Wall clock time and date at job start Sat Apr 11 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46923 * 2 1 4 4 C 1.53004 * 109.46852 * 119.99697 * 2 1 3 5 5 C 1.50697 * 109.46921 * 65.00353 * 4 2 1 6 6 O 1.21281 * 120.00242 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99971 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00035 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47086 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47023 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00242 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00207 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47257 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.01952 * 306.39167 * 14 13 12 16 16 C 1.53879 * 110.03196 * 67.83445 * 14 13 12 17 17 C 1.54267 * 106.60134 * 119.28084 * 16 14 13 18 18 C 1.54893 * 104.19282 * 23.60896 * 17 16 14 19 19 H 1.09003 * 110.91041 * 80.44593 * 18 17 16 20 20 N 1.46499 * 110.75633 * 203.74048 * 18 17 16 21 21 C 1.36935 * 119.99938 * 268.33095 * 20 18 17 22 22 H 1.08000 * 120.00518 * 359.72965 * 21 20 18 23 23 C 1.38817 * 119.99990 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99869 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99909 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47361 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46860 * 120.00310 * 25 23 21 28 28 H 1.48500 * 109.47264 * 240.00123 * 25 23 21 29 29 C 1.54270 * 110.03237 * 184.99531 * 14 13 12 30 30 H 1.09000 * 109.47332 * 60.00422 * 1 2 3 31 31 H 1.09006 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47361 * 299.99893 * 1 2 3 33 33 H 1.08990 * 109.47148 * 239.99735 * 2 1 3 34 34 H 1.08998 * 109.47292 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47266 * 299.99852 * 3 2 1 36 36 H 1.09003 * 109.47756 * 59.99914 * 3 2 1 37 37 H 1.09003 * 109.47297 * 305.00008 * 4 2 1 38 38 H 1.08999 * 109.46855 * 185.00411 * 4 2 1 39 39 H 0.97005 * 119.99572 * 0.02562 * 7 5 4 40 40 H 1.08999 * 109.46650 * 60.00617 * 8 7 5 41 41 H 1.08991 * 109.47455 * 300.00060 * 8 7 5 42 42 H 1.08999 * 109.46495 * 60.00075 * 9 8 7 43 43 H 1.08999 * 109.47111 * 300.00740 * 9 8 7 44 44 H 0.97004 * 119.99857 * 359.97438 * 12 10 9 45 45 H 1.09003 * 109.47260 * 59.99379 * 13 12 10 46 46 H 1.08999 * 109.47225 * 299.99578 * 13 12 10 47 47 H 1.08994 * 110.03346 * 238.57245 * 16 14 13 48 48 H 1.09005 * 110.02974 * 359.94800 * 16 14 13 49 49 H 1.08998 * 110.48796 * 264.93589 * 17 16 14 50 50 H 1.08998 * 110.48646 * 142.28496 * 17 16 14 51 51 H 0.96999 * 119.99984 * 88.33030 * 20 18 17 52 52 H 0.96996 * 119.99743 * 179.97438 * 24 23 21 53 53 H 1.09002 * 110.48043 * 98.42991 * 29 14 13 54 54 H 1.09002 * 110.60152 * 335.84626 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1732 1.1890 6 8 1.0110 -2.5901 0.2404 7 7 1.9852 -3.0087 2.1891 8 6 1.5972 -4.4201 2.1307 9 6 2.1084 -5.1417 3.3794 10 6 1.7098 -6.5937 3.3190 11 8 1.0794 -7.0106 2.3704 12 7 2.0538 -7.4291 4.3191 13 6 1.6669 -8.8408 4.2602 14 6 2.1779 -9.5623 5.5088 15 1 3.2488 -9.3952 5.6243 16 6 1.4274 -9.0572 6.7537 17 6 0.7068 -10.2791 7.3599 18 6 1.5212 -11.4930 6.8474 19 1 2.4200 -11.6394 7.4465 20 7 0.6990 -12.7055 6.8438 21 6 0.6861 -13.5273 7.9390 22 1 1.2854 -13.2840 8.8039 23 6 -0.0934 -14.6760 7.9357 24 7 -0.8197 -14.9754 6.8797 25 14 -0.1104 -15.7974 9.4295 26 1 0.7850 -15.2419 10.4759 27 1 -1.4937 -15.8921 9.9616 28 1 0.3633 -17.1495 9.0389 29 6 1.8871 -11.0736 5.4021 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6053 -0.2617 2.1371 38 1 3.1262 -0.6442 1.2953 39 1 2.4891 -2.6751 2.9480 40 1 2.0313 -4.8797 1.2428 41 1 0.5109 -4.4968 2.0855 42 1 1.6748 -4.6821 4.2675 43 1 3.1947 -5.0650 3.4242 44 1 2.5583 -7.0958 5.0776 45 1 2.1014 -9.3000 3.3722 46 1 0.5806 -8.9182 4.2145 47 1 2.1340 -8.6450 7.4740 48 1 0.6997 -8.2974 6.4682 49 1 -0.3216 -10.3316 7.0026 50 1 0.7318 -10.2353 8.4487 51 1 0.1637 -12.9262 6.0655 52 1 -1.3641 -15.7782 6.8773 53 1 2.7734 -11.6094 5.0622 54 1 1.0501 -11.2565 4.7283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691272751.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:18 Heat of formation + Delta-G solvation = -127.092591 kcal Electronic energy + Delta-G solvation = -28333.254666 eV Core-core repulsion = 24302.499921 eV Total energy + Delta-G solvation = -4030.754745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12362 -40.65849 -39.42541 -36.89202 -36.33421 -35.91305 -34.98516 -32.76575 -32.14254 -30.28501 -29.13913 -28.58171 -27.93893 -26.10937 -24.97000 -24.08296 -22.02355 -21.71552 -21.06009 -20.74739 -20.46543 -19.16810 -18.29792 -17.93117 -17.32455 -17.06059 -16.81636 -16.57177 -16.48881 -16.23782 -15.60713 -15.55191 -15.24961 -14.94591 -14.77426 -14.51019 -14.38722 -14.22594 -13.93028 -13.59165 -13.32568 -13.24351 -13.02439 -12.98793 -12.92280 -12.73025 -12.67484 -12.43609 -12.37697 -12.08350 -12.04189 -11.96156 -11.76763 -11.73274 -11.64318 -11.55903 -11.50909 -11.23691 -11.00594 -10.90588 -10.70046 -10.13511 -10.04145 -8.97957 -7.94229 -5.22336 1.46920 1.47634 1.57645 1.64299 1.69530 1.92993 2.51026 2.57530 3.38605 3.61409 3.69710 3.77778 3.81796 3.81997 3.96721 4.04599 4.07005 4.09866 4.31360 4.40120 4.41152 4.50100 4.54795 4.63834 4.67068 4.72519 4.74612 4.75376 4.80199 4.81612 4.86293 4.87311 4.93869 4.95626 5.06614 5.10274 5.13796 5.15525 5.22349 5.33320 5.38171 5.39288 5.48337 5.51048 5.51376 5.55156 5.58462 5.64725 6.28708 6.56874 6.63362 7.28911 7.33745 7.35234 8.12774 8.33890 9.29907 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.040787 B = 0.001291 C = 0.001281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.331830 B =21687.987849 C =21852.393061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.128 4.128 5 C 0.501 3.499 6 O -0.586 6.586 7 N -0.716 5.716 8 C 0.137 3.863 9 C -0.134 4.134 10 C 0.507 3.493 11 O -0.595 6.595 12 N -0.710 5.710 13 C 0.132 3.868 14 C -0.082 4.082 15 H 0.106 0.894 16 C -0.106 4.106 17 C -0.140 4.140 18 C 0.163 3.837 19 H 0.058 0.942 20 N -0.737 5.737 21 C -0.238 4.238 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.973 5.973 25 Si 0.971 3.029 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.295 1.295 29 C -0.119 4.119 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.422 0.578 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.421 0.579 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.067 0.933 49 H 0.036 0.964 50 H 0.051 0.949 51 H 0.370 0.630 52 H 0.249 0.751 53 H 0.068 0.932 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.715 36.222 -5.253 39.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.167 4.167 5 C 0.290 3.710 6 O -0.466 6.466 7 N -0.370 5.370 8 C 0.012 3.988 9 C -0.174 4.174 10 C 0.294 3.706 11 O -0.476 6.476 12 N -0.362 5.362 13 C 0.007 3.993 14 C -0.101 4.101 15 H 0.125 0.875 16 C -0.144 4.144 17 C -0.181 4.181 18 C 0.054 3.946 19 H 0.076 0.924 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.801 3.199 26 H -0.187 1.187 27 H -0.223 1.223 28 H -0.222 1.222 29 C -0.158 4.158 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.258 0.742 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.202 0.798 52 H 0.058 0.942 53 H 0.087 0.913 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.900 35.550 -6.383 38.353 hybrid contribution -0.645 -1.413 0.659 1.687 sum 12.255 34.137 -5.724 36.719 Atomic orbital electron populations 1.21943 0.95947 1.01517 1.01703 1.20864 0.95695 0.96706 0.97079 1.21813 1.01555 0.94104 1.02479 1.21824 1.04666 0.88934 1.01295 1.21516 0.78203 0.89894 0.81412 1.90705 1.41605 1.79066 1.35258 1.45848 1.58029 1.08711 1.24459 1.20764 0.99268 0.80967 0.97777 1.21749 1.05908 0.89625 1.00111 1.21116 0.78432 0.89453 0.81571 1.90764 1.42159 1.79240 1.35440 1.45849 1.57344 1.09090 1.23936 1.21305 0.99013 0.80877 0.98056 1.21822 1.01579 0.93205 0.93509 0.87540 1.22137 0.99267 0.96520 0.96462 1.22907 0.98925 0.96584 0.99666 1.21502 0.92679 0.85363 0.95037 0.92423 1.42643 1.53349 1.24511 1.17069 1.19724 1.20600 1.01550 0.95078 0.90399 1.25565 1.00430 1.00608 1.00480 1.69835 1.33983 1.27745 1.30865 0.85097 0.77025 0.78539 0.79273 1.18703 1.22332 1.22191 1.22517 1.00937 0.95479 0.96878 0.93091 0.93818 0.91950 0.92799 0.91456 0.92801 0.91389 0.86251 0.86015 0.74018 0.93515 0.93745 0.84649 0.84382 0.74160 0.92565 0.93598 0.89163 0.91383 0.94549 0.93018 0.79844 0.94175 0.91332 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.93 71.98 0.64 -1.62 16 2 C -0.08 -0.95 2.57 -10.79 -0.03 -0.98 16 3 C -0.14 -0.90 9.19 71.98 0.66 -0.23 16 4 C -0.13 -0.89 5.17 29.85 0.15 -0.73 16 5 C 0.50 7.74 7.55 87.66 0.66 8.41 16 6 O -0.59 -15.77 13.96 -3.03 -0.04 -15.82 16 7 N -0.72 -6.99 5.56 -463.06 -2.57 -9.56 16 8 C 0.14 2.19 4.96 86.38 0.43 2.62 16 9 C -0.13 -1.07 5.81 29.85 0.17 -0.90 16 10 C 0.51 9.48 7.83 87.66 0.69 10.17 16 11 O -0.60 -18.53 15.98 -3.03 -0.05 -18.58 16 12 N -0.71 -10.55 5.34 -463.08 -2.47 -13.03 16 13 C 0.13 2.89 4.69 86.38 0.40 3.29 16 14 C -0.08 -1.69 2.96 -10.07 -0.03 -1.72 16 15 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 16 C -0.11 -2.22 6.19 31.32 0.19 -2.03 16 17 C -0.14 -4.58 6.51 31.67 0.21 -4.37 16 18 C 0.16 6.13 3.56 46.28 0.16 6.30 16 19 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 20 N -0.74 -37.31 5.23 -316.85 -1.66 -38.97 16 21 C -0.24 -13.19 9.96 84.04 0.84 -12.35 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 25 Si 0.97 46.30 29.55 68.60 2.03 48.32 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 29 C -0.12 -3.62 5.98 31.67 0.19 -3.43 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.93 5.95 -2.38 -0.01 0.92 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.86 7.95 -2.39 -0.02 0.84 16 34 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.42 0.20 8.47 -92.70 -0.79 -0.59 16 40 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 42 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.42 2.87 8.35 -92.71 -0.77 2.10 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.07 1.34 7.61 -2.38 -0.02 1.32 16 49 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.37 20.47 7.76 -92.71 -0.72 19.75 16 52 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 53 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 54 H 0.05 1.72 7.73 -2.39 -0.02 1.70 16 Total: -1.00 -85.12 431.91 -0.06 -85.18 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -1.39 Total: 24.48 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.81 Total: -1.69 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -6.42 Total: -121.90 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.09 Total: -34.40 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -85.12 -0.06 -85.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691272751.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.909 kcal (2) G-P(sol) polarization free energy of solvation -85.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds