Wall clock time and date at job start Sat Apr 11 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 C 1.52999 * 109.46921 * 240.00503 * 2 1 3 5 5 N 1.46900 * 109.47002 * 320.89266 * 4 2 1 6 6 C 1.47024 * 110.99882 * 289.22330 * 5 4 2 7 7 C 1.53099 * 109.25294 * 177.60536 * 6 5 4 8 8 O 1.43012 * 109.25767 * 56.85550 * 7 6 5 9 9 C 1.43020 * 113.73887 * 301.32060 * 8 7 6 10 10 C 1.47017 * 111.00181 * 165.59334 * 5 4 2 11 11 C 1.50703 * 109.47396 * 120.00356 * 2 1 3 12 12 O 1.21277 * 119.99998 * 123.71721 * 11 2 1 13 13 N 1.34777 * 119.99790 * 303.98463 * 11 2 1 14 14 C 1.47083 * 120.88224 * 352.44919 * 13 11 2 15 15 C 1.53700 * 108.27462 * 128.75179 * 14 13 11 16 16 N 1.46894 * 109.25727 * 54.08368 * 15 14 13 17 17 C 1.46893 * 111.00266 * 172.60743 * 16 15 14 18 18 C 1.50701 * 109.47060 * 294.30069 * 17 16 15 19 19 H 1.08004 * 120.00114 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99962 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99996 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47479 * 89.99351 * 22 20 18 24 24 H 1.48497 * 109.47241 * 209.99635 * 22 20 18 25 25 H 1.48502 * 109.46925 * 329.99117 * 22 20 18 26 26 C 1.46905 * 111.26974 * 296.75555 * 16 15 14 27 27 C 1.47074 * 120.87893 * 172.72567 * 13 11 2 28 28 H 1.09004 * 109.46840 * 284.43952 * 1 2 3 29 29 H 1.08999 * 109.47487 * 44.44031 * 1 2 3 30 30 H 1.08999 * 109.46937 * 164.44215 * 1 2 3 31 31 H 1.09001 * 109.46865 * 185.99409 * 3 2 1 32 32 H 1.09001 * 109.47141 * 305.99516 * 3 2 1 33 33 H 1.08997 * 109.47260 * 65.99701 * 3 2 1 34 34 H 1.09001 * 109.47593 * 80.89383 * 4 2 1 35 35 H 1.09001 * 109.47185 * 200.89528 * 4 2 1 36 36 H 1.08991 * 109.50612 * 297.54167 * 6 5 4 37 37 H 1.09000 * 109.50366 * 57.67390 * 6 5 4 38 38 H 1.08991 * 109.51072 * 296.91487 * 7 6 5 39 39 H 1.09004 * 109.53568 * 176.80457 * 7 6 5 40 40 H 1.08996 * 109.50738 * 298.74266 * 9 8 7 41 41 H 1.08997 * 109.54458 * 178.62829 * 9 8 7 42 42 H 1.08999 * 109.50273 * 302.32633 * 10 5 4 43 43 H 1.08996 * 109.50529 * 62.40974 * 10 5 4 44 44 H 1.08998 * 109.62944 * 248.52082 * 14 13 11 45 45 H 1.09005 * 109.62809 * 9.10315 * 14 13 11 46 46 H 1.09004 * 109.64496 * 294.07892 * 15 14 13 47 47 H 1.09000 * 109.44001 * 173.96502 * 15 14 13 48 48 H 1.08997 * 109.47296 * 54.30040 * 17 16 15 49 49 H 1.08999 * 109.47567 * 174.30301 * 17 16 15 50 50 H 0.97001 * 120.00180 * 180.02562 * 21 20 18 51 51 H 1.08994 * 109.49282 * 303.14532 * 26 16 15 52 52 H 1.08998 * 109.49308 * 183.06030 * 26 16 15 53 53 H 1.09000 * 109.63085 * 350.89961 * 27 13 11 54 54 H 1.09004 * 109.62708 * 111.48086 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 1.1898 -1.8876 -1.5226 6 6 1.4035 -2.9417 -0.5202 7 6 0.4576 -4.1107 -0.8074 8 8 0.6776 -4.5790 -2.1407 9 6 0.4776 -3.5783 -3.1427 10 6 1.4237 -2.4038 -2.8792 11 6 2.0324 -0.7105 1.2304 12 8 2.7842 -1.6557 1.1203 13 7 1.6419 -0.2988 2.4529 14 6 0.8618 0.9369 2.6199 15 6 -0.3771 0.6136 3.4702 16 7 0.0482 -0.0258 4.7224 17 6 -1.0866 -0.1928 5.6401 18 6 -1.5867 1.1616 6.0723 19 1 -1.1095 2.0569 5.7019 20 6 -2.6541 1.2578 6.9397 21 7 -3.0908 2.4397 7.3165 22 14 -3.4800 -0.2906 7.5798 23 1 -2.8170 -0.7219 8.8367 24 1 -4.9140 -0.0125 7.8467 25 1 -3.3655 -1.3684 6.5646 26 6 0.7114 -1.3113 4.4660 27 6 1.9897 -1.0701 3.6559 28 1 -0.3633 0.2563 0.9952 29 1 -0.3634 0.7337 -0.7195 30 1 -0.3633 -0.9900 -0.2756 31 1 3.1247 1.4443 -0.1073 32 1 1.5916 1.9864 -0.8315 33 1 1.7669 1.9244 0.9388 34 1 2.0077 -0.0407 -2.1003 35 1 3.0662 -1.0499 -1.0856 36 1 2.4358 -3.2879 -0.5705 37 1 1.2001 -2.5447 0.4744 38 1 -0.5749 -3.7773 -0.7045 39 1 0.6514 -4.9183 -0.1014 40 1 -0.5543 -3.2292 -3.1077 41 1 0.6861 -4.0000 -4.1259 42 1 1.2351 -1.6142 -3.6065 43 1 2.4566 -2.7407 -2.9673 44 1 1.4696 1.6883 3.1239 45 1 0.5506 1.3083 1.6435 46 1 -1.0323 -0.0624 2.9208 47 1 -0.9127 1.5357 3.6961 48 1 -1.8876 -0.7310 5.1333 49 1 -0.7661 -0.7579 6.5153 50 1 -3.8415 2.5074 7.9270 51 1 0.0410 -1.9604 3.9029 52 1 0.9656 -1.7849 5.4142 53 1 2.4245 -2.0262 3.3649 54 1 2.7038 -0.5078 4.2576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602198490.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:17 Heat of formation + Delta-G solvation = -54.024738 kcal Electronic energy + Delta-G solvation = -32495.249049 eV Core-core repulsion = 28467.662764 eV Total energy + Delta-G solvation = -4027.586285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16309 -40.37992 -39.14104 -37.41516 -36.33738 -35.13418 -34.25385 -32.13596 -32.06649 -30.48497 -29.07359 -28.23415 -27.53869 -25.55119 -25.01652 -24.65480 -24.05383 -22.76131 -21.55645 -21.10301 -19.58539 -18.93291 -17.85216 -17.66784 -17.27628 -17.10312 -16.56966 -16.49461 -16.18815 -16.06787 -15.99988 -15.71840 -15.59037 -15.31881 -15.13757 -14.96640 -14.47484 -14.30670 -14.23650 -13.59107 -13.44567 -13.33532 -13.24725 -13.07011 -12.98609 -12.80102 -12.74450 -12.47101 -12.37352 -12.33110 -12.23846 -12.06081 -12.01202 -12.00041 -11.84673 -11.51945 -11.40276 -11.32239 -10.76966 -10.63067 -10.54053 -9.71900 -9.37014 -9.05560 -8.27240 -6.30046 1.35483 1.36797 1.46234 1.56979 1.95312 2.34569 2.73715 2.94504 3.05226 3.14757 3.33992 3.70932 3.91530 3.95620 3.99767 4.01500 4.09050 4.12532 4.18685 4.18983 4.22847 4.27014 4.35354 4.39416 4.50873 4.58560 4.60114 4.68748 4.70079 4.71364 4.71860 4.80521 4.83191 4.85800 4.91625 4.92950 4.94729 5.00410 5.02654 5.05227 5.10491 5.13625 5.28655 5.44781 5.50945 5.54133 5.90170 5.93194 6.00026 6.15226 6.29294 6.41883 6.60619 6.76213 7.10370 7.33628 8.88664 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002988 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.141782 B = 9369.874770 C = 9974.307519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.154 4.154 4 C 0.078 3.922 5 N -0.531 5.531 6 C 0.032 3.968 7 C 0.062 3.938 8 O -0.407 6.407 9 C 0.060 3.940 10 C 0.018 3.982 11 C 0.520 3.480 12 O -0.572 6.572 13 N -0.606 5.606 14 C 0.102 3.898 15 C 0.051 3.949 16 N -0.539 5.539 17 C 0.172 3.828 18 C -0.512 4.512 19 H 0.046 0.954 20 C 0.012 3.988 21 N -0.944 5.944 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.255 1.255 26 C 0.043 3.957 27 C 0.124 3.876 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.030 0.970 36 H 0.023 0.977 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.133 0.867 46 H 0.027 0.973 47 H 0.077 0.923 48 H -0.015 1.015 49 H 0.028 0.972 50 H 0.266 0.734 51 H 0.025 0.975 52 H 0.088 0.912 53 H 0.090 0.910 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.912 -7.230 -21.861 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.211 4.211 4 C -0.050 4.050 5 N -0.255 5.255 6 C -0.096 4.096 7 C -0.015 4.015 8 O -0.326 6.326 9 C -0.017 4.017 10 C -0.110 4.110 11 C 0.310 3.690 12 O -0.453 6.453 13 N -0.338 5.338 14 C -0.020 4.020 15 C -0.078 4.078 16 N -0.264 5.264 17 C 0.045 3.955 18 C -0.551 4.551 19 H 0.064 0.936 20 C -0.185 4.185 21 N -0.585 5.585 22 Si 0.765 3.235 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.179 1.179 26 C -0.086 4.086 27 C 0.002 3.998 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.151 0.849 46 H 0.045 0.955 47 H 0.095 0.905 48 H 0.003 0.997 49 H 0.046 0.954 50 H 0.075 0.925 51 H 0.043 0.957 52 H 0.107 0.893 53 H 0.108 0.892 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.085 -7.381 -21.600 24.568 hybrid contribution -0.289 -0.912 0.789 1.240 sum 8.797 -8.293 -20.811 24.068 Atomic orbital electron populations 1.22149 0.91140 1.04510 1.02750 1.20802 0.98560 0.97016 0.91281 1.22235 1.01870 0.92150 1.04849 1.21994 0.93985 0.92110 0.96929 1.62368 1.54135 1.06618 1.02400 1.22873 0.97375 0.92371 0.97014 1.22756 0.98472 0.96393 0.83881 1.87942 1.91051 1.37689 1.15911 1.22851 0.98875 0.87957 0.91994 1.22851 0.98264 0.98944 0.90957 1.21085 0.79579 0.83323 0.84989 1.90665 1.37352 1.30553 1.86709 1.48205 1.53999 1.25514 1.06120 1.22653 0.91647 0.85806 1.01892 1.22455 0.96122 0.99816 0.89380 1.61807 1.29177 1.22287 1.13088 1.19928 0.87935 0.95713 0.91898 1.21213 1.14215 0.92659 1.26989 0.93550 1.25743 0.97470 0.98969 0.96350 1.70027 1.27615 1.25250 1.35619 0.85812 0.77861 0.80273 0.79555 1.19223 1.20875 1.17875 1.22482 0.95421 0.90690 0.99994 1.21608 0.96011 0.97052 0.85168 0.92293 0.89517 0.91149 0.92152 0.88548 0.90617 0.87531 0.95128 0.95846 0.90215 0.92299 0.88585 0.91833 0.86572 0.87200 0.95084 0.90528 0.84922 0.95450 0.90476 0.99718 0.95412 0.92458 0.95690 0.89342 0.89180 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 7.80 71.98 0.56 -2.21 16 2 C -0.07 -1.40 0.50 -52.93 -0.03 -1.43 16 3 C -0.15 -2.26 7.99 71.98 0.58 -1.68 16 4 C 0.08 1.45 4.33 86.30 0.37 1.83 16 5 N -0.53 -10.53 3.05 -895.20 -2.73 -13.26 16 6 C 0.03 0.79 3.63 86.31 0.31 1.10 16 7 C 0.06 1.39 7.01 72.02 0.50 1.90 16 8 O -0.41 -9.35 10.83 -148.98 -1.61 -10.97 16 9 C 0.06 0.97 7.01 72.01 0.50 1.47 16 10 C 0.02 0.28 5.63 86.31 0.49 0.77 16 11 C 0.52 13.48 4.94 87.66 0.43 13.92 16 12 O -0.57 -17.87 11.84 -3.02 -0.04 -17.90 16 13 N -0.61 -16.15 2.97 -817.03 -2.43 -18.57 16 14 C 0.10 2.62 4.18 86.50 0.36 2.98 16 15 C 0.05 1.73 5.17 86.54 0.45 2.18 16 16 N -0.54 -20.75 4.62 -898.89 -4.15 -24.90 16 17 C 0.17 7.89 3.79 85.56 0.32 8.21 16 18 C -0.51 -28.18 8.96 25.60 0.23 -27.95 16 19 H 0.05 2.81 7.37 -2.91 -0.02 2.79 16 20 C 0.01 0.70 5.47 84.65 0.46 1.16 16 21 N -0.94 -57.15 13.96 21.45 0.30 -56.85 16 22 Si 0.94 42.90 27.47 68.60 1.88 44.79 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 C 0.04 1.36 5.62 86.38 0.49 1.85 16 27 C 0.12 3.49 6.57 86.35 0.57 4.06 16 28 H 0.06 1.25 3.87 -2.39 -0.01 1.24 16 29 H 0.09 1.25 7.97 -2.39 -0.02 1.23 16 30 H 0.07 1.52 6.09 -2.39 -0.01 1.50 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.96 8.04 -2.39 -0.02 0.94 16 33 H 0.08 1.17 4.81 -2.39 -0.01 1.16 16 34 H 0.11 1.41 7.78 -2.39 -0.02 1.40 16 35 H 0.03 0.72 7.17 -2.39 -0.02 0.70 16 36 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 37 H 0.08 2.25 4.57 -2.39 -0.01 2.24 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.20 8.05 -2.39 -0.02 1.18 16 43 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.13 2.70 2.91 -2.38 -0.01 2.69 16 46 H 0.03 0.93 7.40 -2.39 -0.02 0.91 16 47 H 0.08 3.01 6.67 -2.39 -0.02 2.99 16 48 H -0.01 -0.69 7.18 -2.39 -0.02 -0.71 16 49 H 0.03 1.26 7.40 -2.39 -0.02 1.24 16 50 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 51 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 53 H 0.09 2.50 7.12 -2.39 -0.02 2.48 16 54 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -68.12 385.81 -1.34 -69.46 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.83 Total: 20.05 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.60 Total: 8.16 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -9.01 Total: -113.58 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.65 Total: -28.87 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Total: -68.12 -1.34 -69.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602198490.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.437 kcal (2) G-P(sol) polarization free energy of solvation -68.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds