Wall clock time and date at job start Sat Apr 11 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47400 * 2 1 4 4 C 1.53006 * 109.46976 * 239.99912 * 2 1 3 5 5 N 1.46505 * 109.47101 * 120.00274 * 2 1 3 6 6 C 1.46761 * 124.34909 * 59.99758 * 5 2 1 7 7 C 1.54473 * 105.47383 * 162.96531 * 6 5 2 8 8 H 1.08996 * 110.97227 * 267.26024 * 7 6 5 9 9 C 1.53002 * 110.97218 * 143.53504 * 7 6 5 10 10 N 1.46499 * 109.47341 * 175.00009 * 9 7 6 11 11 C 1.34774 * 119.99962 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00123 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99898 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47092 * 60.00300 * 15 14 13 17 17 C 1.52997 * 109.47143 * 300.00171 * 15 14 13 18 18 C 1.50706 * 109.46925 * 180.02562 * 15 14 13 19 19 H 1.07999 * 120.00196 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99394 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00338 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99426 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47555 * 90.00165 * 22 20 18 24 24 H 1.48503 * 109.46814 * 210.00053 * 22 20 18 25 25 H 1.48496 * 109.47318 * 329.99545 * 22 20 18 26 26 C 1.54635 * 101.76721 * 25.41617 * 7 6 5 27 27 C 1.34413 * 124.34865 * 239.97562 * 5 2 1 28 28 O 1.21284 * 124.94359 * 0.39409 * 27 5 2 29 29 H 1.08998 * 109.46872 * 300.00049 * 1 2 3 30 30 H 1.09004 * 109.46538 * 60.00152 * 1 2 3 31 31 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47186 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47316 * 300.00059 * 3 2 1 34 34 H 1.08999 * 109.46948 * 59.99606 * 3 2 1 35 35 H 1.08997 * 109.47533 * 299.99815 * 4 2 1 36 36 H 1.08995 * 109.46978 * 60.00407 * 4 2 1 37 37 H 1.09003 * 109.46918 * 180.02562 * 4 2 1 38 38 H 1.09001 * 110.24896 * 43.96295 * 6 5 2 39 39 H 1.09005 * 110.24543 * 281.96823 * 6 5 2 40 40 H 1.08997 * 109.47244 * 54.99595 * 9 7 6 41 41 H 1.09002 * 109.46787 * 295.00220 * 9 7 6 42 42 H 0.96999 * 119.99984 * 0.02562 * 10 9 7 43 43 H 0.97008 * 120.00336 * 0.02562 * 13 11 10 44 44 H 1.09004 * 109.46875 * 60.00324 * 14 13 11 45 45 H 1.09004 * 109.47522 * 300.00473 * 14 13 11 46 46 H 1.08992 * 109.47280 * 179.97438 * 16 15 14 47 47 H 1.09002 * 109.46777 * 300.00347 * 16 15 14 48 48 H 1.09000 * 109.47140 * 59.99774 * 16 15 14 49 49 H 1.09004 * 109.47261 * 299.99863 * 17 15 14 50 50 H 1.09002 * 109.47153 * 60.00035 * 17 15 14 51 51 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 52 52 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 53 53 H 1.08995 * 110.48583 * 93.87566 * 26 7 6 54 54 H 1.08992 * 110.48629 * 216.52692 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1962 6 6 1.7232 -2.0908 1.5225 7 6 2.7667 -2.4946 2.5874 8 1 3.6435 -2.9460 2.1230 9 6 2.1538 -3.4375 3.6249 10 7 3.1968 -3.8933 4.5471 11 6 2.8866 -4.7371 5.5512 12 8 1.7414 -5.1203 5.6915 13 7 3.8463 -5.1568 6.3994 14 6 3.5093 -6.0744 7.4905 15 6 4.7695 -6.3905 8.2987 16 6 5.3411 -5.0956 8.8795 17 6 5.8100 -7.0432 7.3864 18 6 4.4229 -7.3349 9.4208 19 1 3.4057 -7.6759 9.5448 20 6 5.4045 -7.7636 10.2889 21 7 6.6433 -7.3487 10.1375 22 14 4.9750 -8.9348 11.6794 23 1 5.1253 -10.3358 11.2108 24 1 5.8869 -8.6961 12.8270 25 1 3.5716 -8.7033 12.1059 26 6 3.1167 -1.1278 3.2203 27 6 2.7947 -0.1236 2.1355 28 8 3.1814 1.0258 2.1161 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6768 -1.7490 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7217 -1.2490 38 1 1.8286 -2.7152 0.6353 39 1 0.7157 -2.1790 1.9291 40 1 1.7144 -4.2975 3.1195 41 1 1.3803 -2.9099 4.1831 42 1 4.1104 -3.5873 4.4355 43 1 4.7602 -4.8514 6.2873 44 1 3.1018 -6.9968 7.0768 45 1 2.7683 -5.6093 8.1407 46 1 6.2385 -5.3208 9.4555 47 1 5.5917 -4.4128 8.0676 48 1 4.5997 -4.6306 9.5294 49 1 5.4028 -7.9658 6.9726 50 1 6.0608 -6.3604 6.5746 51 1 6.7079 -7.2679 7.9621 52 1 7.3339 -7.6506 10.7481 53 1 2.5019 -0.9471 4.1020 54 1 4.1751 -1.0860 3.4768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596624275.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:59 Heat of formation + Delta-G solvation = -94.279500 kcal Electronic energy + Delta-G solvation = -30115.702456 eV Core-core repulsion = 26086.370593 eV Total energy + Delta-G solvation = -4029.331862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86122 -40.90676 -38.36950 -37.83054 -37.40557 -35.16040 -34.88953 -32.72850 -31.43530 -29.14096 -28.38180 -28.21929 -27.52038 -27.44951 -26.94597 -25.49683 -22.59684 -21.94290 -21.80500 -20.54255 -19.64072 -19.36522 -17.83091 -17.73343 -17.41295 -16.83218 -16.57799 -16.55288 -16.17304 -15.48397 -15.28053 -15.23243 -14.92018 -14.79172 -14.70056 -14.62790 -14.52700 -14.22330 -13.95588 -13.56071 -13.43706 -13.14731 -13.07392 -13.06088 -12.96889 -12.74469 -12.64673 -12.59491 -12.56658 -12.24942 -12.21545 -12.17355 -12.11354 -11.93694 -11.83572 -11.44137 -11.32732 -11.09395 -10.66706 -10.44715 -10.37509 -10.22158 -9.65285 -9.58357 -7.99699 -6.14823 1.44013 1.47052 1.54945 1.58441 1.78818 2.06743 2.28733 2.48360 3.23961 3.29737 3.34746 3.57990 3.76266 3.83706 3.94056 4.04235 4.12136 4.34028 4.47176 4.55355 4.58634 4.62197 4.66985 4.69403 4.71697 4.75307 4.77098 4.81407 4.83891 4.92436 4.95759 4.97186 5.05207 5.10514 5.14515 5.18084 5.19448 5.24738 5.29980 5.37856 5.43342 5.58136 5.69045 5.70469 5.71429 5.73548 6.14091 6.18248 6.19607 6.26288 6.47228 6.89796 7.20265 7.23617 7.52710 7.71618 8.99027 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.001776 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.135805 B =15760.186156 C =16103.748222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C -0.134 4.134 4 C -0.152 4.152 5 N -0.607 5.607 6 C 0.109 3.891 7 C -0.093 4.093 8 H 0.118 0.882 9 C 0.153 3.847 10 N -0.733 5.733 11 C 0.697 3.303 12 O -0.642 6.642 13 N -0.727 5.727 14 C 0.169 3.831 15 C 0.050 3.950 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.526 4.526 19 H 0.044 0.956 20 C 0.027 3.973 21 N -0.899 5.899 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.276 1.276 26 C -0.150 4.150 27 C 0.508 3.492 28 O -0.574 6.574 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.411 0.589 43 H 0.405 0.595 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.061 0.939 47 H 0.038 0.962 48 H 0.016 0.984 49 H 0.017 0.983 50 H 0.038 0.962 51 H 0.060 0.940 52 H 0.259 0.741 53 H 0.104 0.896 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 13.154 -24.376 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.082 3.918 3 C -0.192 4.192 4 C -0.210 4.210 5 N -0.340 5.340 6 C -0.014 4.014 7 C -0.112 4.112 8 H 0.136 0.864 9 C 0.029 3.971 10 N -0.390 5.390 11 C 0.396 3.604 12 O -0.524 6.524 13 N -0.383 5.383 14 C 0.044 3.956 15 C 0.050 3.950 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.565 4.565 19 H 0.063 0.937 20 C -0.173 4.173 21 N -0.538 5.538 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.201 1.201 26 C -0.190 4.190 27 C 0.297 3.703 28 O -0.454 6.454 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.247 0.753 43 H 0.242 0.758 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.035 0.965 49 H 0.037 0.963 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.069 0.931 53 H 0.123 0.877 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.974 13.414 -24.257 28.843 hybrid contribution 0.636 -0.377 1.200 1.409 sum -7.339 13.037 -23.057 27.486 Atomic orbital electron populations 1.22159 0.92930 1.03304 1.02710 1.20652 0.94817 0.92189 0.84178 1.21995 1.00980 0.94565 1.01632 1.22143 1.01142 1.01478 0.96212 1.48569 1.49959 1.13283 1.22235 1.22144 0.99060 0.80974 0.99236 1.22255 1.00179 0.93661 0.95084 0.86380 1.21134 0.89395 0.97305 0.89267 1.44878 1.13447 1.49960 1.30679 1.16169 0.84384 0.79632 0.80169 1.90865 1.21104 1.63702 1.76754 1.45197 1.11195 1.50640 1.31232 1.21081 0.97932 0.90319 0.86284 1.18373 0.90576 0.93656 0.92435 1.21655 1.01060 0.95949 0.99061 1.21650 1.00991 0.97821 0.97196 1.21276 0.94526 1.27794 1.12863 0.93730 1.25449 0.95084 0.97468 0.99280 1.69907 1.00952 1.44827 1.38075 0.85778 0.77877 0.79642 0.79609 1.20511 1.20970 1.20121 1.22513 1.05413 0.93439 0.97656 1.21310 0.77371 0.87679 0.83899 1.90715 1.56532 1.19736 1.78461 0.93554 0.89885 0.90828 0.93502 0.90615 0.93788 0.90677 0.89953 0.93124 0.87539 0.89708 0.90862 0.92162 0.75325 0.75816 0.94602 0.94813 0.92044 0.94337 0.96465 0.96329 0.94306 0.92074 0.93107 0.87736 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.54 71.98 0.61 -0.81 16 2 C 0.16 2.02 1.20 3.60 0.00 2.02 16 3 C -0.13 -2.24 7.00 71.98 0.50 -1.74 16 4 C -0.15 -1.25 8.49 71.98 0.61 -0.64 16 5 N -0.61 -8.30 2.76 -771.03 -2.13 -10.43 16 6 C 0.11 0.90 6.16 86.83 0.54 1.43 16 7 C -0.09 -0.86 3.16 -9.74 -0.03 -0.89 16 8 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 9 C 0.15 2.34 4.98 86.38 0.43 2.77 16 10 N -0.73 -14.47 5.50 -478.55 -2.63 -17.10 16 11 C 0.70 22.02 8.57 179.06 1.53 23.56 16 12 O -0.64 -26.16 16.34 -3.96 -0.06 -26.23 16 13 N -0.73 -23.78 4.96 -478.54 -2.37 -26.16 16 14 C 0.17 7.04 4.50 86.38 0.39 7.43 16 15 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 16 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 17 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 18 C -0.53 -27.55 8.01 25.60 0.21 -27.34 16 19 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 20 C 0.03 1.40 5.15 84.66 0.44 1.84 16 21 N -0.90 -47.53 9.35 21.45 0.20 -47.33 16 22 Si 0.94 42.42 29.54 68.60 2.03 44.45 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C -0.15 -2.03 6.36 30.59 0.19 -1.83 16 27 C 0.51 9.82 7.84 87.90 0.69 10.51 16 28 O -0.57 -15.93 13.99 -3.04 -0.04 -15.97 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.51 7.90 -2.39 -0.02 0.49 16 32 H 0.05 0.98 7.08 -2.39 -0.02 0.96 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.04 0.95 7.06 -2.39 -0.02 0.93 16 35 H 0.07 0.42 7.21 -2.39 -0.02 0.40 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.11 0.46 7.12 -2.39 -0.02 0.45 16 39 H 0.08 0.64 7.89 -2.38 -0.02 0.62 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.08 7.93 -2.39 -0.02 1.06 16 42 H 0.41 5.69 8.49 -92.71 -0.79 4.90 16 43 H 0.41 11.25 6.18 -92.70 -0.57 10.68 16 44 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 47 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 51 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 52 H 0.26 13.25 8.31 -92.71 -0.77 12.47 16 53 H 0.10 1.53 7.75 -2.39 -0.02 1.51 16 54 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -70.11 414.62 1.77 -68.35 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.47 Total: 21.04 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 7.25 Total: 9.39 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -6.93 Total: -101.02 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.11 Total: -42.20 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.11 1.77 -68.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596624275.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.933 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds