Wall clock time and date at job start Sat Apr 11 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47592 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99758 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00201 * 179.97438 * 5 4 3 8 8 C 1.46921 * 120.62879 * 359.72485 * 7 5 4 9 9 C 1.52765 * 109.00617 * 233.58020 * 8 7 5 10 10 C 1.53048 * 109.38423 * 305.59131 * 9 8 7 11 11 H 1.08996 * 109.45519 * 301.21577 * 10 9 8 12 12 N 1.46899 * 109.44452 * 181.25442 * 10 9 8 13 13 C 1.46899 * 111.00171 * 84.93711 * 12 10 9 14 14 C 1.50698 * 109.46898 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00475 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99688 * 179.97438 * 14 13 12 17 17 C 1.37106 * 119.99958 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99472 * 0.02562 * 17 16 14 19 19 C 1.38941 * 119.99990 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99995 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47223 * 59.99921 * 21 19 17 23 23 H 1.48501 * 109.47395 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46833 * 299.99682 * 21 19 17 25 25 C 1.53034 * 109.53880 * 61.23573 * 10 9 8 26 26 H 1.08996 * 109.49901 * 178.67961 * 25 10 9 27 27 C 1.53009 * 109.52167 * 58.60504 * 25 10 9 28 28 C 1.53004 * 109.46874 * 175.14353 * 27 25 10 29 29 C 1.46923 * 120.62868 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 38 38 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 39 39 H 1.08997 * 109.58723 * 353.41671 * 8 7 5 40 40 H 1.09004 * 109.58666 * 113.84430 * 8 7 5 41 41 H 1.08996 * 109.56746 * 185.55451 * 9 8 7 42 42 H 1.08997 * 109.38581 * 65.51311 * 9 8 7 43 43 H 1.00897 * 111.00066 * 320.97554 * 12 10 9 44 44 H 1.08998 * 109.47163 * 299.99847 * 13 12 10 45 45 H 1.09003 * 109.46730 * 60.00036 * 13 12 10 46 46 H 0.96997 * 120.00246 * 0.02562 * 16 14 13 47 47 H 0.97000 * 119.99777 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.46990 * 295.13996 * 27 25 10 49 49 H 1.08997 * 109.47411 * 55.14467 * 27 25 10 50 50 H 1.08999 * 109.47020 * 299.99624 * 28 27 25 51 51 H 1.09003 * 109.46962 * 60.00333 * 28 27 25 52 52 H 1.09005 * 109.46695 * 179.97438 * 28 27 25 53 53 H 1.08999 * 109.58770 * 246.15554 * 29 7 5 54 54 H 1.08998 * 109.59200 * 6.58353 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8634 -0.0013 6 8 3.2841 3.7852 -0.0008 7 7 5.3973 3.1097 -0.0014 8 6 6.3643 2.0036 0.0052 9 6 7.3363 2.1994 1.1673 10 6 7.9707 3.5888 1.0703 11 1 8.4906 3.6848 0.1172 12 7 8.9280 3.7672 2.1702 13 6 10.2416 3.2104 1.8203 14 6 11.1950 3.4121 2.9698 15 8 10.8173 3.9648 3.9812 16 7 12.4671 2.9773 2.8743 17 6 13.3344 3.1603 3.9203 18 1 12.9980 3.6525 4.8209 19 6 14.6460 2.7126 3.8218 20 7 15.0552 2.1133 2.7261 21 14 15.8275 2.9613 5.2472 22 1 15.3021 2.2701 6.4520 23 1 17.1553 2.3981 4.8936 24 1 15.9641 4.4129 5.5292 25 6 6.8794 4.6575 1.1657 26 1 7.3342 5.6470 1.1202 27 6 6.1260 4.5022 2.4884 28 6 5.1174 5.6430 2.6377 29 6 5.9022 4.4895 -0.0014 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.9336 0.9286 0.8891 38 1 3.9329 0.9289 -0.8909 39 1 5.8366 1.0577 0.1273 40 1 6.9182 1.9968 -0.9336 41 1 8.1164 1.4394 1.1227 42 1 6.7959 2.1112 2.1098 43 1 8.5780 3.3591 3.0240 44 1 10.1412 2.1449 1.6137 45 1 10.6271 3.7174 0.9357 46 1 12.7692 2.5350 2.0657 47 1 15.9708 1.8004 2.6575 48 1 5.5992 3.5481 2.4966 49 1 6.8346 4.5332 3.3160 50 1 5.6443 6.5972 2.6295 51 1 4.4087 5.6121 1.8101 52 1 4.5804 5.5322 3.5798 53 1 6.4176 4.6900 -0.9408 54 1 5.0698 5.1832 0.1164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699597995.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:46 Heat of formation + Delta-G solvation = -118.390682 kcal Electronic energy + Delta-G solvation = -30318.784977 eV Core-core repulsion = 26288.407575 eV Total energy + Delta-G solvation = -4030.377402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57747 -40.18259 -39.27717 -36.39329 -36.17644 -35.74141 -34.96269 -33.25403 -31.97576 -31.62369 -30.24761 -28.32843 -26.62833 -25.59338 -24.68099 -24.23879 -23.25317 -22.03014 -21.09762 -20.73777 -19.91748 -19.25840 -18.25176 -17.58965 -17.15436 -16.74740 -16.69425 -16.34912 -16.23010 -16.10530 -15.59275 -15.40927 -15.36944 -15.05638 -14.62122 -14.53398 -14.26722 -14.07994 -13.92282 -13.55779 -13.49656 -13.39872 -13.21801 -13.15672 -13.04859 -12.86901 -12.69751 -12.44622 -12.41085 -12.26079 -12.18740 -12.12118 -11.96539 -11.83473 -11.58880 -11.49666 -11.48006 -11.43707 -11.17442 -10.70397 -10.31111 -9.99824 -9.61621 -9.20163 -8.45527 -5.93955 1.40191 1.42284 1.52753 1.68503 2.06469 2.08035 2.29938 2.94258 3.22071 3.53147 3.53724 3.73039 3.88476 3.94701 4.02387 4.06898 4.09005 4.14604 4.32573 4.34570 4.39969 4.46500 4.47908 4.50871 4.58012 4.61140 4.64595 4.66617 4.70401 4.75067 4.77499 4.86665 4.94898 4.95623 4.99016 5.01313 5.08675 5.12395 5.21571 5.28108 5.29432 5.37103 5.40084 5.41876 5.44702 5.51008 5.63849 5.93764 6.17125 6.43289 6.48068 6.62237 7.14372 7.23484 7.58686 8.14491 8.71437 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.001960 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.530376 B =14280.873331 C =14884.687640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.135 4.135 5 C 0.507 3.493 6 O -0.586 6.586 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.165 4.165 10 C 0.096 3.904 11 H 0.090 0.910 12 N -0.676 5.676 13 C 0.067 3.933 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.082 4.082 26 H 0.078 0.922 27 C -0.108 4.108 28 C -0.148 4.148 29 C 0.116 3.884 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.343 0.657 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.051 0.949 52 H 0.048 0.952 53 H 0.079 0.921 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.448 -6.554 -11.407 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.140 4.140 4 C -0.175 4.175 5 C 0.298 3.702 6 O -0.467 6.467 7 N -0.339 5.339 8 C -0.010 4.010 9 C -0.205 4.205 10 C -0.014 4.014 11 H 0.108 0.892 12 N -0.307 5.307 13 C -0.065 4.065 14 C 0.224 3.776 15 O -0.512 6.512 16 N -0.210 5.210 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.102 4.102 26 H 0.097 0.903 27 C -0.146 4.146 28 C -0.205 4.205 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.162 0.838 44 H 0.088 0.912 45 H 0.121 0.879 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.097 0.903 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.722 -5.147 -10.976 25.753 hybrid contribution 0.851 -0.653 0.617 1.238 sum -21.870 -5.801 -10.359 24.885 Atomic orbital electron populations 1.21786 0.95946 1.01999 1.01567 1.21523 0.95970 0.95357 1.02928 1.21320 0.93373 0.97419 1.01874 1.21781 0.97410 0.92153 1.06127 1.21333 0.81585 0.92665 0.74651 1.90669 1.55854 1.48134 1.52021 1.48201 1.05654 1.07571 1.72431 1.21795 0.90509 0.89801 0.98932 1.22611 0.99779 0.98233 0.99887 1.21624 0.91682 0.93595 0.94497 0.89237 1.60146 1.01459 1.63063 1.06010 1.21550 0.89482 0.99680 0.95765 1.20985 0.83545 0.82812 0.90245 1.90496 1.77919 1.48262 1.34493 1.41923 1.09224 1.52695 1.17201 1.19613 0.92183 1.37699 0.96956 0.90494 1.25990 0.98680 0.96000 1.00458 1.69658 1.19207 1.39319 1.27783 0.85024 0.77137 0.78598 0.77788 1.19752 1.19450 1.19916 1.21432 0.94430 0.99668 0.94650 0.90327 1.21415 0.97431 0.98470 0.97256 1.21764 0.98942 0.98668 1.01160 1.21641 0.97469 0.83562 0.98048 0.91827 0.93324 0.93011 0.91211 0.90756 0.92781 0.93276 0.87219 0.86471 0.87165 0.89336 0.89638 0.91588 0.83813 0.91162 0.87925 0.76928 0.91320 0.92513 0.92754 0.92821 0.92999 0.93249 0.90281 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.19 5.93 30.59 0.18 -1.01 16 3 C -0.10 -1.45 4.50 30.59 0.14 -1.31 16 4 C -0.14 -1.58 4.05 29.84 0.12 -1.46 16 5 C 0.51 9.78 7.70 87.66 0.67 10.46 16 6 O -0.59 -16.34 15.40 -3.05 -0.05 -16.39 16 7 N -0.61 -9.89 2.34 -819.82 -1.92 -11.81 16 8 C 0.11 1.22 6.31 86.22 0.54 1.76 16 9 C -0.17 -2.51 4.97 30.53 0.15 -2.36 16 10 C 0.10 1.93 2.13 44.94 0.10 2.02 16 11 H 0.09 1.64 7.80 -2.39 -0.02 1.62 16 12 N -0.68 -19.57 5.42 -495.44 -2.69 -22.25 16 13 C 0.07 2.13 5.96 85.56 0.51 2.64 16 14 C 0.44 20.17 7.82 87.66 0.69 20.86 16 15 O -0.63 -34.24 15.78 -3.05 -0.05 -34.29 16 16 N -0.57 -28.75 5.29 -306.99 -1.62 -30.37 16 17 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 18 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 20 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 21 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 C -0.08 -1.71 2.38 -10.73 -0.03 -1.73 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 C -0.11 -2.49 4.67 30.60 0.14 -2.35 16 28 C -0.15 -3.42 9.68 71.98 0.70 -2.72 16 29 C 0.12 2.18 5.70 86.35 0.49 2.67 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 37 H 0.11 0.94 7.68 -2.39 -0.02 0.92 16 38 H 0.12 0.80 7.95 -2.39 -0.02 0.78 16 39 H 0.11 0.68 5.93 -2.39 -0.01 0.67 16 40 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.09 1.21 7.42 -2.39 -0.02 1.19 16 42 H 0.07 1.14 6.45 -2.39 -0.02 1.13 16 43 H 0.34 10.80 7.34 -89.70 -0.66 10.14 16 44 H 0.07 1.86 7.41 -2.39 -0.02 1.84 16 45 H 0.10 2.92 8.06 -2.39 -0.02 2.91 16 46 H 0.40 18.75 7.90 -92.71 -0.73 18.01 16 47 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 48 H 0.06 1.28 6.13 -2.39 -0.01 1.26 16 49 H 0.05 1.46 7.01 -2.39 -0.02 1.45 16 50 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.05 1.27 6.45 -2.39 -0.02 1.25 16 52 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 53 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 54 H 0.08 1.83 5.20 -2.39 -0.01 1.82 16 Total: -1.00 -71.34 416.86 1.90 -69.44 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.49 Total: 41.20 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.40 Total: 8.37 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -5.94 Total: -112.94 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.10 Total: -50.68 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.34 1.90 -69.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597995.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.952 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds