Wall clock time and date at job start Sat Apr 11 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 C 1.52993 * 109.47354 * 239.99723 * 2 1 3 5 5 C 1.50698 * 109.46773 * 119.99671 * 2 1 3 6 6 O 1.21283 * 120.00326 * 359.97438 * 5 2 1 7 7 N 1.34779 * 119.99830 * 180.02562 * 5 2 1 8 8 C 1.46505 * 119.99822 * 180.02562 * 7 5 2 9 9 C 1.53000 * 109.46766 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46962 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99671 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99809 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47086 * 324.99911 * 13 12 10 15 15 C 1.53009 * 109.47153 * 84.99977 * 13 12 10 16 16 C 1.52995 * 109.47219 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46877 * 299.99909 * 16 15 13 18 18 C 1.52995 * 109.47518 * 60.00006 * 17 16 15 19 19 H 1.08999 * 109.47559 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.46824 * 59.99852 * 18 17 16 21 21 C 1.36938 * 119.99589 * 85.00438 * 20 18 17 22 22 H 1.07999 * 120.00325 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99408 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00325 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99550 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47397 * 90.00455 * 25 23 21 27 27 H 1.48510 * 109.46813 * 210.00284 * 25 23 21 28 28 H 1.48495 * 109.47179 * 329.99902 * 25 23 21 29 29 C 1.52999 * 109.47333 * 204.99758 * 13 12 10 30 30 H 1.08997 * 109.47228 * 300.00747 * 1 2 3 31 31 H 1.09006 * 109.46658 * 60.00366 * 1 2 3 32 32 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46710 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46608 * 299.99340 * 3 2 1 35 35 H 1.08993 * 109.47222 * 59.99596 * 3 2 1 36 36 H 1.09004 * 109.47258 * 300.00277 * 4 2 1 37 37 H 1.09002 * 109.47576 * 59.99882 * 4 2 1 38 38 H 1.09001 * 109.47510 * 180.02562 * 4 2 1 39 39 H 0.96998 * 120.00041 * 359.97438 * 7 5 2 40 40 H 1.08994 * 109.47105 * 59.99666 * 8 7 5 41 41 H 1.08997 * 109.46731 * 299.99212 * 8 7 5 42 42 H 1.09004 * 109.47165 * 60.00172 * 9 8 7 43 43 H 1.08993 * 109.47437 * 299.99842 * 9 8 7 44 44 H 0.96998 * 120.00250 * 359.97438 * 12 10 9 45 45 H 1.09002 * 109.47127 * 59.99436 * 15 13 12 46 46 H 1.08997 * 109.46495 * 299.99950 * 15 13 12 47 47 H 1.08997 * 109.47205 * 180.02562 * 16 15 13 48 48 H 1.09002 * 109.47726 * 59.99564 * 16 15 13 49 49 H 1.09002 * 109.47088 * 299.99983 * 17 16 15 50 50 H 1.09003 * 109.47066 * 180.02562 * 17 16 15 51 51 H 0.96995 * 120.00050 * 264.72646 * 20 18 17 52 52 H 0.97000 * 119.99693 * 180.02562 * 24 23 21 53 53 H 1.08994 * 109.46947 * 59.99645 * 29 13 12 54 54 H 1.09002 * 109.47159 * 300.00108 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2305 6 8 1.2441 -1.1708 2.0291 7 7 3.3573 -0.8330 1.4441 8 6 3.8456 -1.5241 2.6401 9 6 5.3756 -1.5240 2.6402 10 6 5.8779 -2.2343 3.8707 11 8 5.0897 -2.6956 4.6688 12 7 7.2029 -2.3569 4.0843 13 6 7.6912 -3.0469 5.2809 14 1 7.0184 -2.8479 6.1150 15 6 7.7433 -4.5529 5.0156 16 6 8.2526 -5.2736 6.2654 17 6 9.6549 -4.7677 6.6099 18 6 9.6029 -3.2618 6.8752 19 1 10.6018 -2.9014 7.1211 20 7 8.6981 -2.9943 7.9960 21 6 9.1605 -3.0721 9.2826 22 1 10.1919 -3.3310 9.4712 23 6 8.3033 -2.8182 10.3446 24 7 7.0462 -2.5032 10.1149 25 14 8.9337 -2.9250 12.0998 26 1 9.4493 -1.5980 12.5222 27 1 7.8257 -3.3349 12.9996 28 1 10.0272 -3.9270 12.1729 29 6 9.0936 -2.5410 5.6249 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1301 -0.7217 -1.2489 39 1 3.9877 -0.4645 0.8056 40 1 3.4827 -2.5518 2.6395 41 1 3.4819 -1.0108 3.5302 42 1 5.7389 -0.4963 2.6406 43 1 5.7390 -2.0374 1.7501 44 1 7.8333 -1.9883 3.4459 45 1 8.4160 -4.7519 4.1814 46 1 6.7442 -4.9133 4.7706 47 1 8.2901 -6.3464 6.0763 48 1 7.5795 -5.0746 7.0994 49 1 10.3280 -4.9667 5.7760 50 1 10.0180 -5.2814 7.5001 51 1 7.7727 -2.7582 7.8266 52 1 6.4474 -2.3254 10.8570 53 1 9.0565 -1.4681 5.8138 54 1 9.7664 -2.7399 4.7907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713377166.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:27 Heat of formation + Delta-G solvation = -122.444679 kcal Electronic energy + Delta-G solvation = -29944.872108 eV Core-core repulsion = 25914.318912 eV Total energy + Delta-G solvation = -4030.553196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37023 -40.96849 -39.43926 -36.68978 -36.36697 -35.94860 -34.71090 -32.74160 -32.11675 -30.44249 -29.56452 -28.18604 -28.05319 -25.85994 -25.58860 -23.49205 -23.29391 -22.72477 -21.51663 -20.53072 -19.90005 -19.22167 -18.17518 -17.76371 -17.18835 -17.04217 -16.80404 -16.52069 -16.12589 -15.75877 -15.40042 -15.31171 -15.15244 -15.13292 -14.91537 -14.70550 -14.43948 -14.13966 -13.69291 -13.43384 -13.39303 -13.30270 -13.04109 -13.01144 -12.87873 -12.83593 -12.82706 -12.61146 -12.59108 -12.47702 -12.16172 -12.14721 -11.89797 -11.83875 -11.80621 -11.56163 -11.45706 -11.19083 -10.88766 -10.81860 -10.65076 -10.19537 -9.97471 -8.95557 -7.91045 -5.18635 1.44848 1.46930 1.55158 1.60612 1.67818 1.88104 2.47133 2.57223 3.42278 3.54780 3.67326 3.78141 3.86436 3.90198 3.93710 3.99419 4.07033 4.12726 4.21636 4.28479 4.38419 4.46865 4.50098 4.62434 4.71447 4.71809 4.74909 4.78269 4.82555 4.83477 4.84242 4.90108 4.96624 4.98130 5.02674 5.03555 5.11520 5.23118 5.24342 5.32270 5.34250 5.37070 5.38184 5.45034 5.48955 5.54685 5.66719 5.68407 6.30769 6.51750 6.65162 7.24478 7.36097 7.37768 8.16816 8.36364 9.32500 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.001981 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.284310 B =14131.797417 C =15079.251698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.510 3.490 6 O -0.594 6.594 7 N -0.710 5.710 8 C 0.137 3.863 9 C -0.131 4.131 10 C 0.503 3.497 11 O -0.594 6.594 12 N -0.706 5.706 13 C 0.150 3.850 14 H 0.038 0.962 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.125 4.125 18 C 0.165 3.835 19 H 0.055 0.945 20 N -0.734 5.734 21 C -0.229 4.229 22 H 0.079 0.921 23 C -0.085 4.085 24 N -0.974 5.974 25 Si 0.970 3.030 26 H -0.287 1.287 27 H -0.303 1.303 28 H -0.267 1.267 29 C -0.113 4.113 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.420 0.580 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.420 0.580 45 H 0.095 0.905 46 H 0.039 0.961 47 H 0.066 0.934 48 H 0.024 0.976 49 H 0.088 0.912 50 H 0.038 0.962 51 H 0.369 0.631 52 H 0.246 0.754 53 H 0.060 0.940 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 6.397 -32.194 32.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.298 3.702 6 O -0.474 6.474 7 N -0.363 5.363 8 C 0.012 3.988 9 C -0.171 4.171 10 C 0.290 3.710 11 O -0.474 6.474 12 N -0.358 5.358 13 C 0.045 3.955 14 H 0.056 0.944 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.165 4.165 18 C 0.056 3.944 19 H 0.073 0.927 20 N -0.375 5.375 21 C -0.361 4.361 22 H 0.097 0.903 23 C -0.276 4.276 24 N -0.626 5.626 25 Si 0.800 3.200 26 H -0.215 1.215 27 H -0.230 1.230 28 H -0.192 1.192 29 C -0.152 4.152 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.258 0.742 45 H 0.113 0.887 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.106 0.894 50 H 0.056 0.944 51 H 0.202 0.798 52 H 0.055 0.945 53 H 0.079 0.921 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.816 5.726 -30.931 31.467 hybrid contribution -0.302 0.036 1.632 1.660 sum -1.118 5.761 -29.299 29.881 Atomic orbital electron populations 1.21698 0.92830 1.01869 1.02403 1.20884 0.97522 0.97561 0.92523 1.21903 1.02409 0.91945 1.03324 1.21893 1.02421 0.99820 0.95320 1.21456 0.82146 0.78735 0.87843 1.90718 1.56861 1.50620 1.49153 1.45771 1.07157 1.58340 1.25038 1.20776 0.93795 0.96758 0.87483 1.21742 0.93973 1.04562 0.96799 1.21207 0.82549 0.79293 0.87914 1.90802 1.56724 1.50768 1.49119 1.45869 1.06774 1.58031 1.25106 1.20713 0.95688 0.92196 0.86887 0.94376 1.21737 1.00513 0.93991 0.98464 1.21301 0.97374 0.99212 0.96767 1.22050 0.96176 0.97755 1.00522 1.20545 0.93496 0.93508 0.86838 0.92737 1.42760 1.10281 1.82969 1.01522 1.19662 0.95137 1.36687 0.84600 0.90303 1.25564 0.96064 1.04091 1.01885 1.69862 1.05369 1.56491 1.30882 0.85180 0.76738 0.77749 0.80375 1.21460 1.23010 1.19200 1.21948 0.94783 0.99796 0.98624 0.93940 0.89213 0.93732 0.90116 0.89096 0.93594 0.93342 0.89149 0.90069 0.74127 0.93427 0.94116 0.84687 0.83900 0.74171 0.88670 0.94230 0.91570 0.95717 0.89388 0.94357 0.79793 0.94491 0.92099 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.76 71.98 0.56 -1.44 16 2 C -0.08 -1.04 0.87 -52.93 -0.05 -1.08 16 3 C -0.14 -1.07 8.37 71.98 0.60 -0.46 16 4 C -0.14 -0.95 8.37 71.98 0.60 -0.35 16 5 C 0.51 11.00 6.48 87.66 0.57 11.57 16 6 O -0.59 -20.09 15.98 -3.04 -0.05 -20.13 16 7 N -0.71 -10.96 5.34 -463.06 -2.47 -13.44 16 8 C 0.14 3.05 4.96 86.38 0.43 3.48 16 9 C -0.13 -1.81 5.81 29.85 0.17 -1.64 16 10 C 0.50 13.26 7.79 87.66 0.68 13.94 16 11 O -0.59 -24.14 15.65 -3.04 -0.05 -24.18 16 12 N -0.71 -15.53 5.08 -442.51 -2.25 -17.78 16 13 C 0.15 4.67 2.28 44.99 0.10 4.77 16 14 H 0.04 1.69 5.94 -2.39 -0.01 1.68 16 15 C -0.11 -3.19 5.49 30.60 0.17 -3.02 16 16 C -0.11 -3.74 5.77 30.59 0.18 -3.57 16 17 C -0.13 -4.09 5.61 30.59 0.17 -3.92 16 18 C 0.16 6.02 3.10 45.00 0.14 6.16 16 19 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 20 N -0.73 -36.95 4.28 -322.86 -1.38 -38.33 16 21 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 24 N -0.97 -63.18 13.06 21.65 0.28 -62.90 16 25 Si 0.97 47.86 29.55 68.60 2.03 49.89 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 28 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 29 C -0.11 -3.14 5.08 30.61 0.16 -2.98 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 33 H 0.08 0.29 7.56 -2.39 -0.02 0.28 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 38 H 0.08 0.23 7.56 -2.39 -0.02 0.21 16 39 H 0.42 2.50 7.31 -92.71 -0.68 1.82 16 40 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.42 4.98 8.60 -92.71 -0.80 4.18 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.02 1.10 7.60 -2.39 -0.02 1.08 16 49 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.37 20.85 6.06 -92.71 -0.56 20.29 16 52 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 53 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -90.66 424.69 0.75 -89.91 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -1.15 Total: 32.02 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.79 Total: 4.95 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -5.82 Total: -132.44 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.10 Total: -44.32 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -90.66 0.75 -89.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713377166.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.539 kcal (2) G-P(sol) polarization free energy of solvation -90.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds