Wall clock time and date at job start Sat Apr 11 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 C 1.53008 * 109.46908 * 119.99330 * 2 1 3 5 5 N 1.46899 * 109.46800 * 65.00267 * 4 2 1 6 6 C 1.46848 * 111.00064 * 189.99679 * 5 4 2 7 7 C 1.53031 * 109.52394 * 174.15931 * 6 5 4 8 8 C 1.53117 * 109.27905 * 59.18596 * 7 6 5 9 9 N 1.46501 * 109.52266 * 182.37708 * 8 7 6 10 10 C 1.34777 * 119.99764 * 204.87244 * 9 8 7 11 11 O 1.21595 * 120.00115 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00174 * 179.97438 * 10 9 8 13 13 C 1.47015 * 125.64408 * 359.69050 * 12 10 9 14 14 C 1.54335 * 107.26282 * 178.84969 * 13 12 10 15 15 C 1.55156 * 103.02295 * 338.13978 * 14 13 12 16 16 O 1.42900 * 111.00455 * 277.23200 * 15 14 13 17 17 C 1.50698 * 111.03766 * 153.39575 * 15 14 13 18 18 H 1.07997 * 120.00107 * 272.60938 * 17 15 14 19 19 C 1.37873 * 120.00066 * 92.61285 * 17 15 14 20 20 N 1.31521 * 119.99981 * 173.51879 * 19 17 15 21 21 Si 1.86802 * 120.00036 * 353.51538 * 19 17 15 22 22 H 1.48501 * 109.46914 * 87.32482 * 21 19 17 23 23 H 1.48501 * 109.47314 * 207.32051 * 21 19 17 24 24 H 1.48494 * 109.47304 * 327.32456 * 21 19 17 25 25 C 1.47424 * 125.64918 * 179.97438 * 12 10 9 26 26 C 1.53124 * 109.20917 * 302.30883 * 8 7 6 27 27 C 1.46853 * 111.00067 * 65.78961 * 5 4 2 28 28 H 1.09003 * 109.47028 * 60.01055 * 1 2 3 29 29 H 1.08998 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47293 * 300.00580 * 1 2 3 31 31 H 1.08996 * 109.47767 * 239.99489 * 2 1 3 32 32 H 1.08990 * 109.47360 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46633 * 299.99641 * 3 2 1 34 34 H 1.09001 * 109.47536 * 59.98909 * 3 2 1 35 35 H 1.08994 * 109.47212 * 305.00607 * 4 2 1 36 36 H 1.08997 * 109.47279 * 184.99887 * 4 2 1 37 37 H 1.09005 * 109.45855 * 54.14848 * 6 5 4 38 38 H 1.08990 * 109.46272 * 294.18277 * 6 5 4 39 39 H 1.09003 * 109.50603 * 299.24170 * 7 6 5 40 40 H 1.09007 * 109.53527 * 179.14509 * 7 6 5 41 41 H 1.08996 * 109.52307 * 62.24542 * 8 7 6 42 42 H 0.97000 * 120.00723 * 24.87260 * 9 8 7 43 43 H 1.08999 * 109.88564 * 298.39474 * 13 12 10 44 44 H 1.08999 * 109.88448 * 59.56132 * 13 12 10 45 45 H 1.09007 * 110.85242 * 219.67020 * 14 13 12 46 46 H 1.09003 * 110.51798 * 96.45453 * 14 13 12 47 47 H 0.96694 * 114.00013 * 168.39537 * 16 15 14 48 48 H 0.97003 * 119.99530 * 179.97438 * 20 19 17 49 49 H 1.09004 * 110.36733 * 322.93088 * 25 12 10 50 50 H 1.08999 * 110.36813 * 85.14165 * 25 12 10 51 51 H 1.09005 * 109.49877 * 177.62435 * 26 8 7 52 52 H 1.09000 * 109.50574 * 297.74537 * 26 8 7 53 53 H 1.09001 * 109.45984 * 305.85177 * 27 5 4 54 54 H 1.08995 * 109.46097 * 65.83279 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6514 -2.1366 1.1906 6 6 1.9123 -2.8076 2.4705 7 6 1.3638 -4.2353 2.4206 8 6 2.0395 -4.9968 1.2769 9 7 1.4774 -6.3468 1.1882 10 6 2.2016 -7.3437 0.6421 11 8 3.3213 -7.1225 0.2226 12 7 1.6848 -8.5858 0.5609 13 6 0.3530 -8.9921 1.0326 14 6 0.1887 -10.4912 0.7048 15 6 1.2176 -10.7148 -0.4347 16 8 0.6739 -10.3292 -1.6988 17 6 1.6875 -12.1463 -0.4662 18 1 2.5261 -12.4529 0.1414 19 6 1.0469 -13.0646 -1.2706 20 7 1.5326 -14.2803 -1.3967 21 14 -0.5111 -12.5822 -2.1814 22 1 -0.1524 -11.9744 -3.4880 23 1 -1.3451 -13.7895 -2.4095 24 1 -1.2740 -11.5993 -1.3710 25 6 2.3637 -9.7632 -0.0102 26 6 1.7933 -4.2526 -0.0385 27 6 2.3293 -2.8229 0.0834 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2616 2.1370 36 1 3.1263 -0.6443 1.2954 37 1 1.4228 -2.2584 3.2749 38 1 2.9865 -2.8373 2.6526 39 1 0.2873 -4.2060 2.2523 40 1 1.5709 -4.7386 3.3652 41 1 3.1113 -5.0600 1.4645 42 1 0.5841 -6.5233 1.5225 43 1 0.2770 -8.8354 2.1086 44 1 -0.4148 -8.4154 0.5168 45 1 -0.8227 -10.7041 0.3584 46 1 0.4363 -11.1016 1.5733 47 1 1.3274 -10.2814 -2.4099 48 1 1.0817 -14.9265 -1.9624 49 1 2.9582 -9.4750 -0.8771 50 1 2.9948 -10.2385 0.7407 51 1 2.3077 -4.7678 -0.8498 52 1 0.7235 -4.2235 -0.2455 53 1 2.1426 -2.2849 -0.8460 54 1 3.4015 -2.8528 0.2768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591903241.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:20 Heat of formation + Delta-G solvation = -105.418758 kcal Electronic energy + Delta-G solvation = -30799.544389 eV Core-core repulsion = 26769.729492 eV Total energy + Delta-G solvation = -4029.814897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50605 -40.29488 -39.25168 -37.17370 -36.31852 -35.13269 -34.45076 -32.52008 -31.85690 -31.28709 -29.91235 -27.89719 -27.44629 -26.40596 -24.35703 -24.28351 -23.38475 -21.57252 -21.25095 -20.85951 -20.56706 -19.52953 -18.90184 -17.64774 -17.12620 -16.99152 -16.78201 -16.50563 -16.21925 -15.87867 -15.60349 -15.44822 -15.15494 -15.06434 -14.62781 -14.52373 -14.43913 -14.06789 -13.95947 -13.72407 -13.50082 -13.33854 -13.26576 -13.16088 -13.00266 -12.75581 -12.68116 -12.41667 -12.26887 -12.20837 -12.19080 -12.00787 -11.94893 -11.80280 -11.59920 -11.53808 -11.29824 -11.23739 -11.18076 -10.63529 -10.40627 -10.16014 -9.42030 -9.25798 -8.33274 -6.46930 1.51599 1.53813 1.60744 1.75546 2.12831 2.46526 2.89853 2.97392 3.03113 3.49235 3.69974 3.79070 3.85371 3.98630 4.03827 4.09053 4.13357 4.23971 4.28069 4.29736 4.38969 4.42967 4.47401 4.58254 4.61305 4.63288 4.73080 4.76126 4.82249 4.83004 4.88262 4.92494 4.94846 4.99271 5.04598 5.10552 5.13610 5.18175 5.19475 5.22882 5.28588 5.32782 5.38989 5.48852 5.54140 5.56497 5.59316 6.05439 6.08937 6.13759 6.17624 6.58800 6.89471 7.02397 7.30800 7.55344 8.79563 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.002142 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.519670 B =13070.106135 C =13404.071325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.061 3.939 5 N -0.537 5.537 6 C 0.061 3.939 7 C -0.112 4.112 8 C 0.164 3.836 9 N -0.725 5.725 10 C 0.716 3.284 11 O -0.640 6.640 12 N -0.631 5.631 13 C 0.108 3.892 14 C -0.118 4.118 15 C 0.217 3.783 16 O -0.559 6.559 17 C -0.548 4.548 18 H 0.044 0.956 19 C 0.024 3.976 20 N -0.936 5.936 21 Si 1.011 2.989 22 H -0.288 1.288 23 H -0.337 1.337 24 H -0.253 1.253 25 C 0.118 3.882 26 C -0.119 4.119 27 C 0.064 3.936 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.099 0.901 38 H 0.030 0.970 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.409 0.591 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.379 0.621 48 H 0.267 0.733 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.044 0.956 52 H 0.076 0.924 53 H 0.084 0.916 54 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 30.570 8.266 32.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.066 4.066 5 N -0.262 5.262 6 C -0.068 4.068 7 C -0.150 4.150 8 C 0.059 3.941 9 N -0.380 5.380 10 C 0.418 3.582 11 O -0.523 6.523 12 N -0.368 5.368 13 C -0.014 4.014 14 C -0.156 4.156 15 C 0.176 3.824 16 O -0.367 6.367 17 C -0.586 4.586 18 H 0.062 0.938 19 C -0.176 4.176 20 N -0.574 5.574 21 Si 0.845 3.155 22 H -0.216 1.216 23 H -0.270 1.270 24 H -0.179 1.179 25 C -0.006 4.006 26 C -0.159 4.159 27 C -0.065 4.065 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.228 0.772 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.062 0.938 52 H 0.094 0.906 53 H 0.102 0.898 54 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.270 30.659 8.205 32.172 hybrid contribution 1.017 -0.894 -0.796 1.571 sum -4.253 29.764 7.409 30.966 Atomic orbital electron populations 1.21662 0.94411 1.01863 1.01115 1.21154 0.96856 0.95988 0.97410 1.21794 1.00802 0.95292 1.02330 1.22200 0.97754 0.87295 0.99353 1.61966 1.58238 1.02371 1.03582 1.22055 0.98799 0.94037 0.91861 1.21803 1.01589 0.94433 0.97153 1.20897 0.97673 0.79483 0.96070 1.45051 1.19678 1.07902 1.65398 1.15649 0.83685 0.79889 0.78993 1.90857 1.21191 1.83081 1.57126 1.47632 1.18422 1.06987 1.63728 1.22132 0.83396 0.95889 0.99967 1.22857 1.00255 0.94473 0.98013 1.20133 0.89978 0.90387 0.81905 1.86062 1.40406 1.89753 1.20529 1.21333 1.16811 0.93272 1.27139 0.93782 1.25882 1.00789 0.94303 0.96596 1.70096 1.41330 1.06358 1.39621 0.84662 0.78307 0.73785 0.78742 1.21567 1.26968 1.17862 1.22603 0.95974 0.84617 0.97453 1.21916 1.02038 0.94765 0.97131 1.22011 0.95178 0.93629 0.95663 0.93338 0.92633 0.92668 0.92029 0.92864 0.92291 0.92018 0.89654 0.95199 0.88295 0.95166 0.89370 0.89768 0.92431 0.75480 0.89182 0.90434 0.90031 0.89668 0.77215 0.92441 0.92562 0.92539 0.93762 0.90558 0.89816 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.08 71.98 0.65 -0.94 16 2 C -0.10 -1.12 2.84 -10.79 -0.03 -1.15 16 3 C -0.14 -1.37 9.19 71.98 0.66 -0.70 16 4 C 0.06 0.74 4.35 86.31 0.38 1.12 16 5 N -0.54 -7.77 4.11 -896.09 -3.68 -11.46 16 6 C 0.06 0.79 5.46 86.32 0.47 1.26 16 7 C -0.11 -1.57 5.57 30.64 0.17 -1.40 16 8 C 0.16 3.56 2.52 45.07 0.11 3.68 16 9 N -0.73 -17.79 5.04 -457.42 -2.31 -20.10 16 10 C 0.72 24.82 8.46 179.05 1.51 26.33 16 11 O -0.64 -27.64 16.26 -4.02 -0.07 -27.70 16 12 N -0.63 -21.80 3.33 -829.78 -2.76 -24.56 16 13 C 0.11 3.04 6.15 86.73 0.53 3.58 16 14 C -0.12 -4.21 5.90 31.79 0.19 -4.02 16 15 C 0.22 9.29 0.70 -10.16 -0.01 9.28 16 16 O -0.56 -23.26 8.52 -148.98 -1.27 -24.53 16 17 C -0.55 -29.22 8.89 25.60 0.23 -29.00 16 18 H 0.04 2.63 8.00 -2.91 -0.02 2.60 16 19 C 0.02 1.34 5.46 84.65 0.46 1.81 16 20 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 21 Si 1.01 47.44 24.93 68.60 1.71 49.15 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.34 -16.32 7.11 99.48 0.71 -15.62 16 24 H -0.25 -11.10 5.42 99.48 0.54 -10.56 16 25 C 0.12 4.80 6.07 86.85 0.53 5.33 16 26 C -0.12 -2.59 5.68 30.69 0.17 -2.42 16 27 C 0.06 1.14 5.30 86.37 0.46 1.60 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.81 7.75 -2.39 -0.02 0.79 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.84 6.22 -2.39 -0.01 0.83 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 0.86 7.99 -2.39 -0.02 0.84 16 36 H 0.03 0.39 8.12 -2.39 -0.02 0.37 16 37 H 0.10 0.93 8.02 -2.38 -0.02 0.92 16 38 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.06 1.57 7.58 -2.39 -0.02 1.56 16 42 H 0.41 7.71 7.59 -92.71 -0.70 7.01 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.91 6.65 -2.38 -0.02 2.89 16 46 H 0.08 3.03 8.03 -2.39 -0.02 3.01 16 47 H 0.38 14.45 8.98 -74.06 -0.67 13.79 16 48 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.06 2.41 8.02 -2.39 -0.02 2.39 16 50 H 0.06 2.42 7.98 -2.39 -0.02 2.40 16 51 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 52 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.08 1.42 6.12 -2.39 -0.01 1.41 16 54 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -70.08 408.61 -2.24 -72.32 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.66 Total: 28.86 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.49 Total: 14.35 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -8.45 Total: -112.45 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -1.33 Total: -52.23 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.71 Total: 49.15 kcal Total: -70.08 -2.24 -72.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591903241.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.098 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds