Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47318 * 180.02562 * 4 3 2 6 6 C 1.34782 * 120.00087 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99985 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00026 * 179.97438 * 6 5 4 9 9 H 1.08995 * 109.49519 * 59.93588 * 8 6 5 10 10 C 1.53039 * 109.52295 * 299.85412 * 8 6 5 11 11 C 1.53041 * 109.53502 * 178.66412 * 10 8 6 12 12 C 1.52756 * 109.37897 * 61.24603 * 11 10 8 13 13 N 1.46928 * 109.00980 * 305.57993 * 12 11 10 14 14 C 1.34770 * 120.63158 * 233.58689 * 13 12 11 15 15 O 1.21284 * 119.99611 * 179.72212 * 14 13 12 16 16 C 1.50699 * 120.00651 * 359.72291 * 14 13 12 17 17 H 1.09000 * 109.46438 * 319.99712 * 16 14 13 18 18 N 1.46897 * 109.47303 * 200.00095 * 16 14 13 19 19 C 1.52994 * 109.47013 * 79.99298 * 16 14 13 20 20 C 1.52996 * 109.47119 * 185.00236 * 19 16 14 21 21 C 1.50702 * 109.47159 * 180.02562 * 20 19 16 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72211 * 21 20 19 24 24 N 1.31514 * 119.99985 * 180.27663 * 23 21 20 25 25 Si 1.86800 * 119.99777 * 0.28166 * 23 21 20 26 26 H 1.48498 * 109.47109 * 89.99834 * 25 23 21 27 27 H 1.48507 * 109.46754 * 209.99574 * 25 23 21 28 28 H 1.48498 * 109.47278 * 329.99405 * 25 23 21 29 29 C 1.46928 * 118.73177 * 53.31658 * 13 12 11 30 30 H 1.08998 * 109.47094 * 300.00131 * 1 2 3 31 31 H 1.09007 * 109.46833 * 60.00262 * 1 2 3 32 32 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47160 * 239.99466 * 2 1 3 34 34 H 1.09007 * 109.46833 * 119.99738 * 2 1 3 35 35 H 1.08998 * 109.47087 * 59.99865 * 3 2 1 36 36 H 1.08998 * 109.47157 * 299.99737 * 3 2 1 37 37 H 1.08993 * 109.47461 * 59.99633 * 4 3 2 38 38 H 1.09007 * 109.46833 * 299.99738 * 4 3 2 39 39 H 0.97003 * 120.00439 * 359.97438 * 5 4 3 40 40 H 1.09001 * 109.46393 * 298.69159 * 10 8 6 41 41 H 1.09001 * 109.45901 * 58.66456 * 10 8 6 42 42 H 1.09001 * 109.49394 * 181.31755 * 11 10 8 43 43 H 1.08993 * 109.49844 * 301.38060 * 11 10 8 44 44 H 1.09009 * 109.50920 * 185.70552 * 12 11 10 45 45 H 1.09001 * 109.43638 * 65.42354 * 12 11 10 46 46 H 1.00893 * 110.99633 * 176.04555 * 18 16 14 47 47 H 1.00906 * 110.99511 * 299.99380 * 18 16 14 48 48 H 1.09004 * 109.46806 * 65.00499 * 19 16 14 49 49 H 1.09000 * 109.47828 * 305.00803 * 19 16 14 50 50 H 1.09004 * 109.47066 * 60.00422 * 20 19 16 51 51 H 1.08994 * 109.47405 * 300.00252 * 20 19 16 52 52 H 0.96996 * 119.99730 * 180.02562 * 24 23 21 53 53 H 1.08996 * 109.59082 * 66.42910 * 29 13 12 54 54 H 1.09004 * 109.58383 * 186.85349 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0698 0.0001 7 8 6.1716 2.1480 -0.0008 8 6 5.8859 4.4907 0.0001 9 1 5.5218 5.0052 0.8893 10 6 5.3795 5.2123 -1.2509 11 6 5.8619 6.6646 -1.2345 12 6 7.3892 6.6916 -1.2452 13 7 7.8901 5.8765 -0.1301 14 6 8.7619 6.3914 0.7593 15 8 9.1641 5.7098 1.6784 16 6 9.2370 7.8139 0.6121 17 1 9.4106 8.0316 -0.4417 18 7 10.4879 7.9925 1.3614 19 6 8.1730 8.7663 1.1612 20 6 8.5989 10.2123 0.8992 21 6 7.5512 11.1505 1.4406 22 1 6.6699 10.7550 1.9237 23 6 7.7206 12.5140 1.3249 24 7 6.8089 13.3328 1.8022 25 14 9.2452 13.1980 0.4899 26 1 8.9844 13.3573 -0.9633 27 1 9.5823 14.5185 1.0800 28 1 10.3809 12.2623 0.6894 29 6 7.4178 4.4913 0.0002 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8907 38 1 3.9337 0.9285 0.8892 39 1 3.4281 3.5609 0.0003 40 1 5.7642 4.7118 -2.1395 41 1 4.2898 5.1920 -1.2657 42 1 5.4814 7.1842 -2.1139 43 1 5.4975 7.1588 -0.3340 44 1 7.7359 7.7188 -1.1315 45 1 7.7525 6.2834 -2.1884 46 1 10.8610 8.9200 1.2262 47 1 10.3530 7.7963 2.3420 48 1 8.0632 8.6086 2.2341 49 1 7.2214 8.5725 0.6662 50 1 8.7087 10.3700 -0.1738 51 1 9.5504 10.4062 1.3942 52 1 6.9280 14.2920 1.7204 53 1 7.7835 3.9000 -0.8392 54 1 7.7833 4.0671 0.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424115510.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -129.916888 kcal Electronic energy + Delta-G solvation = -30166.442659 eV Core-core repulsion = 26135.565444 eV Total energy + Delta-G solvation = -4030.877216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76115 -40.73774 -38.35785 -37.20644 -37.13867 -34.87871 -34.79457 -33.90206 -32.35107 -32.07577 -29.93705 -28.62308 -26.74781 -25.81596 -24.72725 -23.72714 -22.53612 -22.25080 -21.96114 -20.93581 -19.91758 -19.10245 -18.60999 -17.91203 -17.28777 -16.95462 -16.93851 -16.26806 -16.17280 -16.14432 -15.80588 -15.58430 -15.28741 -14.99182 -14.88926 -14.71577 -14.59564 -14.49249 -14.33454 -14.00783 -13.81082 -13.63598 -13.49897 -13.28075 -13.04605 -12.74603 -12.53475 -12.47695 -12.14893 -12.10836 -12.04437 -11.96692 -11.96314 -11.84669 -11.69026 -11.63704 -11.51677 -11.38070 -10.91004 -10.74630 -10.67228 -10.15422 -9.75329 -9.63607 -8.27345 -6.32277 1.39636 1.42562 1.52228 1.52693 1.53824 1.77268 2.26010 2.38161 3.08454 3.38457 3.55061 3.69893 3.74249 3.79545 3.85974 4.00826 4.03661 4.05007 4.09970 4.15785 4.21076 4.22581 4.43015 4.50392 4.57475 4.58004 4.63052 4.68390 4.69032 4.77935 4.82573 4.88718 4.91694 4.93351 4.96361 5.04551 5.06538 5.07810 5.25084 5.33273 5.35038 5.39667 5.42266 5.46474 5.46984 5.48631 5.64663 6.03486 6.27550 6.34199 6.46272 6.47913 6.75824 7.11249 7.17020 7.32410 8.89101 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.002161 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.033596 B =12954.309369 C =14065.912344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.122 4.122 4 C 0.117 3.883 5 N -0.716 5.716 6 C 0.523 3.477 7 O -0.582 6.582 8 C -0.115 4.115 9 H 0.102 0.898 10 C -0.100 4.100 11 C -0.132 4.132 12 C 0.090 3.910 13 N -0.607 5.607 14 C 0.523 3.477 15 O -0.576 6.576 16 C 0.081 3.919 17 H 0.121 0.879 18 N -0.833 5.833 19 C -0.117 4.117 20 C -0.005 4.005 21 C -0.530 4.530 22 H 0.028 0.972 23 C 0.004 3.996 24 N -0.951 5.951 25 Si 0.950 3.050 26 H -0.263 1.263 27 H -0.292 1.292 28 H -0.241 1.241 29 C 0.136 3.864 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.416 0.584 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.355 0.645 47 H 0.344 0.656 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.033 0.967 51 H 0.022 0.978 52 H 0.265 0.735 53 H 0.076 0.924 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.237 -21.765 -11.319 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.007 4.007 5 N -0.368 5.368 6 C 0.310 3.690 7 O -0.462 6.462 8 C -0.137 4.137 9 H 0.121 0.879 10 C -0.138 4.138 11 C -0.170 4.170 12 C -0.031 4.031 13 N -0.340 5.340 14 C 0.311 3.689 15 O -0.455 6.455 16 C -0.034 4.034 17 H 0.138 0.862 18 N -0.364 5.364 19 C -0.157 4.157 20 C -0.043 4.043 21 C -0.568 4.568 22 H 0.047 0.953 23 C -0.193 4.193 24 N -0.592 5.592 25 Si 0.773 3.227 26 H -0.188 1.188 27 H -0.218 1.218 28 H -0.164 1.164 29 C 0.013 3.987 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.171 0.829 47 H 0.157 0.843 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.051 0.949 51 H 0.040 0.960 52 H 0.074 0.926 53 H 0.094 0.906 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.225 -23.209 -11.286 27.406 hybrid contribution -0.427 1.638 0.906 1.920 sum -9.652 -21.571 -10.380 25.811 Atomic orbital electron populations 1.21759 0.94923 1.02082 1.02171 1.21443 0.96564 0.95700 1.02416 1.21772 0.91948 0.98513 1.03755 1.21429 0.95392 0.82331 1.01501 1.45926 1.06443 1.09885 1.74532 1.20639 0.82720 0.90856 0.74810 1.90708 1.56565 1.47609 1.51287 1.21632 0.96137 0.92924 1.03055 0.87947 1.21531 1.02343 0.94889 0.95057 1.21861 0.94082 0.96699 1.04382 1.22105 0.95685 0.96296 0.89044 1.48117 1.44213 1.13324 1.28306 1.20925 0.77861 0.89227 0.80852 1.90626 1.58154 1.62586 1.34143 1.21472 0.90651 0.89993 1.01239 0.86164 1.58750 1.26922 1.34906 1.15863 1.22046 0.98591 0.95162 0.99916 1.19501 0.95807 0.91924 0.97063 1.21391 1.06123 0.91529 1.37743 0.95319 1.26026 0.99828 0.97497 0.95901 1.70073 1.37205 1.03631 1.48291 0.85667 0.80205 0.77772 0.79059 1.18759 1.21836 1.16372 1.21153 0.92622 0.82093 1.02863 0.92577 0.92239 0.92404 0.91616 0.92065 0.90644 0.89968 0.92111 0.92946 0.74673 0.90285 0.88423 0.87333 0.92010 0.88842 0.88903 0.82935 0.84282 0.94256 0.91048 0.94881 0.95968 0.92602 0.90609 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.81 16 3 C -0.12 -0.95 5.33 30.59 0.16 -0.79 16 4 C 0.12 1.56 5.67 86.38 0.49 2.06 16 5 N -0.72 -9.91 5.44 -463.06 -2.52 -12.43 16 6 C 0.52 11.01 7.16 87.66 0.63 11.64 16 7 O -0.58 -17.49 15.92 -3.03 -0.05 -17.53 16 8 C -0.12 -2.20 2.67 -11.46 -0.03 -2.23 16 9 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 10 C -0.10 -1.27 5.08 30.62 0.16 -1.11 16 11 C -0.13 -1.96 6.06 30.53 0.19 -1.78 16 12 C 0.09 1.68 5.73 86.22 0.49 2.18 16 13 N -0.61 -15.68 2.98 -819.73 -2.44 -18.12 16 14 C 0.52 17.22 6.95 87.66 0.61 17.83 16 15 O -0.58 -23.45 15.66 -3.04 -0.05 -23.50 16 16 C 0.08 2.51 2.34 44.17 0.10 2.61 16 17 H 0.12 3.17 6.81 -2.39 -0.02 3.16 16 18 N -0.83 -26.36 8.94 -171.81 -1.54 -27.89 16 19 C -0.12 -4.20 4.45 30.59 0.14 -4.06 16 20 C -0.01 -0.23 3.81 29.85 0.11 -0.11 16 21 C -0.53 -28.73 9.66 25.60 0.25 -28.48 16 22 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 23 C 0.00 0.24 5.47 84.66 0.46 0.70 16 24 N -0.95 -57.78 13.96 21.45 0.30 -57.48 16 25 Si 0.95 41.53 27.47 68.60 1.88 43.42 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 28 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 29 C 0.14 3.51 5.07 86.36 0.44 3.95 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 39 H 0.42 3.31 7.89 -92.71 -0.73 2.57 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.74 7.54 -2.39 -0.02 0.73 16 42 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.86 4.82 -2.38 -0.01 1.85 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.36 10.45 7.55 -89.70 -0.68 9.78 16 47 H 0.34 11.51 8.58 -89.69 -0.77 10.74 16 48 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 49 H 0.07 2.43 6.95 -2.39 -0.02 2.41 16 50 H 0.03 1.27 7.58 -2.38 -0.02 1.26 16 51 H 0.02 0.91 5.92 -2.39 -0.01 0.89 16 52 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 53 H 0.08 1.93 7.96 -2.39 -0.02 1.91 16 54 H 0.06 2.10 7.01 -2.38 -0.02 2.08 16 Total: -1.00 -76.58 419.45 -0.65 -77.22 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -1.33 Total: 35.09 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.09 Total: 1.23 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -6.20 Total: -115.92 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.10 Total: -41.04 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.88 Total: 43.42 kcal Total: -76.58 -0.65 -77.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115510.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.693 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds