752 5.752 20 C -0.339 4.339 21 H 0.064 0.936 22 C -0.100 4.100 23 N -0.973 5.973 24 Si 1.127 2.873 25 H -0.292 1.292 26 H -0.277 1.277 27 H -0.279 1.279 28 C 0.119 3.881 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.016 0.984 50 H 0.024 0.976 51 H 0.363 0.637 52 H 0.245 0.755 53 H 0.068 0.932 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 8.493 -24.837 34.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.303 3.697 6 O -0.466 6.466 7 N -0.371 5.371 8 C -0.001 4.001 9 C -0.142 4.142 10 C -0.166 4.166 11 C 0.314 3.686 12 O -0.467 6.467 13 N -0.352 5.352 14 C -0.017 4.017 15 C -0.157 4.157 16 C -0.118 4.118 17 H 0.095 0.905 18 C 0.043 3.957 19 N -0.397 5.397 20 C -0.470 4.470 21 H 0.082 0.918 22 C -0.292 4.292 23 N -0.621 5.621 24 Si 0.951 3.049 25 H -0.218 1.218 26 H -0.203 1.203 27 H -0.206 1.206 28 C -0.004 4.004 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.034 0.966 50 H 0.042 0.958 51 H 0.196 0.804 52 H 0.056 0.944 53 H 0.086 0.914 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.329 7.909 -23.625 32.797 hybrid contribution -0.435 0.654 -1.010 1.279 sum -21.764 8.563 -24.636 33.969 Atomic orbital electron populations 1.21672 0.92430 1.02031 1.02429 1.20866 0.97750 0.97289 0.92852 1.21890 1.01941 0.92439 1.03385 1.21889 1.01944 1.00062 0.95731 1.21191 0.82105 0.78768 0.87639 1.90680 1.56523 1.50591 1.48839 1.45969 1.07055 1.58352 1.25753 1.21297 0.93422 0.97512 0.87899 1.21386 0.92914 1.01917 0.97985 1.21570 0.88660 1.05079 1.01291 1.20986 0.91335 0.76432 0.79840 1.90686 1.71666 1.47349 1.36993 1.48656 1.07127 1.56123 1.23312 1.22223 0.95836 0.97935 0.85696 1.22590 0.93606 0.99485 1.00056 1.22362 0.94931 0.99452 0.95053 0.90508 1.20574 0.94138 0.96658 0.84370 1.42455 1.21694 1.73122 1.02435 1.20389 0.98259 1.34463 0.93907 0.91759 1.27163 1.07170 1.02330 0.92500 1.70999 1.10117 1.44762 1.36203 0.82641 0.71388 0.75645 0.75198 1.21797 1.20345 1.20570 1.22026 0.81280 1.01854 0.95243 0.93440 0.89739 0.93399 0.90974 0.89496 0.93044 0.92990 0.89505 0.90961 0.75013 0.91550 0.91691 0.90981 0.90816 0.86356 0.86579 0.88704 0.89129 0.90940 0.90241 0.96600 0.95780 0.80416 0.94426 0.91390 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 7.76 71.98 0.56 -1.00 16 2 C -0.08 -0.89 0.87 -52.92 -0.05 -0.94 16 3 C -0.14 -0.96 8.37 71.98 0.60 -0.36 16 4 C -0.14 -0.94 8.37 71.98 0.60 -0.34 16 5 C 0.52 8.74 6.48 87.66 0.57 9.31 16 6 O -0.59 -15.24 15.98 -3.04 -0.05 -15.29 16 7 N -0.72 -8.96 5.34 -463.05 -2.47 -11.43 16 8 C 0.12 1.59 5.67 86.38 0.49 2.08 16 9 C -0.10 -1.33 4.62 30.60 0.14 -1.18 16 10 C -0.13 -1.65 4.89 29.85 0.15 -1.50 16 11 C 0.52 11.80 7.85 87.66 0.69 12.48 16 12 O -0.59 -17.82 16.24 -3.04 -0.05 -17.87 16 13 N -0.62 -14.02 3.33 -811.80 -2.70 -16.72 16 14 C 0.10 1.89 6.49 86.73 0.56 2.45 16 15 C -0.12 -3.01 6.13 31.78 0.19 -2.82 16 16 C -0.10 -2.93 3.10 -9.40 -0.03 -2.96 16 17 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 18 C 0.17 6.60 5.71 86.38 0.49 7.09 16 19 N -0.75 -37.13 5.45 -343.47 -1.87 -39.00 16 20 C -0.34 -18.98 9.99 84.03 0.84 -18.14 16 21 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 22 C -0.10 -5.75 5.50 84.86 0.47 -5.28 16 23 N -0.97 -59.86 13.70 21.65 0.30 -59.56 16 24 Si 1.13 51.35 29.92 68.60 2.05 53.40 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.12 3.21 6.38 86.86 0.55 3.76 16 29 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 32 H 0.07 0.34 7.56 -2.39 -0.02 0.32 16 33 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.07 0.33 7.56 -2.39 -0.02 0.31 16 38 H 0.41 3.17 7.31 -92.71 -0.68 2.49 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 42 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.95 8.01 -2.39 -0.02 1.93 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 51 H 0.36 18.26 6.37 -92.71 -0.59 17.67 16 52 H 0.25 14.91 6.77 -92.71 -0.63 14.28 16 53 H 0.07 1.95 8.04 -2.39 -0.02 1.94 16 54 H 0.07 1.88 8.04 -2.39 -0.02 1.87 16 Total: -1.00 -78.27 431.43 1.78 -76.49 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -0.26 Total: 27.33 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.83 Total: 2.65 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -6.75 Total: -126.71 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.10 Total: -33.16 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.05 Total: 53.40 kcal Total: -78.27 1.78 -76.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690727898.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.854 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds