Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46961 * 2 1 4 4 C 1.53005 * 109.47031 * 175.00127 * 3 2 1 5 5 C 1.53002 * 109.46663 * 185.00148 * 4 3 2 6 6 N 1.46493 * 109.47076 * 294.99969 * 3 2 1 7 7 C 1.46764 * 124.34976 * 120.00001 * 6 3 2 8 8 C 1.54480 * 105.47878 * 162.98472 * 7 6 3 9 9 H 1.08998 * 110.99930 * 267.28593 * 8 7 6 10 10 C 1.50697 * 110.97349 * 143.53251 * 8 7 6 11 11 O 1.21277 * 119.99941 * 339.25880 * 10 8 7 12 12 N 1.34776 * 119.99794 * 159.25314 * 10 8 7 13 13 C 1.46501 * 120.00205 * 5.11353 * 12 10 8 14 14 C 1.53004 * 109.46954 * 92.81382 * 13 12 10 15 15 C 1.46500 * 119.99979 * 185.11499 * 12 10 8 16 16 C 1.52998 * 109.47383 * 90.00000 * 15 12 10 17 17 N 1.46500 * 109.47383 * 179.97438 * 16 15 12 18 18 C 1.36935 * 120.00103 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99697 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00237 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99877 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00307 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47342 * 59.99620 * 22 20 18 24 24 H 1.48501 * 109.47635 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47196 * 299.99811 * 22 20 18 26 26 C 1.54631 * 101.76056 * 25.41138 * 8 7 6 27 27 C 1.34746 * 124.30226 * 299.96322 * 6 3 2 28 28 O 1.21276 * 125.12207 * 0.40225 * 27 6 3 29 29 H 1.08996 * 109.46906 * 299.99757 * 1 2 3 30 30 H 1.08994 * 109.46906 * 60.00136 * 1 2 3 31 31 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47157 * 240.00587 * 2 1 3 33 33 H 1.09001 * 109.47718 * 120.00005 * 2 1 3 34 34 H 1.08996 * 109.47065 * 55.00240 * 3 2 1 35 35 H 1.09003 * 109.46876 * 304.99972 * 4 3 2 36 36 H 1.09000 * 109.46958 * 65.00073 * 4 3 2 37 37 H 1.09004 * 109.46628 * 180.02562 * 5 4 3 38 38 H 1.09003 * 109.47331 * 299.99545 * 5 4 3 39 39 H 1.08996 * 109.47290 * 59.99809 * 5 4 3 40 40 H 1.09002 * 110.24904 * 43.98333 * 7 6 3 41 41 H 1.09004 * 110.31994 * 282.02122 * 7 6 3 42 42 H 1.09002 * 109.47263 * 212.81030 * 13 12 10 43 43 H 1.08993 * 109.47257 * 332.81673 * 13 12 10 44 44 H 1.09000 * 109.47420 * 185.69942 * 14 13 12 45 45 H 1.09002 * 109.47395 * 305.70038 * 14 13 12 46 46 H 1.08999 * 109.47223 * 65.69973 * 14 13 12 47 47 H 1.09004 * 109.47329 * 210.00172 * 15 12 10 48 48 H 1.09004 * 109.47087 * 330.00029 * 15 12 10 49 49 H 1.09004 * 109.47028 * 300.00355 * 16 15 12 50 50 H 1.09004 * 109.46985 * 59.99966 * 16 15 12 51 51 H 0.96998 * 120.00069 * 0.02562 * 17 16 15 52 52 H 0.96994 * 119.99845 * 180.02562 * 21 20 18 53 53 H 1.08999 * 110.48161 * 93.88643 * 26 8 7 54 54 H 1.09000 * 110.48668 * 216.39477 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 0.1257 5 6 4.0644 2.8851 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 0.8075 3.2948 -1.3329 8 6 1.0289 3.8602 -2.7533 9 1 1.8240 4.6057 -2.7575 10 6 -0.2481 4.4345 -3.3104 11 8 -1.3175 4.0927 -2.8517 12 7 -0.2018 5.3282 -4.3182 13 6 1.0798 5.6571 -4.9472 14 6 1.2986 4.7530 -6.1619 15 6 -1.4329 5.9707 -4.7846 16 6 -1.6670 7.2594 -3.9937 17 7 -2.8978 7.9022 -4.4606 18 6 -3.3129 9.0783 -3.8953 19 1 -2.7331 9.5318 -3.1050 20 6 -4.4794 9.6872 -4.3373 21 7 -5.1863 9.1342 -5.3001 22 14 -5.0461 11.2912 -3.5657 23 1 -4.0030 12.3300 -3.7609 24 1 -6.3093 11.7316 -4.2103 25 1 -5.2760 11.0875 -2.1129 26 6 1.4531 2.5944 -3.5338 27 6 2.0270 1.6776 -2.4761 28 8 2.7211 0.7085 -2.6993 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 1.6054 1.9815 0.8418 35 1 3.8571 0.8801 1.0113 36 1 4.0029 0.9837 -0.7597 37 1 5.1508 2.8865 0.3402 38 1 3.7722 3.4495 -0.6345 39 1 3.6263 3.3458 1.1365 40 1 1.1150 4.0249 -0.5842 41 1 -0.2402 3.0290 -1.1918 42 1 1.0708 6.6992 -5.2668 43 1 1.8863 5.5039 -4.2303 44 1 2.2944 4.9268 -6.5697 45 1 1.2069 3.7097 -5.8596 46 1 0.5504 4.9781 -6.9219 47 1 -1.3405 6.2068 -5.8448 48 1 -2.2748 5.2946 -4.6350 49 1 -1.7595 7.0233 -2.9336 50 1 -0.8251 7.9354 -4.1433 51 1 -3.4188 7.4947 -5.1702 52 1 -6.0012 9.5599 -5.6092 53 1 0.5885 2.1327 -4.0105 54 1 2.2112 2.8408 -4.2772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699185154.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -86.937440 kcal Electronic energy + Delta-G solvation = -31042.252067 eV Core-core repulsion = 27013.238580 eV Total energy + Delta-G solvation = -4029.013487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13494 -40.69279 -37.78836 -37.54332 -36.66100 -36.28681 -33.63869 -33.02284 -32.06929 -31.47389 -29.46524 -28.63711 -27.40294 -25.88254 -24.47754 -24.00160 -23.05928 -22.90756 -22.61574 -19.99766 -19.81135 -19.18282 -18.70716 -17.83818 -17.34600 -16.90599 -16.71200 -16.29035 -15.98676 -15.55683 -15.44156 -15.26048 -15.23000 -15.05437 -14.90733 -14.67172 -14.48785 -14.20308 -13.96866 -13.86341 -13.80461 -13.60379 -13.41618 -13.06808 -12.89646 -12.77457 -12.76151 -12.57789 -12.53314 -12.41559 -12.26888 -12.15858 -12.12075 -11.91140 -11.86563 -11.85567 -11.78435 -11.70245 -10.96618 -10.93237 -10.58638 -9.72961 -9.64327 -9.05251 -7.96825 -5.27388 1.43770 1.47302 1.50811 1.55869 1.57125 1.81182 2.06087 2.56575 3.11559 3.35562 3.36677 3.54731 3.70857 3.83972 3.91916 4.01486 4.07241 4.12582 4.19886 4.20624 4.25938 4.33214 4.42966 4.46651 4.50684 4.51331 4.55417 4.58765 4.59759 4.66013 4.70562 4.86939 4.88632 4.92795 4.96779 4.99915 5.02755 5.09718 5.10514 5.13791 5.16219 5.21420 5.32231 5.39873 5.42641 5.44689 5.56544 5.69670 6.11817 6.24601 6.40134 7.11084 7.15103 7.30794 8.03561 8.27550 9.26404 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.002345 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.050275 B =11937.156375 C =12541.713893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.154 3.846 4 C -0.135 4.135 5 C -0.146 4.146 6 N -0.602 5.602 7 C 0.115 3.885 8 C -0.109 4.109 9 H 0.147 0.853 10 C 0.521 3.479 11 O -0.576 6.576 12 N -0.598 5.598 13 C 0.093 3.907 14 C -0.172 4.172 15 C 0.122 3.878 16 C 0.150 3.850 17 N -0.744 5.744 18 C -0.249 4.249 19 H 0.075 0.925 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.273 1.273 24 H -0.294 1.294 25 H -0.279 1.279 26 C -0.135 4.135 27 C 0.520 3.480 28 O -0.562 6.562 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.004 0.996 50 H 0.032 0.968 51 H 0.375 0.625 52 H 0.253 0.747 53 H 0.097 0.903 54 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.662 -15.004 8.269 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 C -0.174 4.174 5 C -0.203 4.203 6 N -0.335 5.335 7 C -0.008 4.008 8 C -0.131 4.131 9 H 0.165 0.835 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.330 5.330 13 C -0.029 4.029 14 C -0.230 4.230 15 C -0.001 4.001 16 C 0.022 3.978 17 N -0.387 5.387 18 C -0.380 4.380 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.199 1.199 24 H -0.220 1.220 25 H -0.206 1.206 26 C -0.176 4.176 27 C 0.308 3.692 28 O -0.441 6.441 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.022 0.978 50 H 0.050 0.950 51 H 0.206 0.794 52 H 0.062 0.938 53 H 0.115 0.885 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 22.507 -15.567 8.585 28.681 hybrid contribution -1.245 0.654 -0.216 1.423 sum 21.262 -14.913 8.370 27.286 Atomic orbital electron populations 1.21701 0.95585 1.01662 1.01457 1.21912 0.96181 0.96423 1.03004 1.21282 0.95281 0.93127 0.85051 1.21890 0.94091 0.98648 1.02730 1.21708 1.01113 0.95550 1.01934 1.48461 1.49795 1.28974 1.06236 1.22068 0.95718 0.86863 0.96182 1.22228 0.96359 0.98759 0.95731 0.83515 1.20636 0.90783 0.78383 0.79247 1.90734 1.33009 1.61050 1.60701 1.47964 1.09026 1.41183 1.34827 1.22002 0.83725 1.00827 0.96298 1.22271 1.03278 0.99831 0.97590 1.21300 0.87113 0.93151 0.98585 1.20957 0.88538 0.92714 0.95554 1.42409 1.26151 1.25721 1.44466 1.19554 1.05116 0.98909 1.14471 0.90705 1.25618 0.98164 1.02955 0.99927 1.69811 1.17753 1.42057 1.32288 0.85171 0.77198 0.79449 0.77692 1.19915 1.22009 1.20560 1.22356 1.03575 0.93586 0.98047 1.20986 0.78904 0.84459 0.84842 1.90680 1.39901 1.29369 1.84156 0.91684 0.94663 0.92564 0.92865 0.89129 0.87532 0.89525 0.92758 0.92419 0.93234 0.91686 0.87589 0.90952 0.89577 0.87097 0.88933 0.92225 0.93379 0.89161 0.92206 0.97809 0.95024 0.79356 0.93850 0.88477 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.80 71.98 0.71 -1.81 16 2 C -0.14 -2.23 5.36 30.60 0.16 -2.06 16 3 C 0.15 2.25 2.26 45.00 0.10 2.35 16 4 C -0.14 -1.85 5.36 30.60 0.16 -1.69 16 5 C -0.15 -1.65 9.80 71.98 0.71 -0.95 16 6 N -0.60 -10.16 1.74 -793.56 -1.38 -11.54 16 7 C 0.11 1.88 6.80 86.83 0.59 2.47 16 8 C -0.11 -1.69 2.68 -10.48 -0.03 -1.72 16 9 H 0.15 1.31 6.31 -2.39 -0.02 1.29 16 10 C 0.52 12.93 6.80 87.66 0.60 13.52 16 11 O -0.58 -20.12 15.16 -3.02 -0.05 -20.17 16 12 N -0.60 -14.10 2.47 -821.81 -2.03 -16.13 16 13 C 0.09 1.33 6.06 86.38 0.52 1.86 16 14 C -0.17 -2.13 10.22 71.98 0.74 -1.40 16 15 C 0.12 3.94 5.57 86.38 0.48 4.43 16 16 C 0.15 6.03 6.58 86.38 0.57 6.60 16 17 N -0.74 -38.47 5.60 -343.45 -1.92 -40.39 16 18 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.62 13.06 21.65 0.28 -59.34 16 22 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 C -0.14 -2.14 5.49 30.59 0.17 -1.97 16 27 C 0.52 10.66 7.38 87.85 0.65 11.31 16 28 O -0.56 -15.29 15.06 -3.02 -0.05 -15.33 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.74 7.75 -2.39 -0.02 0.72 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.16 6.64 -2.39 -0.02 1.15 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 1.04 6.65 -2.39 -0.02 1.03 16 37 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.58 6.86 -2.39 -0.02 1.57 16 42 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 43 H 0.11 0.90 5.75 -2.39 -0.01 0.89 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 0.75 6.21 -2.39 -0.01 0.73 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 48 H 0.06 2.26 7.36 -2.38 -0.02 2.25 16 49 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 50 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 51 H 0.37 20.47 7.67 -92.71 -0.71 19.76 16 52 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 53 H 0.10 1.81 7.89 -2.39 -0.02 1.79 16 54 H 0.13 1.46 7.24 -2.39 -0.02 1.45 16 Total: -1.00 -76.52 423.63 4.47 -72.05 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.16 Total: 28.86 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 7.43 Total: 13.87 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.06 Total: -127.41 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.09 Total: -35.50 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -76.52 4.47 -72.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699185154.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.885 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds