Wall clock time and date at job start Sat Apr 11 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47387 * 2 1 4 4 C 1.52995 * 109.46929 * 239.99683 * 2 1 3 5 5 C 1.50708 * 109.46696 * 120.00147 * 2 1 3 6 6 O 1.21279 * 119.99711 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99391 * 179.97438 * 5 2 1 8 8 C 1.46507 * 119.99428 * 179.97438 * 7 5 2 9 9 C 1.53002 * 109.46812 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47083 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00220 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.47424 * 125.65097 * 5.03053 * 13 11 10 15 15 C 1.54913 * 104.83275 * 155.92003 * 14 13 11 16 16 C 1.55151 * 101.58253 * 37.00913 * 15 14 13 17 17 C 1.47022 * 125.64625 * 185.08414 * 13 11 10 18 18 H 1.08997 * 110.01173 * 300.50482 * 17 13 11 19 19 C 1.53005 * 109.87994 * 61.59758 * 17 13 11 20 20 N 1.46506 * 109.46856 * 183.27180 * 19 17 13 21 21 C 1.36931 * 119.99762 * 175.01807 * 20 19 17 22 22 H 1.07999 * 120.00627 * 359.97438 * 21 20 19 23 23 C 1.38817 * 120.00035 * 180.27459 * 21 20 19 24 24 N 1.31614 * 119.99716 * 359.72211 * 23 21 20 25 25 Si 1.86795 * 120.00171 * 179.72726 * 23 21 20 26 26 H 1.48501 * 109.47261 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47711 * 119.99869 * 25 23 21 28 28 H 1.48502 * 109.46782 * 239.99915 * 25 23 21 29 29 H 1.08998 * 109.47178 * 300.00406 * 1 2 3 30 30 H 1.09003 * 109.47205 * 59.99788 * 1 2 3 31 31 H 1.08997 * 109.47673 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46849 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47121 * 300.00263 * 3 2 1 34 34 H 1.08998 * 109.46868 * 59.99993 * 3 2 1 35 35 H 1.09004 * 109.47832 * 300.00210 * 4 2 1 36 36 H 1.09003 * 109.47196 * 60.00532 * 4 2 1 37 37 H 1.09004 * 109.47283 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00581 * 0.02562 * 7 5 2 39 39 H 1.09004 * 109.46835 * 60.01104 * 8 7 5 40 40 H 1.08998 * 109.47650 * 300.00670 * 8 7 5 41 41 H 1.09004 * 109.46448 * 60.00954 * 9 8 7 42 42 H 1.08998 * 109.47631 * 300.00769 * 9 8 7 43 43 H 1.09004 * 109.46740 * 60.00622 * 10 9 8 44 44 H 1.08998 * 109.47629 * 300.00832 * 10 9 8 45 45 H 1.08999 * 110.36380 * 37.07894 * 14 13 11 46 46 H 1.09002 * 110.36803 * 274.75583 * 14 13 11 47 47 H 1.09003 * 111.00092 * 278.93665 * 15 14 13 48 48 H 1.08993 * 111.03483 * 155.09888 * 15 14 13 49 49 H 1.08998 * 110.72168 * 206.13494 * 16 15 14 50 50 H 1.09001 * 110.72178 * 82.86020 * 16 15 14 51 51 H 1.09000 * 109.47489 * 63.27151 * 19 17 13 52 52 H 1.08992 * 109.47185 * 303.26673 * 19 17 13 53 53 H 0.97000 * 119.99858 * 355.01433 * 20 19 17 54 54 H 0.97004 * 120.00285 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0322 -0.7105 1.2305 6 8 1.2440 -1.1710 2.0290 7 7 3.3573 -0.8341 1.4435 8 6 3.8456 -1.5243 2.6400 9 6 5.3756 -1.5255 2.6393 10 6 5.8855 -2.2457 3.8892 11 6 7.3925 -2.2464 3.8889 12 8 7.9990 -1.7220 2.9789 13 7 8.0663 -2.8297 4.8999 14 6 7.4624 -3.5902 6.0091 15 6 8.5889 -4.5311 6.5045 16 6 9.8399 -3.6260 6.3528 17 6 9.5254 -2.8121 5.0798 18 1 10.0130 -3.2682 4.2183 19 6 10.0113 -1.3713 5.2501 20 7 11.4728 -1.3575 5.3505 21 6 12.1440 -0.1653 5.4059 22 1 11.5961 0.7649 5.3753 23 6 13.5292 -0.1521 5.4952 24 7 14.1971 -1.2856 5.5321 25 14 14.4454 1.4744 5.5632 26 1 13.4714 2.5939 5.5060 27 1 15.2186 1.5546 6.8284 28 1 15.3745 1.5677 4.4085 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4423 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.9877 -0.4654 0.8051 39 1 3.4819 -2.5518 2.6405 40 1 3.4826 -1.0099 3.5298 41 1 5.7396 -0.4980 2.6386 42 1 5.7382 -2.0401 1.7495 43 1 5.5214 -3.2731 3.8904 44 1 5.5229 -1.7307 4.7788 45 1 6.6123 -4.1715 5.6518 46 1 7.1531 -2.9156 6.8074 47 1 8.6668 -5.4147 5.8710 48 1 8.4340 -4.8122 7.5461 49 1 10.7373 -4.2287 6.2133 50 1 9.9464 -2.9676 7.2150 51 1 9.5808 -0.9475 6.1574 52 1 9.7006 -0.7790 4.3896 53 1 11.9650 -2.1930 5.3776 54 1 15.1650 -1.2765 5.5949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698731352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:27 Heat of formation + Delta-G solvation = -109.915619 kcal Electronic energy + Delta-G solvation = -29507.493017 eV Core-core repulsion = 25477.483122 eV Total energy + Delta-G solvation = -4030.009895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32864 -41.10367 -38.79610 -36.88403 -36.48428 -36.43217 -33.90804 -33.28589 -32.45373 -30.39113 -28.46335 -28.23503 -27.73854 -26.74108 -25.01477 -24.08173 -23.29013 -22.68534 -21.65878 -20.35124 -19.97175 -19.10981 -18.14423 -17.67745 -17.60649 -17.11042 -16.91027 -16.46947 -16.22435 -15.89675 -15.39972 -15.21703 -15.06931 -14.99345 -14.88397 -14.69376 -14.36085 -14.08650 -13.76002 -13.62834 -13.37052 -13.34172 -13.18566 -13.07620 -12.98055 -12.92639 -12.84739 -12.77341 -12.63671 -12.48230 -12.18038 -12.04149 -11.93405 -11.91746 -11.88212 -11.85569 -11.76200 -11.58034 -11.04245 -10.85951 -10.69001 -10.10908 -9.65056 -9.07478 -8.00362 -5.30232 1.43396 1.45266 1.55345 1.61647 1.64514 1.90580 2.26012 2.53244 3.32145 3.42682 3.60584 3.66567 3.78112 3.84075 3.91224 3.93260 3.98126 4.00807 4.11350 4.21926 4.30069 4.33824 4.37646 4.51805 4.53213 4.61275 4.68145 4.70801 4.71210 4.78072 4.81537 4.84977 4.93566 4.94222 4.94675 5.00460 5.02283 5.10144 5.14654 5.14885 5.18409 5.24442 5.31818 5.33037 5.35346 5.40808 5.44956 5.47476 6.21374 6.50808 6.60766 7.19810 7.21077 7.27954 7.99295 8.26861 9.22981 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.001945 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.063799 B =14390.385042 C =16062.762425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.585 6.585 7 N -0.722 5.722 8 C 0.125 3.875 9 C -0.107 4.107 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.587 6.587 13 N -0.614 5.614 14 C 0.095 3.905 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.136 3.864 18 H 0.047 0.953 19 C 0.155 3.845 20 N -0.737 5.737 21 C -0.250 4.250 22 H 0.067 0.933 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.977 3.023 26 H -0.270 1.270 27 H -0.286 1.286 28 H -0.291 1.291 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.111 0.889 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.017 0.983 52 H 0.004 0.996 53 H 0.377 0.623 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.423 -4.228 -7.120 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.304 3.696 6 O -0.465 6.465 7 N -0.373 5.373 8 C 0.001 3.999 9 C -0.145 4.145 10 C -0.160 4.160 11 C 0.305 3.695 12 O -0.467 6.467 13 N -0.348 5.348 14 C -0.026 4.026 15 C -0.158 4.158 16 C -0.158 4.158 17 C 0.031 3.969 18 H 0.066 0.934 19 C 0.027 3.973 20 N -0.380 5.380 21 C -0.382 4.382 22 H 0.085 0.915 23 C -0.264 4.264 24 N -0.615 5.615 25 Si 0.805 3.195 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.218 1.218 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.129 0.871 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.035 0.965 52 H 0.022 0.978 53 H 0.209 0.791 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -28.712 -4.069 -7.076 29.850 hybrid contribution 1.663 0.790 -0.220 1.854 sum -27.049 -3.279 -7.296 28.207 Atomic orbital electron populations 1.21660 0.92164 1.02119 1.02456 1.20878 0.97946 0.97171 0.92901 1.21891 1.01799 0.92620 1.03428 1.21887 1.01817 1.00164 0.95780 1.21155 0.82014 0.78754 0.87642 1.90667 1.56411 1.50619 1.48755 1.46023 1.07142 1.58399 1.25781 1.21293 0.93003 0.97715 0.87846 1.21399 0.93258 1.01673 0.98203 1.21554 0.88087 1.05260 1.01064 1.21220 0.91579 0.76728 0.79969 1.90727 1.71762 1.47149 1.37110 1.48718 1.06421 1.53813 1.25856 1.22682 0.97331 0.94099 0.88512 1.22816 0.92043 0.97135 1.03824 1.22585 0.99837 0.98079 0.95337 1.21501 0.81592 0.95095 0.98663 0.93449 1.20917 0.84277 0.95480 0.96628 1.42339 1.01227 1.05474 1.88983 1.19584 0.90064 0.86822 1.41726 0.91482 1.25584 0.97060 1.00540 1.03213 1.69811 1.06688 1.26200 1.58822 0.85035 0.78314 0.79134 0.77016 1.19490 1.21248 1.21797 0.93364 0.89755 0.93229 0.91305 0.89449 0.92960 0.92785 0.89486 0.91255 0.75206 0.91051 0.91508 0.91739 0.91090 0.85629 0.86426 0.86986 0.89867 0.89845 0.87099 0.90748 0.91114 0.96548 0.97755 0.79073 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 7.76 71.98 0.56 -1.14 16 2 C -0.09 -1.09 0.87 -52.93 -0.05 -1.13 16 3 C -0.14 -1.34 8.37 71.98 0.60 -0.74 16 4 C -0.14 -1.25 8.37 71.98 0.60 -0.65 16 5 C 0.52 9.77 6.48 87.66 0.57 10.34 16 6 O -0.58 -15.86 15.98 -3.03 -0.05 -15.90 16 7 N -0.72 -11.03 5.34 -463.04 -2.47 -13.51 16 8 C 0.13 1.92 5.67 86.38 0.49 2.41 16 9 C -0.11 -1.81 4.62 30.59 0.14 -1.67 16 10 C -0.12 -1.94 4.79 29.85 0.14 -1.79 16 11 C 0.51 14.59 7.58 87.66 0.66 15.26 16 12 O -0.59 -23.09 15.17 -3.03 -0.05 -23.14 16 13 N -0.61 -16.64 3.07 -788.03 -2.42 -19.06 16 14 C 0.09 1.54 6.65 86.86 0.58 2.12 16 15 C -0.12 -2.06 7.08 31.99 0.23 -1.83 16 16 C -0.12 -3.40 6.00 31.78 0.19 -3.21 16 17 C 0.14 4.81 2.95 45.34 0.13 4.94 16 18 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.15 7.02 5.64 86.38 0.49 7.51 16 20 N -0.74 -40.08 5.44 -343.44 -1.87 -41.95 16 21 C -0.25 -14.87 9.99 84.04 0.84 -14.03 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 24 N -0.96 -60.07 13.06 21.65 0.28 -59.79 16 25 Si 0.98 47.60 29.55 68.60 2.03 49.62 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 28 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 29 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.07 0.56 7.56 -2.39 -0.02 0.55 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.52 7.56 -2.39 -0.02 0.50 16 38 H 0.41 4.72 7.31 -92.71 -0.68 4.05 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 42 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 43 H 0.13 1.28 7.77 -2.38 -0.02 1.26 16 44 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 1.03 7.51 -2.39 -0.02 1.01 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.07 2.17 7.80 -2.39 -0.02 2.15 16 51 H 0.02 0.74 8.06 -2.39 -0.02 0.72 16 52 H 0.00 0.23 6.93 -2.39 -0.02 0.21 16 53 H 0.38 21.15 7.39 -92.71 -0.69 20.47 16 54 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -83.29 429.52 1.61 -81.67 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.49 Total: 29.46 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.65 Total: 12.59 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -6.47 Total: -134.30 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.09 Total: -39.04 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -83.29 1.61 -81.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698731352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.242 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds