Wall clock time and date at job start Sat Apr 11 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46729 * 2 1 4 4 C 1.53000 * 109.46773 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46876 * 179.97438 * 4 3 2 6 6 C 1.46849 * 110.99909 * 45.79229 * 5 4 3 7 7 C 1.53033 * 109.52327 * 185.83937 * 6 5 4 8 8 C 1.53124 * 109.28006 * 300.81862 * 7 6 5 9 9 N 1.46495 * 109.52179 * 177.55789 * 8 7 6 10 10 C 1.34779 * 119.99939 * 85.32277 * 9 8 7 11 11 O 1.21590 * 119.99896 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00483 * 179.97438 * 10 9 8 13 13 C 1.47029 * 125.64296 * 0.02562 * 12 10 9 14 14 C 1.54327 * 107.26759 * 181.02804 * 13 12 10 15 15 C 1.55158 * 102.94376 * 22.19106 * 14 13 12 16 16 O 1.42901 * 111.00196 * 82.57430 * 15 14 13 17 17 C 1.50699 * 111.00350 * 206.38738 * 15 14 13 18 18 H 1.08004 * 120.00280 * 118.09126 * 17 15 14 19 19 C 1.37884 * 119.99906 * 298.09655 * 17 15 14 20 20 N 1.31513 * 119.99596 * 187.05245 * 19 17 15 21 21 Si 1.86795 * 120.00087 * 7.04622 * 19 17 15 22 22 H 1.48505 * 109.46873 * 84.72152 * 21 19 17 23 23 H 1.48495 * 109.47145 * 204.71871 * 21 19 17 24 24 H 1.48498 * 109.47107 * 324.72588 * 21 19 17 25 25 C 1.47423 * 125.65422 * 179.71824 * 12 10 9 26 26 C 1.53118 * 109.15622 * 57.65268 * 8 7 6 27 27 C 1.46848 * 111.00020 * 169.99986 * 5 4 3 28 28 H 1.09004 * 109.46735 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47534 * 300.00439 * 1 2 3 30 30 H 1.08994 * 109.47012 * 60.01012 * 1 2 3 31 31 H 1.08998 * 109.47986 * 239.99473 * 2 1 3 32 32 H 1.08998 * 109.47485 * 119.99114 * 2 1 3 33 33 H 1.08993 * 109.47471 * 59.99523 * 3 2 1 34 34 H 1.08994 * 109.46548 * 299.99273 * 3 2 1 35 35 H 1.09006 * 109.47436 * 59.99875 * 4 3 2 36 36 H 1.08990 * 109.47876 * 299.99656 * 4 3 2 37 37 H 1.09007 * 109.46010 * 305.85420 * 6 5 4 38 38 H 1.09000 * 109.46225 * 65.82413 * 6 5 4 39 39 H 1.09005 * 109.50295 * 180.87810 * 7 6 5 40 40 H 1.09000 * 109.50652 * 60.76058 * 7 6 5 41 41 H 1.08995 * 109.51700 * 297.75494 * 8 7 6 42 42 H 0.96997 * 120.00457 * 265.31560 * 9 8 7 43 43 H 1.08999 * 109.88154 * 300.44180 * 13 12 10 44 44 H 1.09000 * 109.88359 * 61.61246 * 13 12 10 45 45 H 1.08995 * 110.71894 * 140.55786 * 14 13 12 46 46 H 1.09008 * 110.71618 * 263.64915 * 14 13 12 47 47 H 0.96701 * 113.99316 * 179.97438 * 16 15 14 48 48 H 0.97000 * 119.99809 * 179.97438 * 20 19 17 49 49 H 1.09007 * 110.36044 * 274.74424 * 25 12 10 50 50 H 1.09003 * 110.36343 * 37.06177 * 25 12 10 51 51 H 1.09006 * 109.50200 * 182.40022 * 26 8 7 52 52 H 1.09001 * 109.53381 * 62.30853 * 26 8 7 53 53 H 1.09002 * 109.46113 * 294.18001 * 27 5 4 54 54 H 1.09005 * 109.45914 * 54.14864 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8277 0.0000 6 6 3.3332 3.6430 0.9820 7 6 3.7658 5.1052 0.8526 8 6 5.2747 5.2091 1.0914 9 7 5.7044 6.5980 0.9115 10 6 5.6196 7.4679 1.9375 11 8 5.1861 7.1000 3.0122 12 7 6.0153 8.7456 1.7722 13 6 6.5557 9.3216 0.5321 14 6 6.8925 10.7995 0.8222 15 6 7.0516 10.8232 2.3654 16 8 8.3585 10.3938 2.7522 17 6 6.7503 12.1923 2.9184 18 1 5.9308 12.3276 3.6088 19 6 7.5208 13.2724 2.5429 20 7 7.3489 14.4377 3.1279 21 14 8.8087 13.0804 1.2037 22 1 8.1689 13.2481 -0.1259 23 1 9.8629 14.1114 1.3793 24 1 9.4180 11.7291 1.2929 25 6 5.9721 9.7987 2.8030 26 6 6.0052 4.3133 0.0872 27 6 5.5077 2.8740 0.2387 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9565 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9291 0.8908 37 1 2.2617 3.5637 0.7984 38 1 3.5568 3.2857 1.9872 39 1 3.2380 5.7076 1.5921 40 1 3.5300 5.4674 -0.1480 41 1 5.5062 4.8836 2.1055 42 1 6.0499 6.8917 0.0540 43 1 7.4585 8.7866 0.2375 44 1 5.8103 9.2600 -0.2608 45 1 7.8241 11.0856 0.3340 46 1 6.0772 11.4501 0.5057 47 1 8.5050 10.3924 3.7081 48 1 7.8912 15.1974 2.8640 49 1 4.9880 10.2671 2.8255 50 1 6.2179 9.3833 3.7803 51 1 7.0775 4.3499 0.2796 52 1 5.8052 4.6627 -0.9257 53 1 5.7211 2.5203 1.2474 54 1 6.0156 2.2362 -0.4848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591941092.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:23 Heat of formation + Delta-G solvation = -99.859572 kcal Electronic energy + Delta-G solvation = -30452.162178 eV Core-core repulsion = 26422.588346 eV Total energy + Delta-G solvation = -4029.573833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50527 -40.26044 -39.16022 -36.93542 -36.13214 -35.21109 -34.50225 -32.80385 -31.93250 -31.57117 -29.96413 -29.06981 -27.09605 -25.28646 -24.42385 -23.92164 -22.93038 -21.68266 -21.55993 -21.15076 -20.78714 -19.48011 -18.85058 -17.63507 -17.03268 -16.94296 -16.63075 -16.53176 -16.44218 -15.93144 -15.65823 -15.35965 -15.14409 -15.07238 -14.79420 -14.60415 -14.52534 -14.22457 -14.08561 -13.88252 -13.75166 -13.25395 -13.16875 -13.10940 -13.06241 -12.80423 -12.49782 -12.37446 -12.32078 -12.20288 -12.17810 -12.05413 -11.81721 -11.78111 -11.57775 -11.49835 -11.30812 -11.25136 -10.99087 -10.75777 -10.41013 -10.15738 -9.41573 -9.28186 -8.36280 -6.51561 1.38272 1.47083 1.60409 1.66473 2.12206 2.39729 2.89263 2.98266 3.01214 3.54245 3.68659 3.81040 3.82530 3.96637 4.01255 4.05463 4.11172 4.21014 4.22572 4.26793 4.38723 4.42845 4.44577 4.50464 4.57430 4.62287 4.64433 4.68610 4.74801 4.79968 4.88149 4.91593 4.94760 4.95608 4.99609 5.05301 5.09140 5.11172 5.15616 5.17934 5.25723 5.29121 5.40419 5.42545 5.47812 5.51000 5.58028 6.06184 6.07933 6.12438 6.15375 6.59419 6.99846 7.12089 7.28920 7.54653 8.77866 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031708 B = 0.001964 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.852237 B =14256.265163 C =14574.027553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.121 4.121 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.059 3.941 7 C -0.121 4.121 8 C 0.163 3.837 9 N -0.725 5.725 10 C 0.716 3.284 11 O -0.640 6.640 12 N -0.630 5.630 13 C 0.110 3.890 14 C -0.129 4.129 15 C 0.216 3.784 16 O -0.573 6.573 17 C -0.554 4.554 18 H 0.038 0.962 19 C 0.039 3.961 20 N -0.933 5.933 21 Si 0.940 3.060 22 H -0.263 1.263 23 H -0.308 1.308 24 H -0.221 1.221 25 C 0.121 3.879 26 C -0.113 4.113 27 C 0.060 3.940 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.409 0.591 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.375 0.625 48 H 0.269 0.731 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.082 0.918 52 H 0.089 0.911 53 H 0.030 0.970 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -28.326 -13.122 31.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.071 4.071 5 N -0.267 5.267 6 C -0.069 4.069 7 C -0.160 4.160 8 C 0.058 3.942 9 N -0.380 5.380 10 C 0.418 3.582 11 O -0.522 6.522 12 N -0.367 5.367 13 C -0.012 4.012 14 C -0.167 4.167 15 C 0.175 3.825 16 O -0.380 6.380 17 C -0.592 4.592 18 H 0.057 0.943 19 C -0.162 4.162 20 N -0.572 5.572 21 Si 0.765 3.235 22 H -0.188 1.188 23 H -0.237 1.237 24 H -0.144 1.144 25 C -0.003 4.003 26 C -0.151 4.151 27 C -0.068 4.068 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.245 0.755 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.223 0.777 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.101 0.899 52 H 0.108 0.892 53 H 0.048 0.952 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.380 -28.386 -13.447 32.051 hybrid contribution 0.514 0.803 1.326 1.633 sum -5.865 -27.582 -12.121 30.694 Atomic orbital electron populations 1.21771 0.95632 1.01930 1.01763 1.21468 0.96086 0.96003 1.02293 1.21754 0.94320 0.97499 1.02333 1.22184 0.95579 0.88130 1.01211 1.62075 1.03994 1.11182 1.49442 1.22088 0.99638 0.92120 0.93073 1.21919 0.95457 0.96439 1.02163 1.20898 0.94266 0.79384 0.99651 1.45044 1.69505 1.10053 1.13427 1.15632 0.78479 0.79839 0.84207 1.90850 1.55392 1.78089 1.27885 1.47618 1.66400 1.07802 1.14868 1.22086 0.99235 0.93586 0.86254 1.22933 1.02321 0.95962 0.95474 1.19992 0.80241 0.89810 0.92437 1.86383 1.33605 1.89633 1.28412 1.21351 1.16643 0.92261 1.28913 0.94332 1.25763 0.98403 0.94159 0.97875 1.70069 1.41873 1.02431 1.42780 0.86067 0.78768 0.79363 0.79292 1.18818 1.23666 1.14368 1.22568 0.99644 0.87199 0.90914 1.21809 0.99872 0.93900 0.99516 1.22060 0.87962 0.96434 1.00331 0.92213 0.93144 0.92635 0.91290 0.92136 0.92251 0.91350 0.89606 0.94990 0.89086 0.95776 0.93552 0.90342 0.92524 0.75467 0.90148 0.89020 0.90455 0.89466 0.77726 0.92253 0.92505 0.92796 0.89938 0.89247 0.95172 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.14 5.93 30.60 0.18 -0.96 16 3 C -0.12 -1.39 4.46 30.60 0.14 -1.26 16 4 C 0.06 0.68 5.27 86.30 0.46 1.14 16 5 N -0.54 -8.17 4.81 -896.34 -4.31 -12.48 16 6 C 0.06 1.07 4.85 86.32 0.42 1.48 16 7 C -0.12 -2.61 5.67 30.65 0.17 -2.44 16 8 C 0.16 3.65 2.52 45.07 0.11 3.77 16 9 N -0.72 -18.29 5.04 -457.44 -2.31 -20.60 16 10 C 0.72 25.42 8.46 179.06 1.51 26.94 16 11 O -0.64 -28.06 16.26 -4.00 -0.07 -28.13 16 12 N -0.63 -22.48 3.32 -829.29 -2.76 -25.24 16 13 C 0.11 3.24 6.15 86.73 0.53 3.77 16 14 C -0.13 -4.79 4.62 31.78 0.15 -4.64 16 15 C 0.22 9.46 0.71 -10.07 -0.01 9.46 16 16 O -0.57 -24.47 10.84 -148.98 -1.62 -26.09 16 17 C -0.55 -29.81 8.83 25.60 0.23 -29.58 16 18 H 0.04 2.33 8.03 -2.91 -0.02 2.30 16 19 C 0.04 2.14 5.47 84.66 0.46 2.60 16 20 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 21 Si 0.94 42.34 23.98 68.60 1.65 43.99 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.31 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.22 -9.48 5.43 99.48 0.54 -8.94 16 25 C 0.12 5.07 6.10 86.93 0.53 5.60 16 26 C -0.11 -1.69 5.57 30.64 0.17 -1.52 16 27 C 0.06 0.84 5.42 86.32 0.47 1.30 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.77 6.21 -2.39 -0.01 0.75 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.03 0.40 8.08 -2.39 -0.02 0.38 16 37 H 0.09 1.50 5.81 -2.38 -0.01 1.48 16 38 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 42 H 0.41 7.96 7.59 -92.71 -0.70 7.26 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.08 2.83 4.80 -2.39 -0.01 2.82 16 46 H 0.09 3.25 8.04 -2.38 -0.02 3.23 16 47 H 0.37 14.65 9.06 -74.06 -0.67 13.98 16 48 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 49 H 0.06 2.49 8.04 -2.38 -0.02 2.47 16 50 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 51 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 52 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 54 H 0.10 1.02 8.12 -2.38 -0.02 1.00 16 Total: -1.00 -70.15 407.65 -3.53 -73.67 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.66 Total: 35.58 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.24 Total: 14.91 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -9.07 Total: -113.94 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -1.68 Total: -54.21 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.65 Total: 43.99 kcal Total: -70.15 -3.53 -73.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591941092.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.186 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds