Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 110.99915 * 2 1 4 4 C 1.53002 * 109.47307 * 66.04661 * 3 2 1 5 5 N 1.46499 * 109.47088 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 3 7 7 C 1.34777 * 120.00199 * 89.99979 * 5 4 3 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 5 4 10 10 C 1.52996 * 109.47159 * 179.72352 * 9 7 5 11 11 C 1.53002 * 109.46949 * 300.00134 * 10 9 7 12 12 C 1.53006 * 109.47352 * 59.99543 * 10 9 7 13 13 C 1.52994 * 109.47118 * 179.97438 * 10 9 7 14 14 C 1.52999 * 117.49768 * 248.74286 * 13 10 9 15 15 C 1.53005 * 117.49709 * 180.08273 * 13 10 9 16 16 C 1.46903 * 111.00194 * 236.04447 * 2 1 3 17 17 C 1.50693 * 109.46907 * 293.95485 * 16 2 1 18 18 O 1.21290 * 120.00443 * 359.97438 * 17 16 2 19 19 N 1.34784 * 119.99856 * 180.02562 * 17 16 2 20 20 C 1.37092 * 119.99888 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00369 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99634 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00358 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47356 * 60.00168 * 24 22 20 26 26 H 1.48505 * 109.46954 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47339 * 299.99995 * 24 22 20 28 28 H 1.09003 * 109.47310 * 60.00347 * 1 2 3 29 29 H 1.08998 * 109.47321 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47569 * 300.00315 * 1 2 3 31 31 H 1.08999 * 109.46882 * 306.03979 * 3 2 1 32 32 H 1.09005 * 109.47092 * 186.04221 * 3 2 1 33 33 H 1.09001 * 109.46980 * 59.99716 * 4 3 2 34 34 H 1.09005 * 109.46685 * 299.99809 * 4 3 2 35 35 H 1.08998 * 109.46921 * 269.99744 * 6 5 4 36 36 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 37 37 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 38 38 H 1.09004 * 109.46965 * 299.72211 * 9 7 5 39 39 H 1.08994 * 109.46990 * 59.72065 * 9 7 5 40 40 H 1.08994 * 109.47439 * 59.99953 * 11 10 9 41 41 H 1.09001 * 109.47432 * 180.02562 * 11 10 9 42 42 H 1.09008 * 109.46768 * 299.99629 * 11 10 9 43 43 H 1.08996 * 109.46527 * 60.00105 * 12 10 9 44 44 H 1.09001 * 109.46925 * 180.02562 * 12 10 9 45 45 H 1.09003 * 109.47167 * 300.00441 * 12 10 9 46 46 H 1.09000 * 115.55183 * 34.41950 * 13 10 9 47 47 H 1.09002 * 117.50063 * 0.02562 * 14 13 10 48 48 H 1.09003 * 117.49804 * 145.02570 * 14 13 10 49 49 H 1.08999 * 117.50068 * 214.97430 * 15 13 10 50 50 H 1.08996 * 117.49806 * 0.02562 * 15 13 10 51 51 H 1.09002 * 109.46958 * 53.95761 * 16 2 1 52 52 H 1.09001 * 109.46996 * 173.95313 * 16 2 1 53 53 H 0.97002 * 119.99496 * 359.97438 * 19 17 16 54 54 H 0.96997 * 120.00205 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 7 2.1559 3.4254 1.3180 6 6 3.5008 3.6942 1.8329 7 6 1.4011 4.4364 0.8441 8 8 0.2878 4.2137 0.4175 9 6 1.9430 5.8426 0.8381 10 6 0.8968 6.7899 0.2474 11 6 0.5726 6.3621 -1.1853 12 6 -0.3756 6.7372 1.0956 13 6 1.4468 8.2176 0.2419 14 6 0.8010 9.2270 1.1932 15 6 0.5431 9.3206 -0.3128 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9728 18 8 1.0054 -2.5833 -0.0029 19 7 2.0189 -3.1182 -1.9027 20 6 1.6923 -4.4412 -1.7530 21 1 1.1293 -4.7642 -0.8899 22 6 2.0857 -5.3666 -2.7120 23 7 2.7703 -4.9736 -3.7625 24 14 1.6413 -7.1695 -2.5078 25 1 0.1641 -7.3124 -2.4560 26 1 2.1730 -7.9437 -3.6580 27 1 2.2330 -7.6855 -1.2472 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5016 2.1492 34 1 0.5471 2.0845 1.4264 35 1 3.4449 3.9105 2.8998 36 1 4.1328 2.8210 1.6718 37 1 3.9253 4.5514 1.3102 38 1 2.1740 6.1474 1.8589 39 1 2.8494 5.8801 0.2339 40 1 0.1807 5.3451 -1.1810 41 1 -0.1724 7.0372 -1.6064 42 1 1.4791 6.3996 -1.7896 43 1 -0.1446 7.0420 2.1162 44 1 -1.1211 7.4118 0.6744 45 1 -0.7676 5.7201 1.0999 46 1 2.5183 8.3079 0.0640 47 1 -0.0154 8.8739 1.8232 48 1 1.4476 9.9818 1.6407 49 1 1.0202 10.1368 -0.8553 50 1 -0.4433 9.0291 -0.6735 51 1 1.5611 -0.3872 -2.0628 52 1 3.0797 -0.6611 -1.1756 53 1 2.5243 -2.8280 -2.6781 54 1 3.0453 -5.6197 -4.4317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715516708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -57.232563 kcal Electronic energy + Delta-G solvation = -30047.720683 eV Core-core repulsion = 26019.995297 eV Total energy + Delta-G solvation = -4027.725387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.45916 -40.39471 -39.39692 -38.05760 -36.47036 -35.81525 -34.48174 -33.28425 -31.46942 -29.39686 -28.73397 -28.26056 -27.62257 -26.80284 -25.42157 -24.11411 -23.02162 -22.36138 -21.01278 -20.13313 -19.83360 -19.20577 -18.15514 -17.87459 -17.28742 -16.79565 -16.71824 -16.52333 -16.44390 -16.03267 -15.66026 -15.57060 -15.15060 -14.99783 -14.68163 -14.52920 -14.16180 -14.13038 -13.94341 -13.76938 -13.45550 -13.37417 -13.18107 -13.00998 -12.96242 -12.72369 -12.62405 -12.54632 -12.47474 -12.41664 -12.21012 -12.12184 -11.94370 -11.82853 -11.80461 -11.63512 -11.45357 -11.08532 -10.71883 -10.40029 -10.32520 -10.00124 -9.61886 -9.28619 -8.45818 -5.94555 1.40129 1.41803 1.52801 1.68707 1.97702 2.05141 2.30041 2.84531 2.97297 3.20574 3.40360 3.57012 3.73593 3.90645 3.99163 4.05662 4.14002 4.22170 4.24196 4.29962 4.33326 4.35655 4.40433 4.47433 4.50362 4.58042 4.60172 4.62029 4.67684 4.72306 4.82326 4.82574 4.85122 4.88359 4.94669 5.00738 5.05822 5.13732 5.14078 5.16529 5.18689 5.33899 5.41331 5.43191 5.47806 5.54328 5.64950 5.83442 6.02789 6.13946 6.47900 6.61118 7.13307 7.28733 7.56452 8.12396 8.71389 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001749 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.528194 B =16001.476362 C =16195.733474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.528 5.528 3 C 0.052 3.948 4 C 0.125 3.875 5 N -0.616 5.616 6 C 0.069 3.931 7 C 0.504 3.496 8 O -0.566 6.566 9 C -0.120 4.120 10 C -0.013 4.013 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.142 4.142 14 C -0.181 4.181 15 C -0.184 4.184 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.018 0.982 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.060 0.940 52 H 0.114 0.886 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 29.826 8.417 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.253 5.253 3 C -0.077 4.077 4 C 0.001 3.999 5 N -0.349 5.349 6 C -0.073 4.073 7 C 0.294 3.706 8 O -0.446 6.446 9 C -0.160 4.160 10 C -0.014 4.014 11 C -0.204 4.204 12 C -0.207 4.207 13 C -0.160 4.160 14 C -0.218 4.218 15 C -0.221 4.221 16 C -0.073 4.073 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.136 0.864 47 H 0.114 0.886 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.102 0.898 51 H 0.078 0.922 52 H 0.132 0.868 53 H 0.229 0.771 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.508 29.136 9.118 30.730 hybrid contribution -0.456 -0.677 -1.347 1.575 sum 3.052 28.459 7.771 29.658 Atomic orbital electron populations 1.22386 0.87194 1.02034 1.00094 1.61502 1.08524 1.13021 1.42254 1.22431 1.00771 0.86859 0.97630 1.21235 0.99794 0.81592 0.97263 1.48016 1.17909 1.06540 1.62442 1.22116 0.81135 1.03821 1.00196 1.21331 0.84902 0.88160 0.76171 1.90604 1.21534 1.85084 1.47380 1.21790 1.00093 0.89142 1.04929 1.19727 0.94253 0.92211 0.95201 1.22005 1.01113 1.01835 0.95475 1.22138 0.97120 1.02333 0.99159 1.22323 0.98833 0.89506 1.05369 1.23199 1.03793 1.02013 0.92780 1.22966 1.00980 1.01165 0.96994 1.21740 1.02190 0.90359 0.92989 1.20688 0.83797 0.88594 0.83983 1.90460 1.45088 1.81369 1.32953 1.41923 1.50033 1.07059 1.22120 1.19636 1.34482 0.84011 1.08175 0.90242 1.26041 0.96245 1.04355 0.94641 1.69666 1.38061 1.37257 1.11182 0.84983 0.78554 0.76714 0.78041 1.19843 1.19483 1.19612 0.96357 0.92181 0.90666 0.95790 0.89161 0.88870 0.91774 0.91011 0.90183 0.88710 0.86778 0.86766 0.92518 0.93318 0.92782 0.92160 0.93350 0.92427 0.86446 0.88592 0.87910 0.88131 0.89793 0.92181 0.86832 0.77064 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.96 127.69 1.14 2.26 16 2 N -0.53 -18.00 4.50 -927.07 -4.17 -22.17 16 3 C 0.05 1.35 5.28 86.30 0.46 1.80 16 4 C 0.12 2.87 5.33 86.38 0.46 3.33 16 5 N -0.62 -10.75 2.87 -846.74 -2.43 -13.19 16 6 C 0.07 0.61 10.25 127.77 1.31 1.92 16 7 C 0.50 9.99 7.09 87.66 0.62 10.61 16 8 O -0.57 -15.88 10.93 -3.04 -0.03 -15.92 16 9 C -0.12 -1.45 3.30 29.85 0.10 -1.35 16 10 C -0.01 -0.20 0.62 -52.18 -0.03 -0.23 16 11 C -0.15 -2.76 8.02 71.98 0.58 -2.19 16 12 C -0.15 -2.66 6.77 71.98 0.49 -2.18 16 13 C -0.14 -1.56 5.15 -10.79 -0.06 -1.62 16 14 C -0.18 -1.86 9.57 30.62 0.29 -1.57 16 15 C -0.18 -2.13 9.39 30.62 0.29 -1.84 16 16 C 0.06 2.12 5.45 85.55 0.47 2.59 16 17 C 0.44 21.54 7.47 87.65 0.66 22.20 16 18 O -0.61 -34.32 13.91 -3.06 -0.04 -34.36 16 19 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 20 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 24 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.06 2.59 5.82 -2.39 -0.01 2.58 16 30 H 0.07 2.44 6.47 -2.39 -0.02 2.42 16 31 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.09 2.00 7.93 -2.38 -0.02 1.98 16 33 H 0.09 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.06 1.77 5.83 -2.38 -0.01 1.76 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.68 8.07 -2.39 -0.02 0.66 16 37 H 0.09 0.40 6.43 -2.39 -0.02 0.39 16 38 H 0.11 0.92 8.11 -2.38 -0.02 0.90 16 39 H 0.11 0.91 7.40 -2.39 -0.02 0.89 16 40 H 0.06 1.42 5.51 -2.39 -0.01 1.41 16 41 H 0.05 0.90 7.29 -2.39 -0.02 0.88 16 42 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 0.90 6.97 -2.39 -0.02 0.89 16 44 H 0.05 0.85 7.07 -2.39 -0.02 0.83 16 45 H 0.06 1.38 5.51 -2.39 -0.01 1.37 16 46 H 0.12 0.96 8.11 -2.39 -0.02 0.94 16 47 H 0.10 1.09 5.85 -2.39 -0.01 1.07 16 48 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.14 7.07 -2.39 -0.02 1.12 16 51 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 52 H 0.11 3.52 7.93 -2.39 -0.02 3.51 16 53 H 0.40 19.64 7.90 -92.71 -0.73 18.90 16 54 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -72.19 415.02 2.22 -69.98 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.16 Total: 36.61 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 8.05 Total: 15.13 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -7.94 Total: -116.80 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.08 Total: -50.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.19 2.22 -69.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.744 kcal (2) G-P(sol) polarization free energy of solvation -72.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds