Wall clock time and date at job start Sat Apr 11 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47198 * 119.78397 * 2 1 4 4 C 1.52993 * 108.86529 * 108.22154 * 3 2 1 5 5 C 1.51773 * 110.88415 * 86.39412 * 4 3 2 6 6 C 1.51785 * 113.81336 * 292.99561 * 5 4 3 7 7 C 1.53060 * 110.74509 * 66.80574 * 6 5 4 8 8 H 1.09003 * 109.80016 * 155.28935 * 7 6 5 9 9 C 1.50701 * 109.63090 * 34.78673 * 7 6 5 10 10 O 1.21285 * 119.99959 * 216.27210 * 9 7 6 11 11 N 1.34781 * 119.99936 * 36.27491 * 9 7 6 12 12 C 1.46497 * 119.99927 * 183.76719 * 11 9 7 13 13 H 1.09007 * 109.46882 * 29.70545 * 12 11 9 14 14 C 1.52998 * 109.47059 * 149.70058 * 12 11 9 15 15 N 1.46507 * 109.47214 * 305.00075 * 14 12 11 16 16 C 1.36932 * 119.99970 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00406 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99833 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00254 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47053 * 89.99918 * 20 18 16 22 22 H 1.48499 * 109.47221 * 209.99893 * 20 18 16 23 23 H 1.48505 * 109.47266 * 330.00241 * 20 18 16 24 24 C 1.52997 * 109.47611 * 269.70472 * 12 11 9 25 25 C 1.52998 * 109.47172 * 65.31377 * 24 12 11 26 26 C 1.52998 * 109.47396 * 185.31637 * 24 12 11 27 27 C 1.53010 * 109.46759 * 305.31669 * 24 12 11 28 28 C 1.33371 * 119.78728 * 179.75195 * 2 1 3 29 29 O 1.21269 * 119.88761 * 0.28053 * 28 2 1 30 30 H 1.09000 * 109.46905 * 180.25180 * 1 2 3 31 31 H 1.09002 * 109.47004 * 300.24628 * 1 2 3 32 32 H 1.09001 * 109.47155 * 60.24871 * 1 2 3 33 33 H 1.09004 * 109.56177 * 348.37153 * 3 2 1 34 34 H 1.08995 * 109.58265 * 228.08063 * 3 2 1 35 35 H 1.09002 * 109.19451 * 326.02846 * 4 3 2 36 36 H 1.09003 * 109.15457 * 206.73678 * 4 3 2 37 37 H 1.09004 * 108.61342 * 171.87586 * 5 4 3 38 38 H 1.09003 * 108.61471 * 54.11574 * 5 4 3 39 39 H 1.09005 * 109.22552 * 306.47822 * 6 5 4 40 40 H 1.09000 * 109.22183 * 187.13090 * 6 5 4 41 41 H 0.96994 * 119.99861 * 3.77102 * 11 9 7 42 42 H 1.08995 * 109.46975 * 65.00388 * 14 12 11 43 43 H 1.09001 * 109.47620 * 185.00414 * 14 12 11 44 44 H 0.96998 * 119.99966 * 359.97438 * 15 14 12 45 45 H 0.97003 * 120.00218 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.47088 * 54.05222 * 25 24 12 47 47 H 1.09003 * 109.46939 * 174.05533 * 25 24 12 48 48 H 1.09004 * 109.47410 * 294.04787 * 25 24 12 49 49 H 1.09002 * 109.46791 * 60.00044 * 26 24 12 50 50 H 1.08998 * 109.46913 * 179.97438 * 26 24 12 51 51 H 1.08999 * 109.47141 * 299.99917 * 26 24 12 52 52 H 1.08998 * 109.46772 * 60.00079 * 27 24 12 53 53 H 1.08991 * 109.46903 * 180.02562 * 27 24 12 54 54 H 1.09002 * 109.46737 * 300.00014 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8348 1.4820 1.3751 5 6 4.1933 0.8089 1.4463 6 6 4.1307 -0.7062 1.3798 7 6 3.6418 -1.1688 0.0052 8 1 4.0004 -2.1788 -0.1936 9 6 4.1553 -0.2310 -1.0568 10 8 3.4626 0.0371 -2.0156 11 7 5.3844 0.3098 -0.9412 12 6 5.8516 1.2849 -1.9297 13 1 4.9990 1.8341 -2.3294 14 6 6.8209 2.2629 -1.2627 15 7 6.1739 2.8747 -0.0993 16 6 6.8537 3.7891 0.6601 17 1 7.8668 4.0597 0.4012 18 6 6.2409 4.3684 1.7627 19 7 5.0062 4.0390 2.0780 20 14 7.1685 5.6153 2.7991 21 1 6.9314 6.9795 2.2622 22 1 6.6901 5.5459 4.2032 23 1 8.6216 5.3120 2.7557 24 6 6.5668 0.5545 -3.0680 25 6 5.5648 -0.3246 -3.8190 26 6 7.1695 1.5785 -4.0319 27 6 7.6815 -0.3209 -2.4914 28 6 2.1276 -1.1575 0.0050 29 8 1.5153 -2.2042 0.0044 30 1 -0.3633 -1.0277 0.0045 31 1 -0.3633 0.5177 0.8878 32 1 -0.3633 0.5100 -0.8922 33 1 1.5044 2.0940 -0.2070 34 1 2.9731 1.2538 -0.7641 35 1 2.1839 1.0573 2.1393 36 1 2.9538 2.5498 1.5590 37 1 4.6756 1.0966 2.3805 38 1 4.8037 1.1686 0.6180 39 1 3.4462 -1.0711 2.1457 40 1 5.1244 -1.1148 1.5635 41 1 5.9596 0.0534 -0.2035 42 1 7.7141 1.7271 -0.9418 43 1 7.0995 3.0404 -1.9740 44 1 5.2640 2.6320 0.1331 45 1 4.5781 4.4436 2.8487 46 1 4.7176 0.2820 -4.1388 47 1 6.0486 -0.7623 -4.6922 48 1 5.2145 -1.1199 -3.1610 49 1 7.8834 2.2048 -3.4968 50 1 7.6794 1.0581 -4.8426 51 1 6.3755 2.2021 -4.4426 52 1 7.2520 -1.0504 -1.8048 53 1 8.1913 -0.8408 -3.3024 54 1 8.3953 0.3055 -1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700998564.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:07 Heat of formation + Delta-G solvation = -56.625643 kcal Electronic energy + Delta-G solvation = -34077.885076 eV Core-core repulsion = 30050.186007 eV Total energy + Delta-G solvation = -4027.699069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.72887 -40.58596 -38.72958 -37.50448 -36.29732 -35.87456 -34.22972 -32.83421 -32.25207 -29.35486 -29.22098 -28.10162 -27.84452 -26.68556 -25.62353 -24.87720 -23.20002 -22.38298 -21.36766 -20.28235 -19.72002 -19.05584 -18.35420 -17.85014 -17.62739 -16.90656 -16.43516 -16.34674 -16.23434 -15.62954 -15.54925 -15.14432 -14.88462 -14.77096 -14.67368 -14.54125 -14.41892 -14.14094 -14.05747 -13.64759 -13.57731 -13.35285 -13.09078 -12.95255 -12.89568 -12.82630 -12.71484 -12.64870 -12.43056 -12.34858 -12.08368 -11.93453 -11.80493 -11.64598 -11.58881 -11.45487 -11.32564 -11.19904 -10.99782 -10.81573 -10.65135 -9.74197 -9.61903 -8.80945 -7.77319 -5.04143 1.43508 1.52202 1.53989 1.57541 1.61972 2.03348 2.25042 2.65390 3.25923 3.54938 3.60103 3.72021 3.76478 3.88984 3.94957 4.04691 4.11614 4.21448 4.29880 4.36301 4.41683 4.46652 4.49958 4.55139 4.60080 4.68475 4.70752 4.84293 4.86491 4.87982 4.89008 4.98240 5.01233 5.04035 5.08130 5.11772 5.13736 5.21740 5.29634 5.32219 5.37433 5.45273 5.46383 5.58272 5.58691 5.65841 5.69303 5.76520 6.32428 6.43128 6.50120 7.04327 7.16967 7.52780 8.23387 8.52013 9.41460 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.005838 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.221259 B = 4794.903936 C = 7028.400977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.592 5.592 3 C 0.084 3.916 4 C -0.122 4.122 5 C -0.146 4.146 6 C -0.104 4.104 7 C -0.125 4.125 8 H 0.146 0.854 9 C 0.537 3.463 10 O -0.556 6.556 11 N -0.694 5.694 12 C 0.154 3.846 13 H 0.065 0.935 14 C 0.140 3.860 15 N -0.741 5.741 16 C -0.243 4.243 17 H 0.068 0.932 18 C -0.053 4.053 19 N -0.935 5.935 20 Si 0.953 3.047 21 H -0.299 1.299 22 H -0.301 1.301 23 H -0.278 1.278 24 C -0.070 4.070 25 C -0.122 4.122 26 C -0.140 4.140 27 C -0.139 4.139 28 C 0.535 3.465 29 O -0.590 6.590 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.412 0.588 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.385 0.615 45 H 0.246 0.754 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.048 0.952 52 H 0.055 0.945 53 H 0.066 0.934 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -9.242 -6.426 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.321 5.321 3 C -0.038 4.038 4 C -0.160 4.160 5 C -0.184 4.184 6 C -0.142 4.142 7 C -0.149 4.149 8 H 0.164 0.836 9 C 0.325 3.675 10 O -0.437 6.437 11 N -0.346 5.346 12 C 0.049 3.951 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.388 5.388 16 C -0.375 4.375 17 H 0.086 0.914 18 C -0.247 4.247 19 N -0.584 5.584 20 Si 0.785 3.215 21 H -0.227 1.227 22 H -0.228 1.228 23 H -0.203 1.203 24 C -0.072 4.072 25 C -0.179 4.179 26 C -0.198 4.198 27 C -0.196 4.196 28 C 0.323 3.677 29 O -0.472 6.472 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.251 0.749 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.222 0.778 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.067 0.933 52 H 0.074 0.926 53 H 0.085 0.915 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.149 -9.432 -7.041 11.772 hybrid contribution 0.038 0.986 1.294 1.627 sum 0.187 -8.446 -5.748 10.218 Atomic orbital electron populations 1.21840 0.78583 1.03741 1.02673 1.47629 1.07770 1.06304 1.70395 1.22512 0.97877 0.84132 0.99252 1.21551 0.96463 1.02578 0.95423 1.21670 0.98149 0.93162 1.05379 1.21370 1.03515 0.96762 0.92572 1.21964 0.92671 1.02911 0.97385 0.83632 1.19936 0.81542 0.80237 0.85771 1.90718 1.57690 1.61901 1.33386 1.46189 1.15985 1.42974 1.29491 1.21216 0.96660 0.88570 0.88641 0.91670 1.21239 0.94634 0.93727 0.89102 1.42743 1.16249 1.49682 1.30152 1.19398 0.97022 1.15594 1.05534 0.91379 1.25178 0.97290 1.02105 1.00155 1.69698 1.12565 1.47013 1.29118 0.85465 0.78303 0.79636 0.78057 1.22737 1.22842 1.20343 1.20849 0.95865 0.96114 0.94363 1.21736 0.97878 0.98842 0.99458 1.21897 1.00655 0.98353 0.98864 1.21884 0.97346 0.99246 1.01138 1.19935 0.89748 0.83213 0.74811 1.90636 1.70225 1.32616 1.53716 0.90509 0.90562 0.91074 0.89802 0.88852 0.92817 0.90284 0.92592 0.88086 0.90893 0.87581 0.74928 0.94005 0.94520 0.77809 0.94459 0.94020 0.91979 0.94122 0.91930 0.91018 0.93284 0.92583 0.91490 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 10.59 127.77 1.35 3.28 16 2 N -0.59 -18.41 2.73 -846.06 -2.31 -20.72 16 3 C 0.08 2.70 5.61 86.24 0.48 3.18 16 4 C -0.12 -4.07 5.74 30.19 0.17 -3.90 16 5 C -0.15 -4.66 4.75 29.79 0.14 -4.51 16 6 C -0.10 -2.65 4.82 30.21 0.15 -2.50 16 7 C -0.13 -3.44 3.09 -12.03 -0.04 -3.48 16 8 H 0.15 3.43 8.13 -2.39 -0.02 3.41 16 9 C 0.54 15.74 3.06 87.66 0.27 16.01 16 10 O -0.56 -19.26 11.63 -3.04 -0.04 -19.29 16 11 N -0.69 -18.61 1.69 -442.53 -0.75 -19.36 16 12 C 0.15 4.40 1.67 44.99 0.08 4.47 16 13 H 0.07 2.22 7.47 -2.38 -0.02 2.21 16 14 C 0.14 4.61 5.04 86.38 0.44 5.05 16 15 N -0.74 -31.42 5.15 -343.45 -1.77 -33.19 16 16 C -0.24 -11.85 9.99 84.03 0.84 -11.01 16 17 H 0.07 3.26 7.83 -2.91 -0.02 3.24 16 18 C -0.05 -2.66 5.50 84.86 0.47 -2.19 16 19 N -0.93 -48.23 12.38 21.65 0.27 -47.96 16 20 Si 0.95 42.48 29.55 68.60 2.03 44.51 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.07 -1.62 0.62 -52.18 -0.03 -1.65 16 25 C -0.12 -2.98 7.05 71.98 0.51 -2.48 16 26 C -0.14 -2.97 7.98 71.98 0.57 -2.39 16 27 C -0.14 -2.72 8.02 71.99 0.58 -2.14 16 28 C 0.54 17.80 5.87 88.11 0.52 18.32 16 29 O -0.59 -22.63 16.35 -2.99 -0.05 -22.68 16 30 H 0.08 2.13 6.85 -2.39 -0.02 2.12 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 2.55 7.96 -2.38 -0.02 2.53 16 34 H 0.09 3.29 3.43 -2.47 -0.01 3.28 16 35 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 36 H 0.08 3.13 7.45 -2.39 -0.02 3.12 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 3.37 1.49 -2.39 0.00 3.37 16 39 H 0.07 1.87 7.86 -2.38 -0.02 1.85 16 40 H 0.11 2.10 7.99 -2.39 -0.02 2.08 16 41 H 0.41 10.29 6.94 -92.71 -0.64 9.65 16 42 H 0.04 1.31 6.36 -2.39 -0.02 1.29 16 43 H 0.04 1.25 6.65 -2.39 -0.02 1.23 16 44 H 0.38 16.80 4.82 -92.71 -0.45 16.36 16 45 H 0.25 12.77 8.31 -92.71 -0.77 12.00 16 46 H 0.04 1.18 7.65 -2.39 -0.02 1.16 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.04 1.07 6.53 -2.38 -0.02 1.05 16 49 H 0.06 1.35 6.46 -2.39 -0.02 1.33 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.06 1.07 7.41 -2.39 -0.02 1.05 16 53 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.06 1.23 6.47 -2.39 -0.02 1.21 16 Total: -1.00 -60.24 389.33 3.70 -56.53 By element: Atomic # 1 Polarization: 48.29 SS G_CDS: -0.17 Total: 48.12 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.49 Total: 14.05 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -4.56 Total: -121.24 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.08 Total: -41.97 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.24 3.70 -56.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700998564.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.093 kcal (2) G-P(sol) polarization free energy of solvation -60.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds