Wall clock time and date at job start Sat Apr 11 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99838 * 2 1 3 5 5 C 1.50703 * 109.47084 * 119.99671 * 2 1 3 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99944 * 180.02562 * 5 2 1 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 2 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00161 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00271 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47051 * 325.00592 * 13 12 10 15 15 C 1.53002 * 109.46916 * 85.00139 * 13 12 10 16 16 C 1.52997 * 109.47086 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47347 * 300.00270 * 16 15 13 18 18 C 1.53002 * 109.47248 * 59.99829 * 17 16 15 19 19 H 1.09005 * 109.46885 * 60.00012 * 18 17 16 20 20 N 1.46499 * 109.47262 * 179.97438 * 18 17 16 21 21 C 1.36933 * 120.00298 * 274.99947 * 20 18 17 22 22 H 1.07997 * 119.99781 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00348 * 179.97438 * 21 20 18 24 24 N 1.31608 * 120.00285 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99581 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46909 * 89.99850 * 25 23 21 27 27 H 1.48500 * 109.46674 * 209.99533 * 25 23 21 28 28 H 1.48501 * 109.47142 * 329.99456 * 25 23 21 29 29 C 1.52997 * 109.47387 * 205.00329 * 13 12 10 30 30 H 1.09001 * 109.47375 * 300.00370 * 1 2 3 31 31 H 1.09000 * 109.47140 * 60.00388 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47108 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47368 * 299.99783 * 3 2 1 35 35 H 1.09001 * 109.47372 * 59.99628 * 3 2 1 36 36 H 1.09002 * 109.47067 * 299.99853 * 4 2 1 37 37 H 1.08992 * 109.47461 * 60.00154 * 4 2 1 38 38 H 1.09004 * 109.46930 * 179.97438 * 4 2 1 39 39 H 0.97000 * 119.99708 * 359.97438 * 7 5 2 40 40 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 41 41 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 42 42 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 43 43 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 44 44 H 0.97005 * 119.99463 * 0.02562 * 12 10 9 45 45 H 1.08997 * 109.47739 * 300.00238 * 15 13 12 46 46 H 1.09005 * 109.46885 * 60.00263 * 15 13 12 47 47 H 1.08999 * 109.47103 * 180.02562 * 16 15 13 48 48 H 1.09005 * 109.46998 * 60.00388 * 16 15 13 49 49 H 1.09005 * 109.47168 * 300.00014 * 17 16 15 50 50 H 1.09000 * 109.47324 * 179.97438 * 17 16 15 51 51 H 0.97005 * 119.99825 * 95.00257 * 20 18 17 52 52 H 0.97003 * 119.99735 * 180.02562 * 24 23 21 53 53 H 1.09005 * 109.47168 * 300.00198 * 29 13 12 54 54 H 1.08999 * 109.47176 * 60.00036 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8330 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3757 -1.5228 2.6407 10 6 5.8780 -2.2331 3.8712 11 8 5.0899 -2.6952 4.6688 12 7 7.2031 -2.3557 4.0849 13 6 7.6914 -3.0457 5.2813 14 1 7.0186 -2.8468 6.1155 15 6 7.7435 -4.5516 5.0160 16 6 8.2542 -5.2722 6.2654 17 6 9.6565 -4.7660 6.6088 18 6 9.6044 -3.2601 6.8741 19 1 8.9319 -3.0613 7.7086 20 7 10.9471 -2.7755 7.2035 21 6 11.4065 -2.8536 8.4911 22 1 10.7790 -3.2727 9.2638 23 6 12.6789 -2.3949 8.8032 24 7 13.1206 -2.4704 10.0407 25 14 13.7644 -1.6705 7.4665 26 1 13.5289 -0.2070 7.3766 27 1 15.1903 -1.9230 7.7959 28 1 13.4371 -2.3055 6.1647 29 6 9.0937 -2.5396 5.6254 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2076 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 3.9877 -0.4644 0.8055 40 1 3.4828 -2.5519 2.6394 41 1 3.4819 -1.0108 3.5301 42 1 5.7399 -2.0358 1.7505 43 1 5.7382 -0.4949 2.6415 44 1 7.8334 -1.9864 3.4467 45 1 6.7446 -4.9123 4.7709 46 1 8.4164 -4.7505 4.1818 47 1 8.2917 -6.3450 6.0762 48 1 7.5816 -5.0734 7.0998 49 1 10.3291 -4.9649 5.7743 50 1 10.0201 -5.2791 7.4991 51 1 11.5108 -2.3993 6.5095 52 1 14.0097 -2.1495 10.2587 53 1 9.7666 -2.7385 4.7912 54 1 9.0566 -1.4668 5.8144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713377164.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:21 Heat of formation + Delta-G solvation = -122.953678 kcal Electronic energy + Delta-G solvation = -29395.675849 eV Core-core repulsion = 25365.100581 eV Total energy + Delta-G solvation = -4030.575268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36361 -40.95699 -39.39629 -36.70545 -36.46134 -36.15589 -34.83078 -33.28636 -32.13611 -30.63722 -29.62565 -28.19000 -28.05264 -25.81502 -25.34798 -23.51559 -23.15476 -22.42556 -21.42454 -21.03716 -20.36992 -19.54073 -18.14211 -17.78119 -17.36711 -17.03800 -16.76507 -16.43195 -16.14541 -15.88522 -15.41021 -15.25138 -15.19317 -14.96445 -14.83992 -14.73901 -14.52754 -14.39391 -14.13216 -13.69981 -13.49881 -13.30253 -13.05074 -13.02863 -12.99864 -12.88134 -12.82936 -12.61133 -12.47368 -12.35526 -12.17835 -12.04228 -11.89614 -11.83847 -11.80246 -11.66719 -11.51816 -11.44251 -10.94096 -10.90217 -10.67434 -10.18306 -10.02522 -9.30422 -8.00640 -5.34709 1.38536 1.43862 1.51225 1.61204 1.65308 1.87031 2.44252 2.50577 3.30114 3.46625 3.55505 3.68673 3.84583 3.86616 3.91173 3.93705 4.02904 4.08458 4.19214 4.27810 4.28673 4.38025 4.50009 4.55582 4.56338 4.65192 4.71760 4.74485 4.75581 4.83841 4.84484 4.90797 4.96576 4.97664 4.98692 5.03120 5.12893 5.15262 5.19584 5.23648 5.34326 5.34762 5.36572 5.39292 5.48357 5.49867 5.62386 5.79147 6.23018 6.51434 6.61275 7.09884 7.24015 7.31145 7.84806 8.06099 9.21131 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.001709 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.513071 B =16376.569272 C =17027.243487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.513 3.487 6 O -0.592 6.592 7 N -0.712 5.712 8 C 0.137 3.863 9 C -0.136 4.136 10 C 0.511 3.489 11 O -0.589 6.589 12 N -0.709 5.709 13 C 0.156 3.844 14 H 0.061 0.939 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.178 3.822 19 H 0.031 0.969 20 N -0.748 5.748 21 C -0.231 4.231 22 H 0.049 0.951 23 C -0.068 4.068 24 N -0.987 5.987 25 Si 0.961 3.039 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.245 1.245 29 C -0.117 4.117 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.419 0.581 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.419 0.581 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.065 0.935 50 H 0.034 0.966 51 H 0.368 0.632 52 H 0.257 0.743 53 H 0.089 0.911 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.729 6.473 -32.340 37.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.086 4.086 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.300 3.700 6 O -0.471 6.471 7 N -0.365 5.365 8 C 0.013 3.987 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.469 6.469 12 N -0.360 5.360 13 C 0.050 3.950 14 H 0.079 0.921 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.168 4.168 18 C 0.070 3.930 19 H 0.049 0.951 20 N -0.391 5.391 21 C -0.362 4.362 22 H 0.068 0.932 23 C -0.259 4.259 24 N -0.638 5.638 25 Si 0.787 3.213 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.169 1.169 29 C -0.156 4.156 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.258 0.742 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.256 0.744 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.053 0.947 51 H 0.201 0.799 52 H 0.066 0.934 53 H 0.107 0.893 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.825 5.790 -30.985 37.238 hybrid contribution 1.292 0.352 0.255 1.363 sum -18.533 6.142 -30.730 36.408 Atomic orbital electron populations 1.21695 0.92827 1.01885 1.02386 1.20877 0.97520 0.97527 0.92650 1.21900 1.02369 0.92028 1.03309 1.21894 1.02378 0.99855 0.95403 1.21358 0.82178 0.78717 0.87724 1.90709 1.56810 1.50546 1.49076 1.45802 1.07112 1.58376 1.25224 1.20803 0.93547 0.96878 0.87503 1.21759 0.94179 1.04596 0.97026 1.21027 0.82242 0.79104 0.87781 1.90758 1.56471 1.50672 1.48967 1.45907 1.06946 1.58007 1.25183 1.20694 0.94411 0.92097 0.87783 0.92089 1.21802 1.01200 0.93905 0.98438 1.21420 0.95620 1.00191 0.97580 1.22079 0.96845 0.97268 1.00560 1.20279 0.85092 0.92483 0.95182 0.95050 1.42693 1.15031 1.75261 1.06155 1.18999 0.98232 1.32784 0.86194 0.93245 1.25577 0.99105 1.02618 0.98620 1.69906 1.19264 1.54726 1.19877 0.85331 0.77451 0.78631 0.79855 1.20351 1.22651 1.16906 1.21905 0.95212 1.00296 0.98194 0.93789 0.89447 0.93672 0.90174 0.89341 0.93425 0.93277 0.89374 0.90144 0.74242 0.93217 0.93576 0.84377 0.84812 0.74354 0.92376 0.89918 0.90692 0.93179 0.91581 0.94677 0.79870 0.93443 0.89259 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 7.76 71.98 0.56 -1.11 16 2 C -0.08 -0.83 0.87 -52.93 -0.05 -0.88 16 3 C -0.14 -0.75 8.37 71.98 0.60 -0.15 16 4 C -0.14 -0.68 8.37 71.98 0.60 -0.08 16 5 C 0.51 9.17 6.48 87.66 0.57 9.74 16 6 O -0.59 -17.44 15.98 -3.02 -0.05 -17.49 16 7 N -0.71 -8.25 5.34 -463.05 -2.47 -10.72 16 8 C 0.14 2.32 4.96 86.38 0.43 2.74 16 9 C -0.14 -1.20 5.81 29.85 0.17 -1.03 16 10 C 0.51 9.76 7.79 87.66 0.68 10.45 16 11 O -0.59 -18.02 15.65 -3.02 -0.05 -18.06 16 12 N -0.71 -11.40 5.08 -442.55 -2.25 -13.65 16 13 C 0.16 3.64 2.45 44.99 0.11 3.75 16 14 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 15 C -0.11 -2.59 5.49 30.59 0.17 -2.42 16 16 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 17 C -0.13 -4.18 5.50 30.59 0.17 -4.01 16 18 C 0.18 6.42 2.77 44.97 0.12 6.54 16 19 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 20 N -0.75 -33.46 4.93 -323.02 -1.59 -35.05 16 21 C -0.23 -13.10 10.41 84.03 0.87 -12.22 16 22 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 24 N -0.99 -63.50 13.97 21.65 0.30 -63.20 16 25 Si 0.96 44.19 27.74 68.60 1.90 46.09 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.24 -9.82 6.52 99.48 0.65 -9.17 16 29 C -0.12 -2.99 4.86 30.58 0.15 -2.85 16 30 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.08 0.12 7.56 -2.38 -0.02 0.10 16 34 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.08 0.08 7.57 -2.38 -0.02 0.06 16 39 H 0.42 1.22 7.31 -92.71 -0.68 0.54 16 40 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.42 3.54 8.60 -92.70 -0.80 2.74 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.37 15.26 5.66 -92.70 -0.52 14.74 16 52 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 53 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 54 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -86.29 426.00 0.44 -85.85 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -1.17 Total: 23.99 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.81 Total: 2.24 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -6.01 Total: -122.63 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.10 Total: -35.55 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Total: -86.29 0.44 -85.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713377164.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.102 kcal (2) G-P(sol) polarization free energy of solvation -86.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds