Wall clock time and date at job start Sat Apr 11 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47010 * 119.99895 * 2 1 3 5 5 H 1.08996 * 109.49128 * 300.03016 * 4 2 1 6 6 C 1.53090 * 109.47814 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16292 * 182.41021 * 6 4 2 8 8 H 1.09007 * 109.54284 * 176.85091 * 7 6 4 9 9 N 1.46507 * 109.54042 * 297.02334 * 7 6 4 10 10 C 1.34773 * 119.99557 * 204.82132 * 9 7 6 11 11 O 1.21584 * 120.00419 * 354.85086 * 10 9 7 12 12 N 1.34781 * 119.99722 * 174.84332 * 10 9 7 13 13 C 1.47083 * 120.88183 * 184.71220 * 12 10 9 14 14 C 1.53692 * 108.27394 * 128.75629 * 13 12 10 15 15 N 1.46894 * 109.25968 * 54.08399 * 14 13 12 16 16 C 1.46901 * 111.00514 * 172.60221 * 15 14 13 17 17 C 1.50705 * 109.46707 * 59.46423 * 16 15 14 18 18 H 1.08001 * 119.99979 * 355.10984 * 17 16 15 19 19 C 1.37877 * 119.99925 * 175.10771 * 17 16 15 20 20 N 1.31514 * 119.99622 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00047 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46721 * 90.00094 * 21 19 17 23 23 H 1.48495 * 109.46863 * 210.00084 * 21 19 17 24 24 H 1.48499 * 109.47045 * 330.00101 * 21 19 17 25 25 C 1.46902 * 111.26997 * 296.75653 * 15 14 13 26 26 C 1.47074 * 120.87942 * 4.99349 * 12 10 9 27 27 C 1.53171 * 109.03728 * 56.98142 * 7 6 4 28 28 C 1.53090 * 109.16217 * 303.01826 * 27 7 6 29 29 O 1.42905 * 109.47825 * 60.05760 * 4 2 1 30 30 H 1.09003 * 109.47236 * 299.99758 * 1 2 3 31 31 H 1.08999 * 109.47571 * 59.99745 * 1 2 3 32 32 H 1.09004 * 109.47413 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46748 * 240.00264 * 2 1 3 34 34 H 1.08997 * 109.47310 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.46750 * 300.00118 * 3 2 1 36 36 H 1.08998 * 109.47233 * 59.99704 * 3 2 1 37 37 H 1.08999 * 109.52099 * 62.50239 * 6 4 2 38 38 H 1.09001 * 109.57810 * 302.34881 * 6 4 2 39 39 H 0.96994 * 120.00096 * 24.82105 * 9 7 6 40 40 H 1.08996 * 109.62885 * 248.52594 * 13 12 10 41 41 H 1.08999 * 109.62468 * 9.10580 * 13 12 10 42 42 H 1.08998 * 109.65142 * 294.07527 * 14 13 12 43 43 H 1.09001 * 109.44290 * 173.96162 * 14 13 12 44 44 H 1.08995 * 109.47503 * 179.45947 * 16 15 14 45 45 H 1.08991 * 109.47015 * 299.47135 * 16 15 14 46 46 H 0.97007 * 119.99676 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.48743 * 303.14228 * 25 15 14 48 48 H 1.08999 * 109.51619 * 183.07626 * 25 15 14 49 49 H 1.09000 * 109.63101 * 350.89400 * 26 12 10 50 50 H 1.08999 * 109.62911 * 111.47843 * 26 12 10 51 51 H 1.08998 * 109.52555 * 62.92607 * 27 7 6 52 52 H 1.09003 * 109.52290 * 183.11639 * 27 7 6 53 53 H 1.08995 * 109.48452 * 297.62897 * 28 27 7 54 54 H 1.09005 * 109.49220 * 177.59806 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6764 -0.2080 2.1394 6 6 3.5709 -0.7219 1.2491 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5497 2.4469 9 7 3.6422 -0.8171 3.6945 10 6 4.3358 -0.9834 4.8380 11 8 5.2624 -1.7695 4.8782 12 7 4.0022 -0.2781 5.9371 13 6 4.8079 -0.3670 7.1644 14 6 5.1535 1.0601 7.6184 15 7 3.9161 1.8418 7.7436 16 6 4.1822 3.1566 8.3422 17 6 5.1590 3.9130 7.4791 18 1 5.6041 3.4336 6.6198 19 6 5.4843 5.2171 7.7864 20 7 6.3363 5.8773 7.0329 21 14 4.7149 6.0462 9.2731 22 1 5.5681 5.8138 10.4660 23 1 4.6013 7.5054 9.0224 24 1 3.3639 5.4783 9.5125 25 6 3.2400 1.9807 6.4469 26 6 2.8195 0.5960 5.9429 27 6 3.4916 -2.9139 2.4374 28 6 1.9637 -2.8286 2.3916 29 8 1.5648 -2.0690 1.2488 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 3.9356 0.3043 1.2938 38 1 3.9358 -1.1988 0.3395 39 1 2.8575 -0.2471 3.6817 40 1 4.2361 -0.8734 7.9419 41 1 5.7248 -0.9202 6.9612 42 1 5.8078 1.5300 6.8841 43 1 5.6586 1.0215 8.5835 44 1 3.2508 3.7182 8.4146 45 1 4.6047 3.0237 9.3381 46 1 6.5655 6.7947 7.2493 47 1 3.9209 2.4378 5.7289 48 1 2.3571 2.6095 6.5621 49 1 2.4211 0.6799 4.9317 50 1 2.0602 0.1804 6.6053 51 1 3.8539 -3.4358 1.5517 52 1 3.7995 -3.4554 3.3319 53 1 1.5995 -2.3426 3.2967 54 1 1.5452 -3.8328 2.3247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601594078.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:10 Heat of formation + Delta-G solvation = -91.703138 kcal Electronic energy + Delta-G solvation = -31731.722625 eV Core-core repulsion = 27702.502482 eV Total energy + Delta-G solvation = -4029.220143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83814 -40.55978 -39.10609 -36.53126 -36.03745 -36.02157 -34.37361 -32.78252 -31.70404 -31.08988 -30.17479 -28.00825 -27.21695 -25.79011 -24.67407 -24.56520 -23.97389 -22.39991 -21.32562 -20.95709 -20.31818 -19.34372 -18.74752 -17.55191 -17.33435 -17.12929 -16.71077 -16.57208 -16.12304 -15.95139 -15.81469 -15.47864 -15.30710 -15.19015 -14.95776 -14.63096 -14.44150 -14.19716 -13.94910 -13.85633 -13.69177 -13.59659 -13.23961 -13.04971 -13.00983 -12.90074 -12.60435 -12.48305 -12.26035 -12.21593 -12.17453 -12.04898 -12.02473 -11.75473 -11.73195 -11.64259 -11.56937 -11.22699 -11.11827 -10.80566 -10.48887 -10.20636 -9.60909 -9.03085 -8.32406 -6.38800 1.37545 1.38084 1.49692 1.56688 2.08369 2.33489 2.75885 2.83117 3.02801 3.22912 3.56444 3.71426 3.84713 3.94697 3.97972 4.06645 4.07582 4.12944 4.16733 4.30586 4.34130 4.37996 4.40557 4.48484 4.56521 4.65428 4.72952 4.77637 4.79699 4.81558 4.84406 4.85862 4.95440 4.99067 5.02059 5.05544 5.06300 5.07567 5.09743 5.14063 5.17520 5.28191 5.42475 5.44235 5.47028 5.48899 5.52435 5.85526 6.06854 6.27974 6.28489 6.32905 6.68198 6.88126 7.28636 7.48312 8.83968 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.002955 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.245288 B = 9472.326365 C =10676.650732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.151 4.151 4 C 0.096 3.904 5 H 0.056 0.944 6 C -0.152 4.152 7 C 0.159 3.841 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.705 3.295 11 O -0.631 6.631 12 N -0.629 5.629 13 C 0.145 3.855 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.159 3.841 17 C -0.551 4.551 18 H 0.028 0.972 19 C 0.009 3.991 20 N -0.950 5.950 21 Si 0.952 3.048 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.238 1.238 25 C 0.048 3.952 26 C 0.126 3.874 27 C -0.159 4.159 28 C 0.067 3.933 29 O -0.383 6.383 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.402 0.598 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.005 0.995 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.265 0.735 47 H 0.009 0.991 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.063 0.937 53 H 0.047 0.953 54 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 -14.844 -11.580 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.208 4.208 4 C 0.038 3.962 5 H 0.074 0.926 6 C -0.190 4.190 7 C 0.054 3.946 8 H 0.087 0.913 9 N -0.390 5.390 10 C 0.407 3.593 11 O -0.512 6.512 12 N -0.365 5.365 13 C 0.022 3.978 14 C -0.076 4.076 15 N -0.246 5.246 16 C 0.032 3.968 17 C -0.590 4.590 18 H 0.046 0.954 19 C -0.188 4.188 20 N -0.590 5.590 21 Si 0.775 3.225 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.161 1.161 25 C -0.081 4.081 26 C 0.003 3.997 27 C -0.198 4.198 28 C -0.009 4.009 29 O -0.302 6.302 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.241 0.759 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.023 0.977 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.027 0.973 48 H 0.109 0.891 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.107 0.893 52 H 0.082 0.918 53 H 0.066 0.934 54 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.017 -15.572 -11.425 23.864 hybrid contribution 1.070 1.728 0.202 2.042 sum -12.947 -13.844 -11.223 22.028 Atomic orbital electron populations 1.21751 0.94242 1.01984 1.01974 1.21078 0.96798 0.95731 0.96615 1.21907 1.01400 0.94785 1.02725 1.22171 0.92028 0.83185 0.98812 0.92633 1.22546 0.97052 1.01862 0.97576 1.20865 0.99141 0.91952 0.82599 0.91320 1.45324 1.32610 1.53019 1.08021 1.15985 0.81882 0.80646 0.80824 1.90852 1.34180 1.41534 1.84650 1.47412 1.30160 1.46801 1.12176 1.21627 0.95804 0.95421 0.84977 1.22341 0.91744 0.93145 1.00345 1.62439 1.22652 1.16654 1.22809 1.20108 0.95423 0.86689 0.94609 1.21899 1.26248 0.98278 1.12527 0.95423 1.25974 0.95022 0.98059 0.99792 1.70100 1.35860 1.11793 1.41232 0.85638 0.80664 0.77272 0.78891 1.19445 1.21299 1.16138 1.22323 0.98763 0.96610 0.90437 1.21877 0.86999 0.88604 1.02213 1.22496 0.97420 0.96636 1.03242 1.22535 0.93167 0.96932 0.88290 1.87918 1.74679 1.23489 1.44104 0.92801 0.91940 0.92582 0.90324 0.92246 0.91265 0.92509 0.89731 0.88400 0.75913 0.89206 0.90249 0.97687 0.89979 0.94118 0.95050 0.92575 0.97271 0.89056 0.88681 0.88509 0.89305 0.91790 0.93423 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.05 71.98 0.65 -1.24 16 2 C -0.08 -1.16 2.72 -10.79 -0.03 -1.18 16 3 C -0.15 -2.00 8.84 71.98 0.64 -1.36 16 4 C 0.10 1.50 2.05 30.62 0.06 1.56 16 5 H 0.06 0.86 6.72 -2.39 -0.02 0.84 16 6 C -0.15 -2.53 4.64 30.68 0.14 -2.39 16 7 C 0.16 3.42 2.77 45.11 0.12 3.54 16 8 H 0.07 1.81 7.66 -2.38 -0.02 1.79 16 9 N -0.73 -17.24 4.32 -457.23 -1.98 -19.22 16 10 C 0.70 22.13 8.27 179.05 1.48 23.61 16 11 O -0.63 -24.34 15.52 -3.98 -0.06 -24.40 16 12 N -0.63 -18.88 3.00 -835.05 -2.51 -21.39 16 13 C 0.15 4.60 6.61 86.50 0.57 5.17 16 14 C 0.05 2.04 5.17 86.54 0.45 2.49 16 15 N -0.52 -19.86 4.83 -898.90 -4.34 -24.20 16 16 C 0.16 7.11 4.21 85.56 0.36 7.47 16 17 C -0.55 -30.39 8.32 25.60 0.21 -30.18 16 18 H 0.03 1.74 6.12 -2.91 -0.02 1.73 16 19 C 0.01 0.53 5.47 84.65 0.46 1.00 16 20 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 21 Si 0.95 42.40 27.57 68.60 1.89 44.29 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.24 -9.58 6.40 99.48 0.64 -8.94 16 25 C 0.05 1.62 5.25 86.38 0.45 2.08 16 26 C 0.13 3.13 6.59 86.35 0.57 3.70 16 27 C -0.16 -3.03 5.81 30.68 0.18 -2.85 16 28 C 0.07 1.11 6.68 72.01 0.48 1.59 16 29 O -0.38 -6.76 9.73 -148.98 -1.45 -8.21 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.81 6.49 -2.39 -0.02 0.79 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.44 6.57 -2.39 -0.02 1.42 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.40 7.82 4.57 -92.71 -0.42 7.40 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.08 2.68 7.09 -2.39 -0.02 2.67 16 42 H 0.00 0.22 6.62 -2.39 -0.02 0.21 16 43 H 0.08 3.01 8.11 -2.39 -0.02 3.00 16 44 H 0.04 1.76 6.78 -2.39 -0.02 1.75 16 45 H 0.03 1.38 7.81 -2.39 -0.02 1.37 16 46 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 47 H 0.01 0.38 7.11 -2.39 -0.02 0.36 16 48 H 0.09 2.82 8.06 -2.39 -0.02 2.80 16 49 H 0.10 1.82 5.63 -2.39 -0.01 1.81 16 50 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 53 H 0.05 0.80 7.75 -2.39 -0.02 0.78 16 54 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -71.03 400.63 -0.95 -71.98 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.39 Total: 26.45 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.81 Total: 13.01 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -8.53 Total: -123.12 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.51 Total: -32.61 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.89 Total: 44.29 kcal Total: -71.03 -0.95 -71.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601594078.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.725 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds