Wall clock time and date at job start Sat Apr 11 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46681 * 2 1 4 4 C 1.52998 * 109.47059 * 239.99970 * 2 1 3 5 5 H 1.08999 * 109.47061 * 60.00283 * 4 2 1 6 6 O 1.42894 * 109.47477 * 299.99610 * 4 2 1 7 7 C 1.53010 * 109.46750 * 179.97438 * 4 2 1 8 8 C 1.53000 * 115.54976 * 34.41965 * 7 4 2 9 9 N 1.46500 * 109.47035 * 179.97438 * 8 7 4 10 10 C 1.34779 * 119.99752 * 180.02562 * 9 8 7 11 11 O 1.21579 * 120.00151 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99390 * 179.97438 * 10 9 8 13 13 C 1.46510 * 119.99432 * 179.97438 * 12 10 9 14 14 C 1.53043 * 109.46092 * 275.02569 * 13 12 10 15 15 C 1.53195 * 109.30958 * 178.59948 * 14 13 12 16 16 N 1.46924 * 108.76250 * 54.66426 * 15 14 13 17 17 C 1.36933 * 120.63247 * 126.36130 * 16 15 14 18 18 H 1.07994 * 119.99950 * 331.84864 * 17 16 15 19 19 C 1.38817 * 120.00063 * 151.85510 * 17 16 15 20 20 N 1.31621 * 119.99991 * 343.07086 * 19 17 16 21 21 Si 1.86799 * 119.99827 * 163.06798 * 19 17 16 22 22 H 1.48505 * 109.46738 * 60.00441 * 21 19 17 23 23 H 1.48503 * 109.46844 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47612 * 300.00134 * 21 19 17 25 25 C 1.46934 * 118.73811 * 306.37693 * 16 15 14 26 26 C 1.53037 * 109.45675 * 154.97688 * 13 12 10 27 27 C 1.52999 * 117.49781 * 248.74551 * 7 4 2 28 28 C 1.52998 * 117.49529 * 180.08493 * 7 4 2 29 29 H 1.09007 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47466 * 60.00360 * 1 2 3 31 31 H 1.09001 * 109.47430 * 299.99607 * 1 2 3 32 32 H 1.08999 * 109.46953 * 120.00187 * 2 1 3 33 33 H 1.08992 * 109.46931 * 60.00241 * 3 2 1 34 34 H 1.09008 * 109.46716 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47020 * 299.99351 * 3 2 1 36 36 H 0.96699 * 114.00288 * 300.00484 * 6 4 2 37 37 H 1.09000 * 109.46845 * 300.00304 * 8 7 4 38 38 H 1.08998 * 109.47099 * 59.99489 * 8 7 4 39 39 H 0.96996 * 119.99661 * 359.97438 * 9 8 7 40 40 H 0.96997 * 120.00663 * 0.02562 * 12 10 9 41 41 H 1.08995 * 109.45971 * 35.00482 * 13 12 10 42 42 H 1.08997 * 109.49805 * 298.57122 * 14 13 12 43 43 H 1.09002 * 109.49526 * 58.66546 * 14 13 12 44 44 H 1.08992 * 109.59712 * 294.87140 * 15 14 13 45 45 H 1.08999 * 109.69814 * 174.50696 * 15 14 13 46 46 H 0.96993 * 119.99876 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58289 * 293.82844 * 25 16 15 48 48 H 1.08992 * 109.70394 * 173.46932 * 25 16 15 49 49 H 1.08998 * 109.49689 * 301.33759 * 26 13 12 50 50 H 1.09003 * 109.50012 * 61.43434 * 26 13 12 51 51 H 1.08999 * 117.50142 * 0.02562 * 27 7 4 52 52 H 1.08998 * 117.49742 * 145.02192 * 27 7 4 53 53 H 1.09000 * 117.49947 * 214.97694 * 28 7 4 54 54 H 1.08999 * 117.50080 * 359.97438 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 8 1.5638 -2.0685 -1.2492 7 6 3.5701 -0.7206 -1.2495 8 6 4.2302 -0.8266 0.1267 9 7 5.6870 -0.8147 -0.0283 10 6 6.4808 -0.8988 1.0576 11 8 5.9881 -0.9840 2.1658 12 7 7.8210 -0.8883 0.9149 13 6 8.6840 -0.9792 2.0954 14 6 8.8827 0.4168 2.6904 15 6 9.7567 0.3133 3.9443 16 7 11.0058 -0.3765 3.5941 17 6 12.2193 0.1911 3.8775 18 1 12.3149 1.2658 3.9245 19 6 13.3266 -0.6148 4.1040 20 7 13.1659 -1.8922 4.3776 21 14 15.0447 0.1136 4.0206 22 1 15.1741 1.1935 5.0317 23 1 16.0461 -0.9474 4.2978 24 1 15.2798 0.6735 2.6655 25 6 10.9281 -1.6868 2.9338 26 6 10.0406 -1.5609 1.6915 27 6 4.2760 0.1288 -2.3082 28 6 4.2765 -1.3974 -2.4258 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.8491 -2.5866 -0.4842 37 1 3.9230 0.0184 0.7430 38 1 3.9237 -1.7562 0.6061 39 1 6.0800 -0.7470 -0.9124 40 1 8.2141 -0.8199 0.0309 41 1 8.2174 -1.6272 2.8373 42 1 9.3719 1.0583 1.9575 43 1 7.9141 0.8402 2.9562 44 1 9.2292 -0.2530 4.7118 45 1 9.9831 1.3120 4.3178 46 1 13.9396 -2.4554 4.5355 47 1 10.4961 -2.4161 3.6191 48 1 11.9265 -2.0093 2.6386 49 1 9.8964 -2.5453 1.2463 50 1 10.5189 -0.9005 0.9682 51 1 3.6504 0.6876 -3.0043 52 1 5.2109 0.6120 -2.0244 53 1 5.2118 -1.9176 -2.2194 54 1 3.6513 -1.8434 -3.1993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611417325.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:35 Heat of formation + Delta-G solvation = -66.741962 kcal Electronic energy + Delta-G solvation = -30626.421299 eV Core-core repulsion = 26598.283554 eV Total energy + Delta-G solvation = -4028.137745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52680 -40.44962 -39.03179 -37.26963 -35.97282 -35.08951 -34.73973 -33.76455 -31.78664 -31.14187 -28.95724 -27.67041 -27.13558 -26.32268 -23.97157 -23.62588 -23.29977 -21.91956 -21.67938 -21.06129 -20.47348 -19.50164 -18.64231 -17.54088 -17.34746 -16.86848 -16.63468 -16.49683 -16.37113 -15.74291 -15.43778 -15.35811 -15.27795 -15.16819 -14.75433 -14.47863 -14.29095 -14.03424 -14.00704 -13.76749 -13.52958 -13.20604 -13.01770 -12.99350 -12.89831 -12.57385 -12.54063 -12.38213 -12.24017 -12.20466 -12.03156 -11.87114 -11.83351 -11.57711 -11.53334 -11.49329 -11.38964 -11.21907 -10.99491 -10.57717 -10.54746 -10.25222 -9.70838 -8.70641 -7.87369 -5.33184 1.49214 1.50847 1.58171 1.68688 2.17214 2.52483 2.68983 3.23703 3.31709 3.41777 3.60260 3.66962 3.67843 3.84447 3.90795 3.97261 4.05455 4.07286 4.13020 4.34945 4.38579 4.46644 4.58979 4.65588 4.70438 4.74638 4.77579 4.79818 4.81963 4.83623 4.87230 4.97577 5.02574 5.03589 5.05091 5.07095 5.12298 5.16384 5.23129 5.26490 5.30070 5.43141 5.44889 5.47160 5.51645 5.60458 5.64814 5.70483 6.01060 6.39335 6.78883 7.10318 7.14738 7.60549 7.84209 8.37434 9.19659 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027259 B = 0.001985 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.926828 B =14102.649473 C =14374.808172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C -0.148 4.148 4 C 0.162 3.838 5 H 0.106 0.894 6 O -0.568 6.568 7 C -0.174 4.174 8 C 0.174 3.826 9 N -0.733 5.733 10 C 0.700 3.300 11 O -0.635 6.635 12 N -0.726 5.726 13 C 0.182 3.818 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.067 0.933 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.178 3.822 26 C -0.127 4.127 27 C -0.159 4.159 28 C -0.159 4.159 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.384 0.616 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.057 0.943 46 H 0.251 0.749 47 H -0.006 1.006 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.111 0.889 52 H 0.100 0.900 53 H 0.097 0.903 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.989 3.593 -18.053 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.205 4.205 4 C 0.103 3.897 5 H 0.124 0.876 6 O -0.375 6.375 7 C -0.175 4.175 8 C 0.050 3.950 9 N -0.391 5.391 10 C 0.399 3.601 11 O -0.516 6.516 12 N -0.381 5.381 13 C 0.076 3.924 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.052 3.948 26 C -0.167 4.167 27 C -0.196 4.196 28 C -0.196 4.196 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.246 0.754 40 H 0.245 0.755 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.129 0.871 52 H 0.118 0.882 53 H 0.116 0.884 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.602 3.596 -17.567 29.642 hybrid contribution 1.665 -0.068 0.422 1.719 sum -21.937 3.528 -17.145 28.065 Atomic orbital electron populations 1.21733 0.94152 1.02058 1.01850 1.21815 0.96982 0.97424 0.98394 1.21857 1.01254 0.95088 1.02277 1.21372 0.87354 0.82647 0.98355 0.87648 1.86538 1.76672 1.23795 1.50450 1.22363 0.95938 1.08949 0.90237 1.20692 0.77452 1.01538 0.95351 1.45068 1.06470 1.79599 1.07986 1.16127 0.81812 0.77597 0.84531 1.90902 1.75076 1.59521 1.26114 1.45128 1.03664 1.78696 1.10618 1.20477 0.89295 0.96248 0.86331 1.22175 0.98762 0.96997 0.98356 1.20964 0.86851 0.96122 0.94228 1.44345 1.01192 1.19998 1.67704 1.19480 0.86625 0.91381 1.41913 0.91493 1.25838 1.02294 0.96592 0.99876 1.70179 1.29788 1.06504 1.51676 0.85308 0.79492 0.77109 0.78315 1.20316 1.22096 1.20091 1.20568 0.98048 0.85849 0.90332 1.22253 0.94088 1.00946 0.99406 1.23185 1.02522 0.93769 1.00119 1.23031 1.02098 0.95404 0.99087 0.92470 0.92367 0.92634 0.91405 0.92789 0.92454 0.91614 0.76732 0.91298 0.92570 0.75438 0.75528 0.92705 0.91549 0.92423 0.97593 0.92426 0.94003 0.98808 0.91785 0.90555 0.91081 0.87071 0.88150 0.88435 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.05 71.98 0.65 -0.98 16 2 C -0.13 -1.54 2.14 -10.79 -0.02 -1.56 16 3 C -0.15 -1.78 8.60 71.98 0.62 -1.16 16 4 C 0.16 1.86 2.66 30.60 0.08 1.94 16 5 H 0.11 1.14 7.90 -2.39 -0.02 1.12 16 6 O -0.57 -7.66 12.57 -148.98 -1.87 -9.54 16 7 C -0.17 -2.01 1.22 -52.18 -0.06 -2.08 16 8 C 0.17 2.99 4.46 86.38 0.39 3.38 16 9 N -0.73 -13.70 5.00 -478.54 -2.39 -16.09 16 10 C 0.70 19.63 8.53 179.05 1.53 21.16 16 11 O -0.63 -24.03 16.00 -3.96 -0.06 -24.10 16 12 N -0.73 -18.89 5.08 -457.68 -2.33 -21.21 16 13 C 0.18 6.21 2.42 45.02 0.11 6.32 16 14 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 15 C 0.14 6.33 6.52 86.36 0.56 6.90 16 16 N -0.61 -30.87 2.99 -699.10 -2.09 -32.96 16 17 C -0.26 -14.50 9.58 84.04 0.81 -13.70 16 18 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 19 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 20 N -0.94 -55.22 11.19 21.65 0.24 -54.97 16 21 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 C 0.18 8.53 5.30 86.36 0.46 8.99 16 26 C -0.13 -4.50 5.55 30.67 0.17 -4.33 16 27 C -0.16 -1.44 9.40 30.62 0.29 -1.16 16 28 C -0.16 -1.64 9.38 30.62 0.29 -1.35 16 29 H 0.06 0.71 7.68 -2.38 -0.02 0.69 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.96 6.97 -2.39 -0.02 0.94 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.78 5.63 -2.38 -0.01 0.77 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.38 3.73 9.05 -74.06 -0.67 3.06 16 37 H 0.07 1.36 5.32 -2.39 -0.01 1.35 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.41 5.32 5.59 -92.71 -0.52 4.80 16 40 H 0.41 7.79 8.62 -92.71 -0.80 6.99 16 41 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 46 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 47 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.06 3.41 6.06 -2.39 -0.01 3.40 16 49 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 51 H 0.11 0.79 8.05 -2.39 -0.02 0.77 16 52 H 0.10 0.90 7.01 -2.39 -0.02 0.88 16 53 H 0.10 1.00 7.01 -2.39 -0.02 0.98 16 54 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.40 413.41 -1.10 -71.51 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -1.08 Total: 25.18 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.45 Total: 15.73 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -6.57 Total: -125.24 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.94 Total: -33.63 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.40 -1.10 -71.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611417325.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.765 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds