Wall clock time and date at job start Sat Apr 11 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.53002 * 109.47096 * 175.00345 * 3 2 1 5 5 C 1.52996 * 109.46977 * 185.00618 * 4 3 2 6 6 N 1.46503 * 109.47520 * 295.00457 * 3 2 1 7 7 C 1.46764 * 124.34777 * 120.04459 * 6 3 2 8 8 C 1.54478 * 105.47038 * 196.99466 * 7 6 3 9 9 H 1.09007 * 111.00011 * 92.71921 * 8 7 6 10 10 C 1.50699 * 110.97129 * 216.46430 * 8 7 6 11 11 O 1.21279 * 119.99652 * 353.84097 * 10 8 7 12 12 N 1.34777 * 120.00076 * 173.83462 * 10 8 7 13 13 C 1.46493 * 119.99868 * 0.02562 * 12 10 8 14 14 C 1.46500 * 119.99708 * 180.02562 * 12 10 8 15 15 C 1.52999 * 109.47467 * 270.00116 * 14 12 10 16 16 N 1.46497 * 109.47338 * 180.02562 * 15 14 12 17 17 C 1.46503 * 119.99346 * 269.99531 * 16 15 14 18 18 C 1.36928 * 120.00433 * 89.99917 * 16 15 14 19 19 H 1.08005 * 119.99970 * 20.35705 * 18 16 15 20 20 C 1.38810 * 120.00213 * 200.36250 * 18 16 15 21 21 N 1.31624 * 120.00015 * 14.98448 * 20 18 16 22 22 Si 1.86799 * 120.00262 * 194.98488 * 20 18 16 23 23 H 1.48505 * 109.47021 * 85.00202 * 22 20 18 24 24 H 1.48504 * 109.47295 * 205.00119 * 22 20 18 25 25 H 1.48505 * 109.47165 * 325.00310 * 22 20 18 26 26 C 1.54625 * 101.76923 * 334.58888 * 8 7 6 27 27 C 1.34416 * 124.34598 * 300.02483 * 6 3 2 28 28 O 1.21275 * 124.94947 * 359.64880 * 27 6 3 29 29 H 1.09005 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47061 * 299.99600 * 1 2 3 31 31 H 1.09001 * 109.47630 * 59.99402 * 1 2 3 32 32 H 1.09001 * 109.46909 * 240.00929 * 2 1 3 33 33 H 1.08989 * 109.47328 * 120.00735 * 2 1 3 34 34 H 1.09001 * 109.46955 * 55.00631 * 3 2 1 35 35 H 1.08997 * 109.46822 * 305.00497 * 4 3 2 36 36 H 1.08997 * 109.46867 * 65.00330 * 4 3 2 37 37 H 1.08997 * 109.47557 * 60.00135 * 5 4 3 38 38 H 1.09006 * 109.47289 * 180.02562 * 5 4 3 39 39 H 1.09001 * 109.46759 * 299.99720 * 5 4 3 40 40 H 1.08998 * 110.24533 * 78.00111 * 7 6 3 41 41 H 1.08997 * 110.24752 * 315.99452 * 7 6 3 42 42 H 1.08999 * 109.47242 * 269.99927 * 13 12 10 43 43 H 1.08992 * 109.47454 * 30.00362 * 13 12 10 44 44 H 1.09002 * 109.46887 * 150.00423 * 13 12 10 45 45 H 1.09007 * 109.46772 * 150.00045 * 14 12 10 46 46 H 1.08997 * 109.47547 * 30.00438 * 14 12 10 47 47 H 1.09007 * 109.46592 * 300.00337 * 15 14 12 48 48 H 1.08995 * 109.47184 * 59.99746 * 15 14 12 49 49 H 1.09004 * 109.46951 * 95.10016 * 17 16 15 50 50 H 1.09002 * 109.46962 * 215.09537 * 17 16 15 51 51 H 1.08993 * 109.47397 * 335.09846 * 17 16 15 52 52 H 0.96993 * 119.99857 * 179.97438 * 21 20 18 53 53 H 1.08993 * 110.48942 * 143.47137 * 26 8 7 54 54 H 1.09000 * 110.48753 * 265.98680 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1256 5 6 4.0644 2.8850 0.2512 6 7 1.6523 2.0976 -1.2518 7 6 0.8083 3.2955 -1.3326 8 6 0.3200 3.3575 -2.7969 9 1 -0.6417 2.8569 -2.9095 10 6 0.2427 4.7830 -3.2797 11 8 0.4378 5.6965 -2.5064 12 7 -0.0433 5.0425 -4.5710 13 6 -0.2794 3.9389 -5.5050 14 6 -0.1179 6.4282 -5.0405 15 6 -1.5505 6.9426 -4.8860 16 7 -1.6252 8.3281 -5.3560 17 6 -1.3890 9.4320 -4.4223 18 6 -1.9159 8.5914 -6.6680 19 1 -2.4037 7.8421 -7.2739 20 6 -1.5836 9.8212 -7.2192 21 7 -0.7410 10.6164 -6.5945 22 14 -2.3322 10.3478 -8.8476 23 1 -3.6561 10.9749 -8.6041 24 1 -1.4349 11.3277 -9.5111 25 1 -2.5006 9.1596 -9.7223 26 6 1.4366 2.5831 -3.5347 27 6 2.0244 1.6790 -2.4737 28 8 2.7282 0.7162 -2.6937 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8898 34 1 1.6054 1.9815 0.8419 35 1 3.8570 0.8800 1.0111 36 1 4.0028 0.9837 -0.7598 37 1 3.6264 3.3456 1.1366 38 1 5.1508 2.8864 0.3402 39 1 3.7721 3.4493 -0.6344 40 1 1.3910 4.1845 -1.0914 41 1 -0.0409 3.2050 -0.6553 42 1 0.6642 3.6424 -5.9631 43 1 -0.7039 3.0916 -4.9665 44 1 -0.9742 4.2616 -6.2804 45 1 0.1729 6.4723 -6.0901 46 1 0.5565 7.0486 -4.4503 47 1 -2.2249 6.3221 -5.4763 48 1 -1.8413 6.8984 -3.8365 49 1 -0.3461 9.7431 -4.4838 50 1 -2.0344 10.2714 -4.6813 51 1 -1.6107 9.1030 -3.4071 52 1 -0.5086 11.4756 -6.9799 53 1 1.0172 1.9927 -4.3493 54 1 2.1921 3.2715 -3.9134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698989291.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:33 Heat of formation + Delta-G solvation = -68.107625 kcal Electronic energy + Delta-G solvation = -31094.430860 eV Core-core repulsion = 27066.233895 eV Total energy + Delta-G solvation = -4028.196965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10003 -40.58348 -37.90687 -37.63351 -36.61780 -36.39451 -33.50614 -33.02050 -32.14397 -30.06602 -28.75942 -27.98362 -27.55152 -27.30667 -25.57552 -23.53672 -23.02990 -22.90380 -22.19595 -20.00328 -19.90662 -18.79207 -18.45137 -17.77395 -17.29037 -16.91777 -16.84341 -16.36009 -15.88954 -15.55164 -15.50254 -15.37590 -15.19487 -14.73566 -14.63756 -14.49516 -14.21990 -14.01020 -13.91386 -13.87710 -13.82018 -13.62255 -13.40876 -13.19479 -12.87976 -12.81262 -12.73080 -12.54846 -12.51132 -12.44007 -12.41392 -12.07005 -12.04550 -11.94242 -11.88231 -11.78246 -11.74186 -11.58206 -10.97404 -10.66545 -10.52919 -9.75171 -9.63769 -8.79949 -7.82592 -5.29938 1.48575 1.50484 1.55026 1.58554 1.60510 1.84920 2.13218 2.53338 3.14242 3.31094 3.33202 3.61879 3.73103 3.79236 3.90349 4.01945 4.05011 4.13751 4.25025 4.33495 4.40021 4.44289 4.49207 4.53041 4.55372 4.57796 4.62681 4.69171 4.72797 4.78599 4.82038 4.88348 4.89810 4.96584 4.98774 5.01985 5.03493 5.10599 5.16738 5.17853 5.22167 5.29622 5.32356 5.40304 5.53412 5.65152 5.68368 5.71112 6.14652 6.30993 6.47449 7.12337 7.15707 7.19494 7.84421 8.30084 9.21730 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.002228 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.936043 B =12563.480774 C =12854.423890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.155 3.845 4 C -0.137 4.137 5 C -0.146 4.146 6 N -0.602 5.602 7 C 0.119 3.881 8 C -0.106 4.106 9 H 0.151 0.849 10 C 0.517 3.483 11 O -0.579 6.579 12 N -0.605 5.605 13 C 0.066 3.934 14 C 0.112 3.888 15 C 0.149 3.851 16 N -0.616 5.616 17 C 0.179 3.821 18 C -0.261 4.261 19 H 0.080 0.920 20 C -0.056 4.056 21 N -0.940 5.940 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.264 1.264 26 C -0.141 4.141 27 C 0.517 3.483 28 O -0.564 6.564 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.059 0.941 48 H 0.039 0.961 49 H 0.002 0.998 50 H 0.020 0.980 51 H 0.022 0.978 52 H 0.248 0.752 53 H 0.135 0.865 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -23.555 12.709 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 C -0.176 4.176 5 C -0.204 4.204 6 N -0.335 5.335 7 C -0.004 4.004 8 C -0.127 4.127 9 H 0.168 0.832 10 C 0.305 3.695 11 O -0.459 6.459 12 N -0.337 5.337 13 C -0.075 4.075 14 C -0.014 4.014 15 C 0.022 3.978 16 N -0.340 5.340 17 C 0.034 3.966 18 C -0.391 4.391 19 H 0.097 0.903 20 C -0.251 4.251 21 N -0.587 5.587 22 Si 0.799 3.201 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.188 1.188 26 C -0.181 4.181 27 C 0.306 3.694 28 O -0.444 6.444 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.020 0.980 50 H 0.039 0.961 51 H 0.040 0.960 52 H 0.057 0.943 53 H 0.153 0.847 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.881 -23.454 13.020 26.980 hybrid contribution 0.122 1.137 -1.029 1.538 sum 3.003 -22.318 11.991 25.512 Atomic orbital electron populations 1.21705 0.94594 1.01946 1.02038 1.21886 0.97111 0.95490 1.02900 1.21277 0.94644 0.93690 0.85097 1.21910 0.95110 0.97736 1.02799 1.21702 1.01080 0.96224 1.01380 1.48430 1.50410 1.28420 1.06245 1.21998 0.95376 0.87260 0.95723 1.22164 1.02592 0.92044 0.95902 0.83180 1.20683 0.75834 0.91237 0.81714 1.90720 1.51493 1.48416 1.55244 1.47994 1.68717 1.07555 1.09452 1.22226 1.02666 0.88958 0.93685 1.22002 0.99573 0.81050 0.98758 1.21145 0.94499 0.84900 0.97244 1.44195 1.82028 1.00933 1.06820 1.20515 0.97769 0.89533 0.88811 1.19577 1.31279 1.00316 0.87922 0.90251 1.25806 0.98682 0.98945 1.01679 1.70272 1.35684 1.11420 1.41343 0.85225 0.77275 0.77978 0.79601 1.21407 1.22539 1.18832 1.22463 0.98397 0.98680 0.98563 1.20972 0.79422 0.84028 0.85008 1.90679 1.39617 1.29672 1.84400 0.92468 0.91614 0.93297 0.92825 0.89525 0.87461 0.89143 0.92919 0.91575 0.92594 0.94688 0.91146 0.87641 0.91043 0.87901 0.90543 0.91336 0.93913 0.92290 0.94236 0.97992 0.96133 0.95998 0.94331 0.84679 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.80 71.98 0.71 -0.96 16 2 C -0.14 -1.87 5.36 30.59 0.16 -1.70 16 3 C 0.15 2.24 2.25 44.99 0.10 2.34 16 4 C -0.14 -2.22 5.36 30.59 0.16 -2.06 16 5 C -0.15 -2.47 9.80 71.98 0.71 -1.76 16 6 N -0.60 -10.14 1.74 -794.03 -1.38 -11.52 16 7 C 0.12 1.94 6.62 86.83 0.57 2.52 16 8 C -0.11 -1.66 2.57 -10.48 -0.03 -1.69 16 9 H 0.15 1.42 7.56 -2.38 -0.02 1.40 16 10 C 0.52 13.33 6.99 87.66 0.61 13.94 16 11 O -0.58 -20.49 15.15 -3.03 -0.05 -20.54 16 12 N -0.61 -15.65 2.87 -846.79 -2.43 -18.08 16 13 C 0.07 1.05 8.98 127.77 1.15 2.20 16 14 C 0.11 4.08 5.73 86.38 0.49 4.58 16 15 C 0.15 5.97 6.03 86.38 0.52 6.49 16 16 N -0.62 -31.11 2.93 -726.94 -2.13 -33.23 16 17 C 0.18 9.30 9.02 127.77 1.15 10.45 16 18 C -0.26 -13.96 9.68 84.03 0.81 -13.15 16 19 H 0.08 4.00 7.86 -2.91 -0.02 3.98 16 20 C -0.06 -3.12 5.06 84.86 0.43 -2.69 16 21 N -0.94 -55.98 10.67 21.65 0.23 -55.74 16 22 Si 0.97 44.30 29.58 68.60 2.03 46.33 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 C -0.14 -2.22 5.04 30.59 0.15 -2.06 16 27 C 0.52 10.65 7.37 87.90 0.65 11.30 16 28 O -0.56 -15.52 15.02 -3.01 -0.05 -15.56 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 32 H 0.05 1.05 6.65 -2.39 -0.02 1.03 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.16 6.63 -2.39 -0.02 1.14 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.03 0.72 7.75 -2.39 -0.02 0.70 16 40 H 0.07 1.51 7.06 -2.39 -0.02 1.49 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 0.97 7.90 -2.39 -0.02 0.95 16 43 H 0.10 0.93 5.96 -2.39 -0.01 0.91 16 44 H 0.08 1.28 8.07 -2.39 -0.02 1.26 16 45 H 0.07 2.61 8.07 -2.38 -0.02 2.59 16 46 H 0.04 1.86 7.42 -2.39 -0.02 1.84 16 47 H 0.06 2.16 8.03 -2.38 -0.02 2.14 16 48 H 0.04 1.58 7.86 -2.39 -0.02 1.56 16 49 H 0.00 0.10 7.40 -2.38 -0.02 0.08 16 50 H 0.02 1.12 7.21 -2.39 -0.02 1.10 16 51 H 0.02 1.00 7.84 -2.39 -0.02 0.99 16 52 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 53 H 0.14 1.44 7.10 -2.39 -0.02 1.42 16 54 H 0.10 1.80 7.89 -2.39 -0.02 1.78 16 Total: -1.00 -74.00 420.32 5.44 -68.55 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.85 Total: 12.04 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 8.36 Total: 27.75 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -5.71 Total: -118.58 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.09 Total: -36.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.00 5.44 -68.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698989291.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.446 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds