Wall clock time and date at job start Sat Apr 11 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46877 * 2 1 4 4 C 1.52999 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47577 * 304.99825 * 4 3 2 6 6 C 1.52997 * 109.47014 * 65.00175 * 4 3 2 7 7 C 1.50702 * 109.46659 * 185.00145 * 4 3 2 8 8 O 1.21284 * 120.00436 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99721 * 180.02562 * 7 4 3 10 10 C 1.46501 * 119.99796 * 179.97438 * 9 7 4 11 11 C 1.52999 * 109.46734 * 179.97438 * 10 9 7 12 12 N 1.46510 * 109.46794 * 180.02562 * 11 10 9 13 13 C 1.34772 * 119.99715 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00478 * 4.97166 * 13 12 11 15 15 N 1.34773 * 119.99840 * 184.97464 * 13 12 11 16 16 C 1.46930 * 120.63177 * 354.69606 * 15 13 12 17 17 C 1.53194 * 108.89378 * 233.51684 * 16 15 13 18 18 C 1.53073 * 109.29408 * 305.57525 * 17 16 15 19 19 C 1.53041 * 109.65683 * 61.15700 * 18 17 16 20 20 H 1.09000 * 109.50183 * 58.65074 * 19 18 17 21 21 C 1.50697 * 109.49652 * 178.74388 * 19 18 17 22 22 H 1.08000 * 120.00449 * 5.10088 * 21 19 18 23 23 C 1.37878 * 120.00177 * 185.09374 * 21 19 18 24 24 N 1.31518 * 119.99689 * 5.11718 * 23 21 19 25 25 Si 1.86796 * 120.00401 * 185.11026 * 23 21 19 26 26 H 1.48502 * 109.47082 * 85.00065 * 25 23 21 27 27 H 1.48500 * 109.47500 * 205.00336 * 25 23 21 28 28 H 1.48505 * 109.46941 * 325.00246 * 25 23 21 29 29 C 1.46928 * 120.63162 * 174.67575 * 15 13 12 30 30 H 1.08990 * 109.47507 * 59.99997 * 1 2 3 31 31 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47258 * 299.99684 * 1 2 3 33 33 H 1.08996 * 109.47212 * 240.00171 * 2 1 3 34 34 H 1.09003 * 109.47240 * 119.99963 * 2 1 3 35 35 H 1.09005 * 109.46918 * 60.00108 * 3 2 1 36 36 H 1.08990 * 109.47055 * 300.00280 * 3 2 1 37 37 H 1.09000 * 109.47414 * 299.99671 * 6 4 3 38 38 H 1.08996 * 109.47200 * 59.99981 * 6 4 3 39 39 H 1.09005 * 109.46850 * 179.97438 * 6 4 3 40 40 H 0.96995 * 119.99817 * 359.97438 * 9 7 4 41 41 H 1.09004 * 109.46990 * 60.00020 * 10 9 7 42 42 H 1.08996 * 109.47546 * 299.99959 * 10 9 7 43 43 H 1.08992 * 109.47066 * 60.00717 * 11 10 9 44 44 H 1.08998 * 109.47577 * 300.00000 * 11 10 9 45 45 H 0.96996 * 119.99761 * 359.97438 * 12 11 10 46 46 H 1.09003 * 109.58289 * 353.37401 * 16 15 13 47 47 H 1.09004 * 109.58553 * 113.65825 * 16 15 13 48 48 H 1.08996 * 109.49346 * 65.38942 * 17 16 15 49 49 H 1.08999 * 109.49638 * 185.48240 * 17 16 15 50 50 H 1.08999 * 109.34782 * 301.12883 * 18 17 16 51 51 H 1.09004 * 109.43924 * 181.23529 * 18 17 16 52 52 H 0.97000 * 119.99533 * 179.97438 * 24 23 21 53 53 H 1.08999 * 109.58804 * 246.19716 * 29 15 13 54 54 H 1.08993 * 109.58864 * 6.62538 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8531 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0722 2.8580 0.1232 8 8 3.2841 3.7763 0.2045 9 7 5.3973 3.1035 0.1437 10 6 5.8856 4.4795 0.2635 11 6 7.4156 4.4795 0.2630 12 7 7.9040 5.8555 0.3835 13 6 9.2290 6.1009 0.4040 14 8 10.0183 5.1923 0.2320 15 7 9.6791 7.3536 0.6153 16 6 8.7408 8.4803 0.7093 17 6 9.1667 9.5648 -0.2854 18 6 10.6293 9.9381 -0.0311 19 6 11.5180 8.7100 -0.2410 20 1 11.3909 8.3383 -1.2577 21 6 12.9598 9.0888 -0.0199 22 1 13.2108 10.0814 0.3238 23 6 13.9585 8.1681 -0.2563 24 7 13.6625 6.9941 -0.7698 25 14 15.7321 8.5883 0.1525 26 1 15.9937 8.2921 1.5840 27 1 16.6414 7.7761 -0.6952 28 1 15.9713 10.0310 -0.1061 29 6 11.1174 7.6184 0.7564 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.7161 -0.1906 -1.3979 38 1 3.7157 1.4228 -2.1498 39 1 5.1694 0.8336 -1.3089 40 1 6.0276 2.3690 0.0790 41 1 5.5229 4.9139 1.1952 42 1 5.5217 5.0688 -0.5780 43 1 7.7786 4.0451 -0.6684 44 1 7.7793 3.8903 1.1048 45 1 7.2736 6.5899 0.4477 46 1 7.7342 8.1386 0.4685 47 1 8.7569 8.8858 1.7210 48 1 9.0610 9.1873 -1.3024 49 1 8.5365 10.4447 -0.1561 50 1 10.7382 10.2945 0.9932 51 1 10.9284 10.7253 -0.7233 52 1 14.3652 6.3466 -0.9364 53 1 11.3292 7.9551 1.7712 54 1 11.6789 6.7080 0.5467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595641424.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:49 Heat of formation + Delta-G solvation = -116.208495 kcal Electronic energy + Delta-G solvation = -29479.773135 eV Core-core repulsion = 25449.490360 eV Total energy + Delta-G solvation = -4030.282775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37426 -40.96505 -38.60891 -37.24441 -36.65092 -35.45911 -34.83125 -33.42830 -32.85585 -31.58742 -29.84189 -27.49438 -27.00018 -26.17829 -24.94125 -23.61950 -23.33685 -22.12899 -21.67030 -20.77373 -20.42157 -19.13579 -18.29665 -17.95939 -17.34830 -17.04668 -16.78179 -16.62382 -16.44735 -15.98065 -15.37070 -15.24109 -15.21592 -15.17572 -14.79670 -14.73368 -14.50058 -14.27375 -14.06414 -13.84704 -13.54744 -13.46181 -13.14128 -12.92673 -12.86876 -12.83944 -12.72411 -12.68746 -12.31553 -12.22507 -12.13621 -11.85272 -11.83744 -11.71714 -11.62176 -11.39173 -11.29393 -10.94476 -10.82924 -10.76463 -10.51580 -10.27023 -10.14776 -9.28393 -8.11025 -6.25395 1.41481 1.42700 1.52421 1.55714 1.61200 2.20051 2.29510 2.43792 3.08078 3.20766 3.59112 3.72234 3.83423 3.96550 4.02439 4.04606 4.16423 4.28800 4.31318 4.35944 4.39944 4.42534 4.60596 4.64266 4.72683 4.79603 4.81013 4.81274 4.83259 4.87518 4.92483 4.96968 5.04462 5.10877 5.14123 5.22413 5.23870 5.26634 5.30384 5.31271 5.33616 5.45698 5.47914 5.53274 5.58444 5.63196 5.88840 5.96231 6.10948 6.36408 6.47800 6.88630 7.08167 7.19587 7.43997 7.63885 8.94994 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.001717 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.477535 B =16306.433906 C =17143.223779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.120 0.880 6 C -0.145 4.145 7 C 0.515 3.485 8 O -0.583 6.583 9 N -0.718 5.718 10 C 0.122 3.878 11 C 0.135 3.865 12 N -0.733 5.733 13 C 0.696 3.304 14 O -0.637 6.637 15 N -0.627 5.627 16 C 0.110 3.890 17 C -0.127 4.127 18 C -0.104 4.104 19 C 0.037 3.963 20 H -0.012 1.012 21 C -0.536 4.536 22 H 0.062 0.938 23 C 0.011 3.989 24 N -0.915 5.915 25 Si 0.955 3.045 26 H -0.273 1.273 27 H -0.289 1.289 28 H -0.263 1.263 29 C 0.149 3.851 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.416 0.584 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.409 0.591 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.047 0.953 49 H 0.104 0.896 50 H 0.059 0.941 51 H 0.049 0.951 52 H 0.259 0.741 53 H 0.042 0.958 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.837 -10.987 2.938 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.138 0.862 6 C -0.202 4.202 7 C 0.303 3.697 8 O -0.462 6.462 9 N -0.371 5.371 10 C -0.003 4.003 11 C 0.010 3.990 12 N -0.394 5.394 13 C 0.397 3.603 14 O -0.519 6.519 15 N -0.362 5.362 16 C -0.012 4.012 17 C -0.165 4.165 18 C -0.142 4.142 19 C 0.017 3.983 20 H 0.006 0.994 21 C -0.575 4.575 22 H 0.080 0.920 23 C -0.189 4.189 24 N -0.554 5.554 25 Si 0.781 3.219 26 H -0.199 1.199 27 H -0.215 1.215 28 H -0.187 1.187 29 C 0.026 3.974 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.253 0.747 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.248 0.752 46 H 0.118 0.882 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.123 0.877 50 H 0.078 0.922 51 H 0.068 0.932 52 H 0.068 0.932 53 H 0.060 0.940 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.752 -11.138 2.834 27.290 hybrid contribution 1.458 0.168 -0.077 1.470 sum -23.293 -10.970 2.757 25.895 Atomic orbital electron populations 1.21785 0.95906 1.02009 1.01578 1.21582 0.95933 0.95281 1.03063 1.21401 0.92584 0.97696 1.02016 1.21389 0.97501 0.91282 1.02397 0.86172 1.21863 1.01919 1.02101 0.94351 1.21302 0.81595 0.92436 0.74397 1.90692 1.56310 1.48016 1.51205 1.45773 1.07474 1.09123 1.74706 1.21232 0.91498 0.84534 1.03042 1.21167 0.92664 0.82732 1.02460 1.44837 1.04378 1.09779 1.80370 1.16101 0.82911 0.83276 0.78004 1.90894 1.56410 1.45543 1.59005 1.47652 1.08650 1.05467 1.74469 1.21873 0.92124 0.86547 1.00677 1.21924 0.96753 0.99203 0.98634 1.21507 0.94414 0.97461 1.00834 1.18916 0.93911 0.92146 0.93296 0.99386 1.21498 0.91944 0.98661 1.45376 0.91960 1.25889 1.03384 0.95034 0.94580 1.70150 1.34122 1.07426 1.43676 0.85610 0.79664 0.78458 0.78188 1.19895 1.21468 1.18721 1.21501 0.77281 1.00802 0.97857 0.93115 0.91820 0.93207 0.90611 0.91041 0.92809 0.92817 0.89348 0.93122 0.91005 0.74677 0.90515 0.90962 0.91901 0.91300 0.75154 0.88200 0.89864 0.93420 0.87722 0.92208 0.93197 0.93214 0.93966 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.08 5.69 30.60 0.17 -0.90 16 3 C -0.10 -1.32 4.03 30.60 0.12 -1.20 16 4 C -0.10 -1.19 2.72 -11.54 -0.03 -1.22 16 5 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.14 -1.21 8.84 71.98 0.64 -0.58 16 7 C 0.51 9.37 7.16 87.66 0.63 9.99 16 8 O -0.58 -15.65 15.92 -3.04 -0.05 -15.69 16 9 N -0.72 -10.74 5.45 -463.05 -2.52 -13.26 16 10 C 0.12 2.12 5.79 86.38 0.50 2.62 16 11 C 0.13 2.99 5.79 86.38 0.50 3.50 16 12 N -0.73 -19.80 5.46 -478.54 -2.62 -22.41 16 13 C 0.70 27.86 8.29 179.06 1.49 29.34 16 14 O -0.64 -32.58 15.77 -3.97 -0.06 -32.64 16 15 N -0.63 -24.63 2.97 -836.90 -2.49 -27.12 16 16 C 0.11 2.98 6.38 86.36 0.55 3.53 16 17 C -0.13 -3.67 6.09 30.68 0.19 -3.49 16 18 C -0.10 -4.00 5.10 30.63 0.16 -3.84 16 19 C 0.04 1.86 2.13 -11.46 -0.02 1.83 16 20 H -0.01 -0.72 8.13 -2.39 -0.02 -0.74 16 21 C -0.54 -29.63 8.50 25.60 0.22 -29.41 16 22 H 0.06 3.30 7.75 -2.91 -0.02 3.27 16 23 C 0.01 0.61 5.29 84.65 0.45 1.06 16 24 N -0.92 -56.36 11.99 21.45 0.26 -56.10 16 25 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 29 C 0.15 7.35 5.49 86.36 0.47 7.82 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.53 6.56 -2.39 -0.02 0.51 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.90 7.96 -2.38 -0.02 0.88 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.47 6.56 -2.39 -0.02 0.45 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.47 7.56 -2.38 -0.02 0.45 16 40 H 0.42 4.22 7.89 -92.71 -0.73 3.49 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.41 8.29 5.96 -92.71 -0.55 7.74 16 46 H 0.10 1.93 5.65 -2.39 -0.01 1.92 16 47 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 53 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 54 H 0.06 3.62 5.71 -2.39 -0.01 3.60 16 Total: -1.00 -80.89 422.10 0.88 -80.01 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.40 Total: 22.49 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.74 Total: 18.28 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -7.37 Total: -118.89 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.11 Total: -48.34 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -80.89 0.88 -80.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595641424.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.198 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds