Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46858 * 2 1 4 4 C 1.52996 * 109.46874 * 119.99970 * 2 1 3 5 5 N 1.46892 * 109.47143 * 240.00214 * 2 1 3 6 6 C 1.46199 * 111.00113 * 184.59994 * 5 2 1 7 7 C 1.51277 * 109.10196 * 144.77067 * 6 5 2 8 8 C 1.53796 * 109.62876 * 92.40763 * 7 6 5 9 9 N 1.47612 * 111.30641 * 319.95860 * 8 7 6 10 10 C 1.34776 * 118.75033 * 138.29100 * 9 8 7 11 11 O 1.21352 * 119.99583 * 358.07017 * 10 9 8 12 12 C 1.49453 * 120.00430 * 178.06750 * 10 9 8 13 13 O 1.21352 * 119.99721 * 6.20325 * 12 10 9 14 14 N 1.34771 * 120.00063 * 186.21219 * 12 10 9 15 15 C 1.46498 * 119.99794 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47355 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47460 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47449 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99470 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00381 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47279 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47274 * 119.99950 * 22 20 18 25 25 H 1.48507 * 109.47274 * 239.99890 * 22 20 18 26 26 C 1.44880 * 122.50381 * 318.32002 * 9 8 7 27 27 C 1.41444 * 110.99998 * 53.56105 * 5 2 1 28 28 H 1.08997 * 109.47139 * 52.51267 * 1 2 3 29 29 H 1.09003 * 109.46842 * 292.51409 * 1 2 3 30 30 H 1.09000 * 109.46789 * 172.51828 * 1 2 3 31 31 H 1.09002 * 109.47038 * 60.00205 * 3 2 1 32 32 H 1.09001 * 109.46739 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47608 * 299.99918 * 3 2 1 34 34 H 1.08999 * 109.47080 * 70.50291 * 4 2 1 35 35 H 1.09009 * 109.46591 * 190.49514 * 4 2 1 36 36 H 1.09002 * 109.47734 * 310.49661 * 4 2 1 37 37 H 1.09003 * 109.53286 * 264.65540 * 6 5 2 38 38 H 1.09001 * 109.53299 * 24.88030 * 6 5 2 39 39 H 1.09003 * 109.44143 * 332.36274 * 7 6 5 40 40 H 1.08998 * 109.41732 * 212.44376 * 7 6 5 41 41 H 1.09002 * 109.11050 * 199.48965 * 8 7 6 42 42 H 1.09000 * 109.06520 * 80.39773 * 8 7 6 43 43 H 0.97004 * 120.00126 * 359.97438 * 14 12 10 44 44 H 1.09006 * 109.46998 * 299.99181 * 15 14 12 45 45 H 1.09004 * 109.47679 * 59.99199 * 15 14 12 46 46 H 1.09003 * 109.47128 * 300.00221 * 16 15 14 47 47 H 1.09004 * 109.46968 * 59.99269 * 16 15 14 48 48 H 1.09006 * 109.47104 * 299.99815 * 17 16 15 49 49 H 1.08994 * 109.47515 * 59.99844 * 17 16 15 50 50 H 0.96991 * 120.00302 * 180.02562 * 21 20 18 51 51 H 1.08994 * 109.43666 * 329.65663 * 26 9 8 52 52 H 1.09001 * 109.40054 * 209.76697 * 26 9 8 53 53 H 1.08992 * 109.38967 * 311.84358 * 27 5 2 54 54 H 1.09001 * 109.38256 * 71.63579 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0197 -0.6924 -1.1994 6 6 3.4770 -0.8075 -1.1797 7 6 3.8783 -2.1236 -1.8085 8 6 4.1419 -1.9197 -3.3099 9 7 3.1522 -1.0027 -3.9086 10 6 3.5770 -0.0772 -4.7915 11 8 4.7583 0.0138 -5.0540 12 6 2.5932 0.8371 -5.4473 13 8 1.4296 0.8235 -5.1033 14 7 2.9985 1.6765 -6.4207 15 6 2.0343 2.5731 -7.0630 16 6 2.7476 3.4134 -8.1241 17 6 1.7405 4.3493 -8.7954 18 6 2.4430 5.1766 -9.8410 19 1 3.5021 5.0479 -10.0095 20 6 1.7341 6.0983 -10.5817 21 7 0.4446 6.2553 -10.3762 22 14 2.6050 7.1242 -11.8772 23 1 4.0442 6.7596 -11.9122 24 1 1.9957 6.8645 -13.2063 25 1 2.4678 8.5646 -11.5427 26 6 1.7416 -1.0592 -3.5829 27 6 1.4492 -0.1420 -2.3708 28 1 -0.3633 0.6254 -0.8154 29 1 -0.3633 0.3935 0.9494 30 1 -0.3633 -1.0189 -0.1338 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.8377 -1.7886 1.1605 35 1 3.1139 -0.5619 1.3478 36 1 1.5319 -0.3270 2.1293 37 1 3.9152 0.0151 -1.7451 38 1 3.8315 -0.7726 -0.1496 39 1 3.0751 -2.8486 -1.6763 40 1 4.7839 -2.4936 -1.3280 41 1 4.0872 -2.8836 -3.8160 42 1 5.1404 -1.5033 -3.4428 43 1 3.9287 1.6875 -6.6954 44 1 1.2479 1.9834 -7.5344 45 1 1.5949 3.2314 -6.3136 46 1 3.5338 4.0031 -7.6525 47 1 3.1872 2.7553 -8.8736 48 1 0.9547 3.7593 -9.2672 49 1 1.3006 5.0074 -8.0462 50 1 -0.0542 6.9035 -10.8975 51 1 1.4672 -2.0847 -3.3362 52 1 1.1583 -0.7239 -4.4404 53 1 0.3713 -0.0492 -2.2391 54 1 1.8776 0.8435 -2.5532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561337071.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -74.167530 kcal Electronic energy + Delta-G solvation = -30948.476605 eV Core-core repulsion = 26920.016863 eV Total energy + Delta-G solvation = -4028.459742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26817 -40.70104 -39.61554 -37.70385 -36.88249 -35.26538 -34.08625 -33.37846 -33.05348 -29.54718 -28.88692 -28.29755 -28.13741 -27.00522 -25.76853 -24.37666 -23.02683 -22.40345 -21.83291 -20.67825 -19.78189 -18.78342 -18.51661 -18.16549 -17.54939 -17.08832 -16.93282 -16.51643 -16.30904 -16.27821 -16.19349 -15.43038 -15.25177 -15.00845 -14.93332 -14.46351 -14.31577 -14.24742 -14.04634 -13.79799 -13.66967 -13.51046 -13.14247 -13.02527 -12.82737 -12.79440 -12.72730 -12.66753 -12.58133 -12.39734 -12.27871 -12.10948 -11.87402 -11.85838 -11.71908 -11.62796 -11.54607 -11.28543 -11.21183 -10.56779 -10.39679 -10.27433 -9.79391 -9.12069 -8.20940 -6.31725 0.27518 1.24805 1.40492 1.41124 1.54071 2.04047 2.38639 2.45124 2.88945 3.12968 3.24011 3.78465 3.84698 3.96173 4.05278 4.06391 4.13272 4.16161 4.21159 4.25297 4.28159 4.50264 4.52686 4.57817 4.59163 4.66165 4.74051 4.76147 4.80453 4.89419 4.89679 4.90559 4.99961 5.00144 5.02559 5.03447 5.10726 5.13091 5.20698 5.27222 5.31166 5.40752 5.41113 5.46225 5.50404 5.68979 5.83010 5.87151 6.17631 6.23011 6.27524 6.45946 6.64856 6.85191 6.87778 7.37657 8.91155 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.002098 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.932206 B =13342.329899 C =14212.498019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.104 3.896 3 C -0.175 4.175 4 C -0.133 4.133 5 N -0.545 5.545 6 C 0.064 3.936 7 C -0.117 4.117 8 C 0.103 3.897 9 N -0.566 5.566 10 C 0.500 3.500 11 O -0.548 6.548 12 C 0.498 3.502 13 O -0.527 6.527 14 N -0.688 5.688 15 C 0.130 3.870 16 C -0.106 4.106 17 C 0.026 3.974 18 C -0.541 4.541 19 H 0.063 0.937 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.085 3.915 27 C 0.072 3.928 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.011 0.989 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.417 0.583 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.066 0.934 48 H -0.002 1.002 49 H -0.004 1.004 50 H 0.264 0.736 51 H 0.098 0.902 52 H 0.117 0.883 53 H 0.094 0.906 54 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -20.331 24.868 32.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 C -0.234 4.234 4 C -0.191 4.191 5 N -0.269 5.269 6 C -0.063 4.063 7 C -0.156 4.156 8 C -0.018 4.018 9 N -0.298 5.298 10 C 0.282 3.718 11 O -0.427 6.427 12 C 0.280 3.720 13 O -0.405 6.405 14 N -0.340 5.340 15 C 0.007 3.993 16 C -0.144 4.144 17 C -0.012 4.012 18 C -0.579 4.579 19 H 0.081 0.919 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.037 4.037 27 C -0.058 4.058 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.253 0.747 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.016 0.984 49 H 0.014 0.986 50 H 0.072 0.928 51 H 0.116 0.884 52 H 0.135 0.865 53 H 0.112 0.888 54 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 4.130 -20.663 24.928 32.641 hybrid contribution 0.718 1.922 -1.184 2.369 sum 4.848 -18.741 23.744 30.635 Atomic orbital electron populations 1.21940 0.93265 1.02587 1.01957 1.21137 0.95722 0.90985 0.90614 1.22462 1.00816 0.98326 1.01819 1.21897 1.00769 1.01092 0.95297 1.58786 1.09638 1.56348 1.02172 1.21660 0.86581 0.96626 1.01418 1.21829 1.03682 0.97921 0.92136 1.22219 0.91608 0.92868 0.95103 1.47877 1.10322 1.31757 1.39861 1.20180 0.87959 0.82219 0.81400 1.90726 1.17658 1.70833 1.63440 1.20319 0.88437 0.82192 0.81098 1.90589 1.19009 1.67544 1.63361 1.45931 1.14377 1.37484 1.36174 1.21456 0.91363 0.91428 0.95051 1.21639 0.98865 0.97454 0.96457 1.18926 0.94236 0.93590 0.94449 1.21697 0.95782 1.20725 1.19719 0.91882 1.25979 0.95598 0.98603 0.99791 1.70097 1.08521 1.36377 1.42295 0.85396 0.79033 0.78169 0.78421 1.18525 1.20452 1.20520 1.22635 0.79464 1.01830 0.99773 1.21544 1.00485 0.94312 0.89487 0.93507 0.91112 0.91239 0.91078 0.93310 0.94532 0.91247 0.92404 0.91275 0.97101 0.88959 0.89236 0.87936 0.89628 0.90347 0.74651 0.91436 0.91903 0.91754 0.91497 0.98403 0.98578 0.92763 0.88360 0.86542 0.88826 0.98325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.75 71.98 0.56 -1.29 16 2 C 0.10 1.46 0.69 3.53 0.00 1.46 16 3 C -0.18 -2.91 7.99 71.98 0.58 -2.34 16 4 C -0.13 -1.34 7.99 71.98 0.58 -0.77 16 5 N -0.55 -8.62 3.68 -861.90 -3.17 -11.79 16 6 C 0.06 0.97 3.91 85.87 0.34 1.31 16 7 C -0.12 -1.34 5.78 30.30 0.18 -1.17 16 8 C 0.10 1.65 6.15 86.43 0.53 2.18 16 9 N -0.57 -12.16 2.18 -819.47 -1.79 -13.95 16 10 C 0.50 13.69 7.70 87.27 0.67 14.36 16 11 O -0.55 -16.93 15.78 -3.25 -0.05 -16.98 16 12 C 0.50 14.85 7.74 87.27 0.68 15.52 16 13 O -0.53 -16.73 12.31 -3.25 -0.04 -16.77 16 14 N -0.69 -20.60 5.55 -464.41 -2.58 -23.18 16 15 C 0.13 4.44 5.67 86.38 0.49 4.93 16 16 C -0.11 -4.13 5.27 30.59 0.16 -3.97 16 17 C 0.03 1.32 4.97 29.85 0.15 1.47 16 18 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 20 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 21 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 22 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.09 1.70 5.10 87.29 0.44 2.14 16 27 C 0.07 1.44 4.13 87.91 0.36 1.80 16 28 H 0.05 0.73 6.55 -2.39 -0.02 0.72 16 29 H 0.07 0.77 8.07 -2.39 -0.02 0.75 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.84 7.29 -2.39 -0.02 0.82 16 33 H 0.04 0.76 6.82 -2.39 -0.02 0.74 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.56 6.29 -2.38 -0.01 0.54 16 36 H 0.07 0.58 8.05 -2.39 -0.02 0.56 16 37 H 0.01 0.23 7.32 -2.39 -0.02 0.21 16 38 H 0.09 1.14 5.26 -2.39 -0.01 1.13 16 39 H 0.09 0.95 7.98 -2.39 -0.02 0.93 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.49 6.97 -2.39 -0.02 1.47 16 43 H 0.42 11.51 7.96 -92.71 -0.74 10.77 16 44 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 48 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 49 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 51 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 52 H 0.12 2.80 4.81 -33.10 -0.16 2.64 16 53 H 0.09 1.84 5.58 -2.39 -0.01 1.83 16 54 H 0.00 -0.04 6.68 -2.39 -0.02 -0.05 16 Total: -1.00 -66.56 408.43 1.08 -65.47 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.00 Total: 21.40 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.40 Total: 5.95 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -7.25 Total: -105.14 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.09 Total: -33.75 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.56 1.08 -65.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561337071.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.694 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds