Wall clock time and date at job start Sat Apr 11 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47340 * 2 1 4 4 C 1.52999 * 109.47247 * 120.00152 * 2 1 3 5 5 N 1.46901 * 109.47095 * 65.00040 * 4 2 1 6 6 C 1.47843 * 111.00307 * 69.15505 * 5 4 2 7 7 C 1.54908 * 104.79676 * 146.36788 * 6 5 4 8 8 C 1.55136 * 101.65102 * 322.92667 * 7 6 5 9 9 H 1.09002 * 110.86237 * 277.20330 * 8 7 6 10 10 C 1.52999 * 110.70552 * 154.03661 * 8 7 6 11 11 N 1.46504 * 109.46986 * 71.40420 * 10 8 7 12 12 C 1.34781 * 119.99837 * 180.02562 * 11 10 8 13 13 O 1.21585 * 120.00037 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99729 * 179.97438 * 12 11 10 15 15 C 1.47427 * 125.64746 * 0.04463 * 14 12 11 16 16 C 1.54908 * 104.82573 * 204.09058 * 15 14 12 17 17 C 1.55155 * 101.58719 * 322.98797 * 16 15 14 18 18 O 1.42900 * 110.87306 * 277.07318 * 17 16 15 19 19 C 1.50696 * 110.72034 * 153.86456 * 17 16 15 20 20 H 1.07997 * 120.00012 * 5.02903 * 19 17 16 21 21 C 1.37877 * 119.99842 * 185.02430 * 19 17 16 22 22 N 1.31516 * 120.00069 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46845 * 90.00621 * 23 21 19 25 25 H 1.48503 * 109.47399 * 210.00111 * 23 21 19 26 26 H 1.48498 * 109.47295 * 330.00717 * 23 21 19 27 27 C 1.47021 * 125.64580 * 180.02562 * 14 12 11 28 28 C 1.47443 * 111.00183 * 190.00129 * 5 4 2 29 29 H 1.09005 * 109.46647 * 300.00129 * 1 2 3 30 30 H 1.08997 * 109.47303 * 59.99500 * 1 2 3 31 31 H 1.08995 * 109.47438 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46877 * 240.00289 * 2 1 3 33 33 H 1.09002 * 109.47325 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47280 * 300.00136 * 3 2 1 35 35 H 1.09000 * 109.46900 * 60.00303 * 3 2 1 36 36 H 1.08995 * 109.47410 * 304.99663 * 4 2 1 37 37 H 1.09006 * 109.47256 * 184.99315 * 4 2 1 38 38 H 1.09003 * 110.36896 * 265.19549 * 6 5 4 39 39 H 1.09000 * 110.37756 * 27.42256 * 6 5 4 40 40 H 1.09004 * 110.98772 * 204.84184 * 7 6 5 41 41 H 1.09000 * 110.99210 * 81.02154 * 7 6 5 42 42 H 1.08998 * 109.47391 * 311.40095 * 10 8 7 43 43 H 1.09000 * 109.47069 * 191.40043 * 10 8 7 44 44 H 0.96997 * 119.99876 * 359.97438 * 11 10 8 45 45 H 1.08994 * 110.36607 * 322.93160 * 15 14 12 46 46 H 1.09001 * 110.36771 * 85.14430 * 15 14 12 47 47 H 1.09007 * 110.99890 * 204.91305 * 16 15 14 48 48 H 1.08999 * 111.00501 * 81.07175 * 16 15 14 49 49 H 0.96705 * 113.99556 * 177.45194 * 18 17 16 50 50 H 0.97000 * 119.99838 * 359.97438 * 22 21 19 51 51 H 1.08999 * 109.88294 * 59.56317 * 27 14 12 52 52 H 1.09004 * 109.88212 * 298.39421 * 27 14 12 53 53 H 1.08996 * 109.89330 * 117.33153 * 28 5 4 54 54 H 1.09000 * 110.01743 * 356.21805 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 -2.1367 1.1903 6 6 2.3938 -2.8463 0.1268 7 6 2.5975 -4.2804 0.6758 8 6 2.8433 -4.0069 2.1829 9 1 3.8842 -3.7392 2.3641 10 6 2.4443 -5.2205 3.0250 11 7 3.4132 -6.2994 2.8163 12 6 3.2629 -7.4739 3.4601 13 8 2.3229 -7.6382 4.2136 14 7 4.1540 -8.4666 3.2678 15 6 5.3341 -8.4031 2.3864 16 6 5.6429 -9.8788 2.0306 17 6 5.3126 -10.5970 3.3656 18 8 6.4160 -10.5225 4.2705 19 6 4.9249 -12.0320 3.1173 20 1 4.9860 -12.4431 2.1205 21 6 4.4924 -12.8199 4.1628 22 7 4.4177 -12.3191 5.3766 23 14 4.0126 -14.5989 3.8552 24 1 5.2050 -15.4686 4.0194 25 1 2.9662 -15.0047 4.8277 26 1 3.4852 -14.7376 2.4739 27 6 4.1103 -9.7921 3.9025 28 6 1.9134 -2.8105 2.4753 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6445 1.2951 38 1 1.8084 -2.8714 -0.7924 39 1 3.3559 -2.3655 -0.0500 40 1 3.4661 -4.7539 0.2182 41 1 1.7026 -4.8853 0.5295 42 1 1.4526 -5.5599 2.7262 43 1 2.4311 -4.9429 4.0789 44 1 4.1625 -6.1687 2.2143 45 1 5.1040 -7.8355 1.4848 46 1 6.1765 -7.9536 2.9122 47 1 6.6933 -10.0057 1.7681 48 1 4.9959 -10.2306 1.2270 49 1 6.2445 -10.9232 5.1337 50 1 4.6672 -11.3955 5.5363 51 1 3.1800 -10.2971 3.6424 52 1 4.1879 -9.6876 4.9847 53 1 0.9770 -3.1652 2.9058 54 1 2.4011 -2.1218 3.1652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591983844.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:28 Heat of formation + Delta-G solvation = -107.124261 kcal Electronic energy + Delta-G solvation = -30253.588231 eV Core-core repulsion = 26223.699378 eV Total energy + Delta-G solvation = -4029.888853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49068 -40.39659 -39.44028 -37.13358 -36.43008 -35.49470 -34.30230 -32.53452 -31.59206 -30.44057 -29.46043 -27.92886 -27.51715 -26.52483 -25.18947 -24.06725 -22.40757 -21.71711 -21.62364 -20.89046 -20.63117 -20.05725 -19.00284 -17.74773 -17.14915 -17.01172 -16.58353 -16.47066 -16.09241 -15.76951 -15.69267 -15.29436 -15.23300 -14.75770 -14.73327 -14.67397 -14.50832 -14.17991 -14.07876 -13.81307 -13.62460 -13.13679 -13.08605 -12.95814 -12.82185 -12.74169 -12.63283 -12.50562 -12.38765 -12.33242 -12.12059 -11.94811 -11.92080 -11.79287 -11.70126 -11.58062 -11.43756 -11.33209 -11.25791 -10.66913 -10.32555 -10.27412 -9.54923 -9.24247 -8.67834 -6.53195 1.50701 1.55527 1.61819 1.79189 2.03232 2.51993 2.91870 2.98064 3.01596 3.55909 3.56456 3.58423 3.83854 3.85981 3.90767 3.96444 4.09547 4.23079 4.30082 4.31317 4.36861 4.37932 4.42129 4.46862 4.49650 4.66059 4.70591 4.73645 4.80937 4.81098 4.85709 4.87016 4.91917 4.93737 5.03843 5.06699 5.09264 5.10220 5.10572 5.16931 5.26663 5.30075 5.32201 5.43235 5.47506 5.52960 5.77075 5.99892 6.02613 6.07971 6.16133 6.43908 6.89783 6.94795 7.27359 7.45866 8.62719 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.001851 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.447501 B =15126.037303 C =15276.139908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.047 3.953 7 C -0.123 4.123 8 C -0.107 4.107 9 H 0.096 0.904 10 C 0.153 3.847 11 N -0.724 5.724 12 C 0.710 3.290 13 O -0.644 6.644 14 N -0.634 5.634 15 C 0.108 3.892 16 C -0.103 4.103 17 C 0.211 3.789 18 O -0.585 6.585 19 C -0.627 4.627 20 H 0.062 0.938 21 C -0.018 4.018 22 N -0.927 5.927 23 Si 1.118 2.882 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.270 1.270 27 C 0.128 3.872 28 C 0.053 3.947 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.409 0.591 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.366 0.634 50 H 0.260 0.740 51 H 0.033 0.967 52 H 0.023 0.977 53 H 0.073 0.927 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 25.375 -13.474 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.072 4.072 5 N -0.260 5.260 6 C -0.081 4.081 7 C -0.161 4.161 8 C -0.127 4.127 9 H 0.114 0.886 10 C 0.029 3.971 11 N -0.381 5.381 12 C 0.412 3.588 13 O -0.527 6.527 14 N -0.371 5.371 15 C -0.014 4.014 16 C -0.140 4.140 17 C 0.171 3.829 18 O -0.393 6.393 19 C -0.665 4.665 20 H 0.080 0.920 21 C -0.218 4.218 22 N -0.567 5.567 23 Si 0.940 3.060 24 H -0.196 1.196 25 H -0.213 1.213 26 H -0.195 1.195 27 C 0.004 3.996 28 C -0.076 4.076 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.246 0.754 45 H 0.124 0.876 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.215 0.785 50 H 0.073 0.927 51 H 0.052 0.948 52 H 0.041 0.959 53 H 0.091 0.909 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.702 24.328 -12.810 27.627 hybrid contribution 1.183 0.896 0.329 1.520 sum -1.519 25.224 -12.481 28.184 Atomic orbital electron populations 1.21678 0.94866 1.01708 1.01004 1.21077 0.96469 0.95959 0.97401 1.21805 1.00975 0.95310 1.02200 1.22428 0.97905 0.87896 0.99003 1.63567 1.56011 1.02491 1.03929 1.23043 0.96824 0.92846 0.95357 1.22804 1.02636 0.97031 0.93621 1.22523 1.01042 0.93584 0.95524 0.88618 1.21174 0.91295 0.85091 0.99541 1.44890 1.31851 1.11957 1.49393 1.15753 0.81475 0.80702 0.80898 1.90864 1.35182 1.82656 1.43948 1.47786 1.27367 1.13483 1.48430 1.22435 0.87020 0.98094 0.93857 1.22642 1.02807 0.93070 0.95531 1.20018 0.81850 0.93101 0.87891 1.86237 1.42032 1.82811 1.28200 1.22692 1.48950 0.97013 0.97849 0.91954 1.27309 0.92588 1.09666 0.92233 1.71043 1.46449 1.16653 1.22578 0.82900 0.77066 0.70018 0.76016 1.19576 1.21330 1.19483 1.22576 1.00555 0.81650 0.94860 1.22717 0.98767 0.94225 0.91863 0.93272 0.92985 0.92819 0.91498 0.92534 0.92108 0.92523 0.90942 0.94396 0.90145 0.92642 0.89384 0.91480 0.92761 0.92684 0.75372 0.87604 0.90833 0.88916 0.89762 0.78510 0.92682 0.94845 0.95863 0.90866 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.08 71.98 0.65 -1.02 16 2 C -0.09 -1.00 2.91 -10.80 -0.03 -1.03 16 3 C -0.15 -1.30 9.19 71.98 0.66 -0.63 16 4 C 0.06 0.68 3.96 86.30 0.34 1.02 16 5 N -0.54 -7.75 4.62 -885.53 -4.09 -11.83 16 6 C 0.05 0.59 5.72 86.77 0.50 1.09 16 7 C -0.12 -1.71 6.44 31.98 0.21 -1.50 16 8 C -0.11 -1.62 2.96 -9.61 -0.03 -1.64 16 9 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.15 3.56 4.97 86.38 0.43 3.98 16 11 N -0.72 -19.46 5.43 -478.53 -2.60 -22.06 16 12 C 0.71 28.23 8.49 179.05 1.52 29.75 16 13 O -0.64 -32.04 16.67 -3.98 -0.07 -32.11 16 14 N -0.63 -25.62 3.33 -829.75 -2.76 -28.38 16 15 C 0.11 3.34 6.57 86.85 0.57 3.91 16 16 C -0.10 -3.82 6.23 31.99 0.20 -3.62 16 17 C 0.21 10.22 0.82 -10.35 -0.01 10.21 16 18 O -0.59 -29.16 13.09 -148.98 -1.95 -31.11 16 19 C -0.63 -33.46 8.12 25.60 0.21 -33.25 16 20 H 0.06 3.24 7.78 -2.91 -0.02 3.22 16 21 C -0.02 -0.99 5.26 84.65 0.45 -0.54 16 22 N -0.93 -53.81 12.96 21.45 0.28 -53.54 16 23 Si 1.12 48.58 29.90 68.60 2.05 50.63 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 27 C 0.13 6.42 5.11 86.73 0.44 6.86 16 28 C 0.05 0.79 6.45 86.65 0.56 1.35 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.82 7.75 -2.39 -0.02 0.80 16 32 H 0.07 0.78 7.34 -2.39 -0.02 0.76 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.90 8.03 -2.39 -0.02 0.88 16 37 H 0.04 0.44 7.85 -2.38 -0.02 0.42 16 38 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 39 H 0.06 0.62 7.62 -2.39 -0.02 0.60 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.15 7.94 -2.39 -0.02 1.13 16 42 H 0.05 1.44 8.00 -2.39 -0.02 1.42 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.41 8.24 6.95 -92.71 -0.64 7.60 16 45 H 0.11 2.31 7.30 -2.39 -0.02 2.29 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 48 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 49 H 0.37 18.92 6.54 -74.05 -0.48 18.43 16 50 H 0.26 15.06 3.86 -92.71 -0.36 14.71 16 51 H 0.03 1.88 7.81 -2.39 -0.02 1.86 16 52 H 0.02 1.27 6.83 -2.38 -0.02 1.26 16 53 H 0.07 1.26 7.82 -2.39 -0.02 1.24 16 54 H 0.07 0.88 7.56 -2.39 -0.02 0.87 16 Total: -1.00 -70.68 414.17 -2.31 -72.99 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.16 Total: 40.46 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.66 Total: 14.93 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -9.17 Total: -115.81 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -2.02 Total: -63.21 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.05 Total: 50.63 kcal Total: -70.68 -2.31 -72.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591983844.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.131 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds