Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52999 * 109.47228 * 175.00127 * 3 2 1 5 5 C 1.52997 * 109.47304 * 185.00176 * 4 3 2 6 6 N 1.46505 * 109.46941 * 294.99653 * 3 2 1 7 7 C 1.46760 * 124.34548 * 120.00367 * 6 3 2 8 8 C 1.54479 * 105.47288 * 162.96238 * 7 6 3 9 9 H 1.08995 * 110.96903 * 267.29602 * 8 7 6 10 10 C 1.50705 * 110.96882 * 143.53351 * 8 7 6 11 11 O 1.21279 * 119.99999 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99737 * 180.02562 * 10 8 7 13 13 C 1.46499 * 120.00247 * 359.97438 * 12 10 8 14 14 C 1.46501 * 120.00039 * 179.97438 * 12 10 8 15 15 C 1.53000 * 109.47252 * 89.99784 * 14 12 10 16 16 N 1.46501 * 109.47252 * 179.97438 * 15 14 12 17 17 C 1.46499 * 119.99714 * 90.00313 * 16 15 14 18 18 C 1.36928 * 120.00034 * 270.00208 * 16 15 14 19 19 H 1.08005 * 120.00347 * 23.04475 * 18 16 15 20 20 C 1.38809 * 119.99908 * 203.04707 * 18 16 15 21 21 N 1.31625 * 120.00162 * 12.92613 * 20 18 16 22 22 Si 1.86807 * 120.00150 * 192.92652 * 20 18 16 23 23 H 1.48503 * 109.47056 * 59.99699 * 22 20 18 24 24 H 1.48495 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46855 * 299.99883 * 22 20 18 26 26 C 1.54625 * 101.76553 * 25.41619 * 8 7 6 27 27 C 1.34418 * 124.35180 * 299.98055 * 6 3 2 28 28 O 1.21277 * 124.94191 * 0.46126 * 27 6 3 29 29 H 1.09005 * 109.47262 * 300.00413 * 1 2 3 30 30 H 1.09003 * 109.47181 * 59.99892 * 1 2 3 31 31 H 1.08994 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47112 * 239.99958 * 2 1 3 33 33 H 1.08998 * 109.46986 * 119.99654 * 2 1 3 34 34 H 1.08998 * 109.47421 * 54.99623 * 3 2 1 35 35 H 1.09006 * 109.46871 * 304.99426 * 4 3 2 36 36 H 1.08999 * 109.47111 * 64.99683 * 4 3 2 37 37 H 1.08999 * 109.47439 * 59.99708 * 5 4 3 38 38 H 1.09001 * 109.47361 * 179.97438 * 5 4 3 39 39 H 1.09006 * 109.46544 * 299.99450 * 5 4 3 40 40 H 1.08997 * 110.25467 * 43.96111 * 7 6 3 41 41 H 1.09005 * 110.24893 * 281.96003 * 7 6 3 42 42 H 1.09000 * 109.47514 * 90.00072 * 13 12 10 43 43 H 1.09001 * 109.47576 * 210.00015 * 13 12 10 44 44 H 1.08997 * 109.47196 * 330.00373 * 13 12 10 45 45 H 1.09004 * 109.47027 * 209.99969 * 14 12 10 46 46 H 1.09003 * 109.47046 * 330.00029 * 14 12 10 47 47 H 1.09002 * 109.46799 * 300.00290 * 15 14 12 48 48 H 1.09003 * 109.46895 * 60.00153 * 15 14 12 49 49 H 1.08992 * 109.47404 * 95.11994 * 17 16 15 50 50 H 1.08995 * 109.46945 * 215.12330 * 17 16 15 51 51 H 1.09010 * 109.47158 * 335.12016 * 17 16 15 52 52 H 0.96998 * 119.99837 * 180.02562 * 21 20 18 53 53 H 1.09001 * 110.49166 * 93.87912 * 26 8 7 54 54 H 1.09000 * 110.48551 * 216.52607 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6525 2.0975 -1.2519 7 6 0.8077 3.2948 -1.3330 8 6 1.0296 3.8603 -2.7533 9 1 1.8249 4.6056 -2.7565 10 6 -0.2473 4.4349 -3.3106 11 8 -1.2639 4.4073 -2.6497 12 7 -0.2598 4.9784 -4.5438 13 6 0.9680 5.0112 -5.3424 14 6 -1.5012 5.5365 -5.0859 15 6 -1.6014 7.0165 -4.7112 16 7 -2.8424 7.5747 -5.2538 17 6 -4.0706 7.5421 -4.4557 18 6 -2.8545 8.1270 -6.5067 19 1 -2.1060 7.8402 -7.2305 20 6 -3.8288 9.0554 -6.8465 21 7 -4.5785 9.5958 -5.9093 22 14 -4.0760 9.5382 -8.6341 23 1 -4.4352 8.3348 -9.4267 24 1 -5.1688 10.5390 -8.7301 25 1 -2.8200 10.1249 -9.1666 26 6 1.4539 2.5948 -3.5338 27 6 2.0253 1.6792 -2.4737 28 8 2.7185 0.7088 -2.6942 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6054 1.9816 0.8417 35 1 3.8571 0.8801 1.0114 36 1 4.0029 0.9836 -0.7596 37 1 3.6264 3.3458 1.1365 38 1 5.1508 2.8864 0.3411 39 1 3.7723 3.4493 -0.6346 40 1 1.1149 4.0248 -0.5841 41 1 -0.2398 3.0276 -1.1928 42 1 1.0360 4.1034 -5.9418 43 1 0.9507 5.8803 -6.0001 44 1 1.8309 5.0743 -4.6795 45 1 -1.5014 5.4356 -6.1712 46 1 -2.3532 4.9982 -4.6707 47 1 -1.6011 7.1173 -3.6259 48 1 -0.7493 7.5548 -5.1264 49 1 -4.1850 8.4877 -3.9261 50 1 -4.9266 7.3876 -5.1125 51 1 -4.0139 6.7264 -3.7348 52 1 -5.2595 10.2443 -6.1468 53 1 0.5894 2.1330 -4.0110 54 1 2.2139 2.8409 -4.2754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698989290.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -68.949015 kcal Electronic energy + Delta-G solvation = -31015.471692 eV Core-core repulsion = 26987.238242 eV Total energy + Delta-G solvation = -4028.233450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09247 -40.58835 -37.90518 -37.63213 -36.59482 -36.39488 -33.51602 -33.02041 -32.12837 -30.08698 -28.73812 -27.97631 -27.56370 -27.29497 -25.59130 -23.54216 -23.02551 -22.90474 -22.19164 -19.98464 -19.89877 -18.75844 -18.49058 -17.77783 -17.38888 -16.87206 -16.77989 -16.36263 -15.93204 -15.53114 -15.49504 -15.37221 -15.19545 -14.73823 -14.66111 -14.48020 -14.19130 -13.98464 -13.94495 -13.87401 -13.85075 -13.64896 -13.40896 -13.07009 -13.00048 -12.74291 -12.71708 -12.54520 -12.52379 -12.44881 -12.41383 -12.14743 -12.06832 -11.91958 -11.88117 -11.78440 -11.73734 -11.59515 -10.98244 -10.66938 -10.53307 -9.75061 -9.63644 -8.74540 -7.81242 -5.32735 1.48372 1.51652 1.53979 1.57937 1.60095 1.85482 2.12804 2.53667 3.14696 3.31970 3.34002 3.61461 3.72996 3.79666 3.90418 4.01841 4.04542 4.13744 4.24040 4.33450 4.41016 4.44254 4.47070 4.53007 4.55362 4.57996 4.62595 4.69554 4.73589 4.78278 4.82971 4.88459 4.89711 4.95845 4.98578 5.02944 5.04308 5.10336 5.14914 5.16905 5.21618 5.31253 5.32805 5.39784 5.57183 5.63158 5.67301 5.70952 6.14885 6.32417 6.46112 7.13046 7.15761 7.19105 7.84481 8.31432 9.22153 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023660 B = 0.002188 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.129836 B =12793.491239 C =13116.958931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.155 3.845 4 C -0.136 4.136 5 C -0.146 4.146 6 N -0.602 5.602 7 C 0.118 3.882 8 C -0.107 4.107 9 H 0.148 0.852 10 C 0.518 3.482 11 O -0.578 6.578 12 N -0.605 5.605 13 C 0.066 3.934 14 C 0.112 3.888 15 C 0.149 3.851 16 N -0.618 5.618 17 C 0.179 3.821 18 C -0.263 4.263 19 H 0.079 0.921 20 C -0.057 4.057 21 N -0.942 5.942 22 Si 0.973 3.027 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.271 1.271 26 C -0.138 4.138 27 C 0.517 3.483 28 O -0.564 6.564 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.029 0.971 48 H 0.052 0.948 49 H 0.005 0.995 50 H 0.017 0.983 51 H 0.020 0.980 52 H 0.248 0.752 53 H 0.100 0.900 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.858 -16.141 11.179 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 C -0.174 4.174 5 C -0.203 4.203 6 N -0.335 5.335 7 C -0.006 4.006 8 C -0.129 4.129 9 H 0.165 0.835 10 C 0.306 3.694 11 O -0.457 6.457 12 N -0.337 5.337 13 C -0.075 4.075 14 C -0.014 4.014 15 C 0.021 3.979 16 N -0.341 5.341 17 C 0.034 3.966 18 C -0.393 4.393 19 H 0.097 0.903 20 C -0.252 4.252 21 N -0.589 5.589 22 Si 0.801 3.199 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.196 1.196 26 C -0.178 4.178 27 C 0.306 3.694 28 O -0.444 6.444 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.023 0.977 50 H 0.036 0.964 51 H 0.039 0.961 52 H 0.057 0.943 53 H 0.118 0.882 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.580 -16.556 11.468 27.402 hybrid contribution -0.891 0.552 -0.966 1.425 sum 17.688 -16.005 10.502 26.064 Atomic orbital electron populations 1.21701 0.95495 1.01676 1.01491 1.21910 0.96269 0.96379 1.02985 1.21273 0.95199 0.93153 0.85090 1.21888 0.94209 0.98581 1.02711 1.21706 1.01090 0.95600 1.01907 1.48422 1.49800 1.28985 1.06270 1.22022 0.95547 0.86679 0.96304 1.22168 0.96386 0.98692 0.95615 0.83471 1.20638 0.90180 0.77463 0.81095 1.90717 1.36477 1.59142 1.59408 1.47937 1.11699 1.57905 1.16161 1.22205 0.85147 1.03612 0.96576 1.21954 0.85763 0.95075 0.98593 1.21044 0.88439 0.92541 0.95830 1.44079 1.05238 1.68524 1.16306 1.20498 0.87873 0.95610 0.92650 1.19528 1.13433 1.17147 0.89174 0.90280 1.25895 1.00254 0.97442 1.01604 1.70253 1.24945 1.31016 1.32645 0.85259 0.77355 0.77380 0.79935 1.20349 1.22467 1.19645 1.22387 1.03770 0.93610 0.98022 1.20974 0.78978 0.84525 0.84951 1.90681 1.40023 1.29377 1.84313 0.91639 0.94592 0.92561 0.92875 0.89190 0.87526 0.89538 0.92792 0.91665 0.92472 0.93308 0.87833 0.90886 0.90620 0.90588 0.88208 0.90318 0.92981 0.95292 0.92913 0.97715 0.96396 0.96148 0.94304 0.88201 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.80 71.98 0.71 -1.68 16 2 C -0.14 -2.17 5.36 30.60 0.16 -2.01 16 3 C 0.15 2.20 2.26 44.99 0.10 2.31 16 4 C -0.14 -1.85 5.36 30.59 0.16 -1.69 16 5 C -0.15 -1.68 9.80 71.98 0.71 -0.97 16 6 N -0.60 -9.92 1.74 -794.04 -1.38 -11.30 16 7 C 0.12 1.87 6.66 86.83 0.58 2.45 16 8 C -0.11 -1.63 2.55 -10.48 -0.03 -1.65 16 9 H 0.15 1.37 7.25 -2.39 -0.02 1.35 16 10 C 0.52 12.78 6.96 87.66 0.61 13.39 16 11 O -0.58 -19.71 15.08 -3.03 -0.05 -19.76 16 12 N -0.61 -14.66 2.87 -846.74 -2.43 -17.10 16 13 C 0.07 0.96 9.19 127.77 1.17 2.14 16 14 C 0.11 3.74 5.73 86.38 0.50 4.24 16 15 C 0.15 6.00 5.97 86.38 0.52 6.51 16 16 N -0.62 -31.33 2.92 -726.94 -2.12 -33.45 16 17 C 0.18 9.34 8.98 127.77 1.15 10.48 16 18 C -0.26 -14.12 9.65 84.03 0.81 -13.30 16 19 H 0.08 3.96 7.86 -2.91 -0.02 3.94 16 20 C -0.06 -3.18 5.10 84.86 0.43 -2.75 16 21 N -0.94 -56.32 10.71 21.65 0.23 -56.09 16 22 Si 0.97 44.30 29.57 68.60 2.03 46.33 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C -0.14 -2.07 5.47 30.59 0.17 -1.90 16 27 C 0.52 10.38 7.37 87.90 0.65 11.03 16 28 O -0.56 -15.24 15.02 -3.02 -0.05 -15.29 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.03 0.72 7.75 -2.39 -0.02 0.70 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.14 6.62 -2.39 -0.02 1.13 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.16 8.07 -2.39 -0.02 1.15 16 35 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.05 1.04 6.65 -2.39 -0.02 1.03 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.62 7.75 -2.38 -0.02 0.60 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.53 6.96 -2.38 -0.02 1.51 16 42 H 0.08 0.86 8.13 -2.39 -0.02 0.84 16 43 H 0.08 1.19 8.07 -2.39 -0.02 1.18 16 44 H 0.10 0.84 6.12 -2.39 -0.01 0.83 16 45 H 0.08 2.59 8.07 -2.38 -0.02 2.57 16 46 H 0.05 2.02 7.42 -2.39 -0.02 2.00 16 47 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 48 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 49 H 0.00 0.26 7.34 -2.39 -0.02 0.24 16 50 H 0.02 0.97 7.34 -2.39 -0.02 0.95 16 51 H 0.02 0.95 8.03 -2.38 -0.02 0.93 16 52 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 53 H 0.10 1.71 7.89 -2.39 -0.02 1.69 16 54 H 0.13 1.35 7.56 -2.39 -0.02 1.33 16 Total: -1.00 -74.23 421.74 5.48 -68.75 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.85 Total: 11.32 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 8.39 Total: 26.60 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.70 Total: -117.94 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.09 Total: -35.05 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.23 5.48 -68.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698989290.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.199 kcal (2) G-P(sol) polarization free energy of solvation -74.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds