Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47302 * 2 1 4 4 C 1.53003 * 109.47426 * 239.99760 * 2 1 3 5 5 N 1.46501 * 109.46830 * 120.00049 * 2 1 3 6 6 C 1.34770 * 120.00501 * 60.00023 * 5 2 1 7 7 O 1.21292 * 119.99732 * 0.02562 * 6 5 2 8 8 C 1.50692 * 120.00474 * 179.97438 * 6 5 2 9 9 C 1.53003 * 109.47518 * 180.02562 * 8 6 5 10 10 N 1.46501 * 109.47544 * 180.02562 * 9 8 6 11 11 C 1.34767 * 119.99933 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00368 * 355.01189 * 11 10 9 13 13 N 1.34781 * 119.99998 * 175.01697 * 11 10 9 14 14 C 1.46932 * 120.62666 * 4.93532 * 13 11 10 15 15 C 1.53628 * 108.53789 * 126.37263 * 14 13 11 16 16 C 1.53037 * 109.24098 * 54.85809 * 15 14 13 17 17 C 1.53003 * 109.45956 * 178.48869 * 16 15 14 18 18 C 1.50704 * 109.47016 * 295.07064 * 17 16 15 19 19 H 1.08004 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00176 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47267 * 89.99597 * 22 20 18 24 24 H 1.48498 * 109.47296 * 210.00124 * 22 20 18 25 25 H 1.48502 * 109.46923 * 329.99902 * 22 20 18 26 26 C 1.53040 * 109.53731 * 298.50641 * 16 15 14 27 27 C 1.46925 * 120.63187 * 185.22227 * 13 11 10 28 28 H 1.08999 * 109.47133 * 300.00011 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00423 * 1 2 3 30 30 H 1.08996 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47295 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46966 * 299.99959 * 3 2 1 33 33 H 1.08999 * 109.47035 * 59.99929 * 3 2 1 34 34 H 1.08997 * 109.46816 * 300.00238 * 4 2 1 35 35 H 1.08998 * 109.46885 * 60.00014 * 4 2 1 36 36 H 1.08996 * 109.47285 * 180.02562 * 4 2 1 37 37 H 0.96998 * 119.99624 * 239.99867 * 5 2 1 38 38 H 1.08999 * 109.47179 * 59.99918 * 8 6 5 39 39 H 1.09004 * 109.47346 * 300.00095 * 8 6 5 40 40 H 1.09004 * 109.46820 * 300.00333 * 9 8 6 41 41 H 1.08999 * 109.47031 * 59.99743 * 9 8 6 42 42 H 0.96998 * 119.99624 * 359.97438 * 10 9 8 43 43 H 1.08997 * 109.58552 * 246.20454 * 14 13 11 44 44 H 1.09000 * 109.58974 * 6.63269 * 14 13 11 45 45 H 1.08996 * 109.63697 * 294.86278 * 15 14 13 46 46 H 1.09008 * 109.45415 * 174.73865 * 15 14 13 47 47 H 1.08995 * 109.45115 * 58.52425 * 16 15 14 48 48 H 1.08995 * 109.47269 * 55.06397 * 17 16 15 49 49 H 1.08995 * 109.47323 * 175.07019 * 17 16 15 50 50 H 0.97005 * 119.99847 * 180.02562 * 21 20 18 51 51 H 1.08996 * 109.49815 * 301.41419 * 26 16 15 52 52 H 1.09005 * 109.51942 * 181.33575 * 26 16 15 53 53 H 1.08995 * 109.58589 * 353.36665 * 27 13 11 54 54 H 1.08998 * 109.58412 * 113.65312 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4095 7 8 0.9958 -2.5705 0.6109 8 6 2.1954 -2.6915 2.6397 9 6 1.6859 -4.1341 2.6395 10 7 2.1741 -4.8248 3.8357 11 6 1.8493 -6.1153 4.0484 12 8 1.0783 -6.6800 3.2968 13 7 2.3789 -6.7799 5.0945 14 6 3.2259 -6.0835 6.0725 15 6 2.6585 -6.3361 7.4777 16 6 2.5401 -7.8440 7.7102 17 6 2.0108 -8.1020 9.1223 18 6 3.0192 -7.6191 10.1328 19 1 3.9452 -7.1732 9.8010 20 6 2.7600 -7.7475 11.4809 21 7 1.6327 -8.2909 11.8850 22 14 4.0103 -7.1495 12.7335 23 1 3.7347 -5.7294 13.0688 24 1 3.9134 -7.9764 13.9631 25 1 5.3767 -7.2675 12.1640 26 6 1.5750 -8.4456 6.6861 27 6 2.1255 -8.2158 5.2751 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 2.5759 -0.2192 1.8347 38 1 1.8325 -2.1777 3.5298 39 1 3.2855 -2.6916 2.6393 40 1 0.5958 -4.1344 2.6396 41 1 2.0492 -4.6476 1.7493 42 1 2.7318 -4.3533 4.4741 43 1 4.2445 -6.4669 6.0124 44 1 3.2230 -5.0139 5.8626 45 1 1.6739 -5.8764 7.5632 46 1 3.3275 -5.9045 8.2223 47 1 3.5210 -8.3064 7.6000 48 1 1.0717 -7.5666 9.2618 49 1 1.8434 -9.1705 9.2581 50 1 1.4502 -8.3809 12.8335 51 1 0.6006 -7.9660 6.7791 52 1 1.4725 -9.5157 6.8669 53 1 1.3961 -8.5535 4.5389 54 1 3.0557 -8.7697 5.1488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564893305.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -111.689558 kcal Electronic energy + Delta-G solvation = -29646.531227 eV Core-core repulsion = 25616.444408 eV Total energy + Delta-G solvation = -4030.086819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52227 -41.06770 -38.89648 -37.65476 -36.19900 -35.66889 -34.02708 -33.33410 -32.13534 -31.07020 -29.62856 -28.22902 -28.19608 -26.48030 -25.08925 -24.14888 -23.32409 -21.88245 -21.47289 -20.58232 -20.44499 -19.05887 -18.37740 -18.17225 -17.12120 -17.07556 -16.79270 -16.51777 -16.29053 -15.58568 -15.34167 -15.22942 -15.12905 -14.81614 -14.76955 -14.59947 -14.46843 -14.36085 -14.15468 -13.84486 -13.38366 -13.27620 -13.04695 -13.00953 -12.96051 -12.80905 -12.70482 -12.61972 -12.47787 -12.34766 -12.28510 -12.13404 -12.07616 -11.96352 -11.72885 -11.42102 -11.24728 -10.96441 -10.81337 -10.59822 -10.49775 -10.26124 -10.03992 -9.42884 -8.13485 -6.23294 1.43817 1.44990 1.55507 1.56786 1.68100 2.11517 2.27191 2.45218 2.96892 3.20343 3.65996 3.81931 3.94575 4.00034 4.03996 4.07985 4.09959 4.13443 4.17757 4.23789 4.44082 4.53689 4.56131 4.69756 4.71263 4.72654 4.81974 4.83482 4.87362 4.87995 4.90146 4.95890 4.97531 4.99691 5.01554 5.13299 5.23956 5.33633 5.35515 5.37195 5.40085 5.42206 5.45655 5.58020 5.62510 5.66679 5.84559 5.92403 6.00295 6.31517 6.65584 6.93912 6.96751 7.34281 7.45568 7.54799 8.98491 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.001806 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.682767 B =15496.420116 C =16579.167130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 C -0.148 4.148 4 C -0.162 4.162 5 N -0.711 5.711 6 C 0.515 3.485 7 O -0.575 6.575 8 C -0.141 4.141 9 C 0.159 3.841 10 N -0.732 5.732 11 C 0.701 3.299 12 O -0.640 6.640 13 N -0.624 5.624 14 C 0.118 3.882 15 C -0.113 4.113 16 C -0.072 4.072 17 C 0.031 3.969 18 C -0.524 4.524 19 H 0.071 0.929 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.291 1.291 25 H -0.258 1.258 26 C -0.122 4.122 27 C 0.136 3.864 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.412 0.588 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.066 0.934 48 H -0.018 1.018 49 H -0.016 1.016 50 H 0.260 0.740 51 H 0.041 0.959 52 H 0.070 0.930 53 H 0.075 0.925 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 21.902 -22.544 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.220 4.220 5 N -0.365 5.365 6 C 0.302 3.698 7 O -0.454 6.454 8 C -0.180 4.180 9 C 0.034 3.966 10 N -0.391 5.391 11 C 0.402 3.598 12 O -0.522 6.522 13 N -0.361 5.361 14 C -0.004 4.004 15 C -0.152 4.152 16 C -0.091 4.091 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.217 1.217 25 H -0.182 1.182 26 C -0.161 4.161 27 C 0.013 3.987 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.252 0.748 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.001 0.999 49 H 0.003 0.997 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.089 0.911 53 H 0.094 0.906 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.196 21.073 -23.528 32.187 hybrid contribution 0.173 0.007 1.635 1.644 sum 6.369 21.080 -21.893 31.052 Atomic orbital electron populations 1.22198 0.95243 1.02186 1.02466 1.20429 0.93749 0.93238 0.84808 1.22037 1.02237 0.92323 1.03921 1.22186 1.01202 1.01195 0.97389 1.46068 1.53567 1.11281 1.25548 1.20713 0.79495 0.82338 0.87241 1.90709 1.39319 1.67124 1.48289 1.21762 1.05023 0.93574 0.97690 1.20680 0.98329 0.91479 0.86121 1.45026 1.57025 1.10063 1.27012 1.16022 0.80292 0.82149 0.81310 1.90875 1.40991 1.69398 1.50911 1.47384 1.52765 1.10221 1.25691 1.21959 0.94184 0.97619 0.86679 1.21868 1.00928 0.96043 0.96329 1.21028 0.98194 0.95942 0.93940 1.19040 0.94927 0.94320 0.92357 1.21678 1.04287 1.38825 0.91415 0.91116 1.26010 0.97346 0.95724 1.01248 1.70129 1.26079 1.46225 1.15550 0.85482 0.79660 0.78114 0.77989 1.19878 1.21677 1.18235 1.21924 0.98589 1.01040 0.94508 1.21431 1.01382 0.79630 0.96267 0.92249 0.90933 0.93489 0.90786 0.90205 0.90976 0.93451 0.90965 0.92032 0.74594 0.85411 0.84853 0.93775 0.93071 0.74793 0.89330 0.87879 0.93906 0.90182 0.91568 0.99947 0.99728 0.93166 0.94015 0.91115 0.90633 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.40 71.98 0.60 -1.68 16 2 C 0.16 1.73 1.06 3.61 0.00 1.73 16 3 C -0.15 -0.65 8.59 71.98 0.62 -0.03 16 4 C -0.16 -2.16 8.40 71.98 0.60 -1.56 16 5 N -0.71 -6.57 5.10 -422.91 -2.16 -8.73 16 6 C 0.52 8.02 7.25 87.66 0.64 8.65 16 7 O -0.57 -14.68 12.19 -3.07 -0.04 -14.71 16 8 C -0.14 -1.43 5.81 29.85 0.17 -1.26 16 9 C 0.16 3.33 4.97 86.38 0.43 3.76 16 10 N -0.73 -15.34 5.46 -478.53 -2.62 -17.96 16 11 C 0.70 21.44 8.30 179.06 1.49 22.93 16 12 O -0.64 -25.65 15.77 -3.99 -0.06 -25.71 16 13 N -0.62 -17.52 2.97 -836.06 -2.48 -20.00 16 14 C 0.12 2.65 6.42 86.51 0.56 3.21 16 15 C -0.11 -3.61 5.21 30.82 0.16 -3.45 16 16 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 17 C 0.03 1.56 4.45 29.85 0.13 1.69 16 18 C -0.52 -28.03 8.39 25.60 0.21 -27.82 16 19 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 22 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 C -0.12 -4.23 5.36 30.67 0.16 -4.06 16 27 C 0.14 4.08 6.44 86.36 0.56 4.63 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.99 6.17 -2.39 -0.01 0.98 16 31 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.05 0.97 6.17 -2.39 -0.01 0.95 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 0.98 8.47 -92.71 -0.79 0.19 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.04 1.20 8.10 -2.38 -0.02 1.18 16 41 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 42 H 0.41 5.53 5.96 -92.71 -0.55 4.98 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.10 1.57 5.64 -2.39 -0.01 1.55 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 2.62 6.91 -2.38 -0.02 2.60 16 47 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 48 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 49 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 50 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 51 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 53 H 0.08 2.47 6.99 -2.39 -0.02 2.45 16 54 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -81.02 418.52 1.28 -79.74 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.45 Total: 15.07 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.78 Total: 4.10 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -6.97 Total: -103.22 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.10 Total: -40.42 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -81.02 1.28 -79.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564893305.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.952 kcal (2) G-P(sol) polarization free energy of solvation -81.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds