Wall clock time and date at job start Sat Apr 11 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47180 * 120.00264 * 2 1 3 5 5 H 1.09002 * 109.47231 * 295.00741 * 4 2 1 6 6 O 1.42902 * 109.47216 * 55.00514 * 4 2 1 7 7 C 1.53000 * 109.47124 * 175.00949 * 4 2 1 8 8 C 1.52999 * 115.54887 * 304.78635 * 7 4 2 9 9 N 1.46495 * 109.47085 * 181.33937 * 8 7 4 10 10 C 1.34780 * 120.00159 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99776 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00183 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00145 * 179.97438 * 12 10 9 14 14 C 1.53354 * 109.41921 * 275.13000 * 13 12 10 15 15 C 1.53185 * 109.14846 * 178.67223 * 14 13 12 16 16 N 1.46925 * 108.89623 * 54.57794 * 15 14 13 17 17 C 1.36932 * 120.63322 * 126.29218 * 16 15 14 18 18 H 1.08002 * 120.00278 * 332.09305 * 17 16 15 19 19 C 1.38819 * 120.00113 * 152.09123 * 17 16 15 20 20 N 1.31619 * 119.99611 * 342.77679 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 162.77575 * 19 17 16 22 22 H 1.48499 * 109.47251 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47058 * 119.99837 * 21 19 17 24 24 H 1.48497 * 109.46891 * 239.99720 * 21 19 17 25 25 C 1.46928 * 118.73617 * 306.32576 * 16 15 14 26 26 C 1.53033 * 109.46082 * 154.99908 * 13 12 10 27 27 C 1.53001 * 117.49836 * 90.46001 * 7 4 2 28 28 C 1.53000 * 117.49625 * 159.12111 * 7 4 2 29 29 H 1.09001 * 109.47201 * 181.94756 * 1 2 3 30 30 H 1.09000 * 109.47015 * 301.94252 * 1 2 3 31 31 H 1.08998 * 109.47413 * 61.94279 * 1 2 3 32 32 H 1.09004 * 109.46853 * 240.00031 * 2 1 3 33 33 H 1.08999 * 109.46792 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47350 * 300.00175 * 3 2 1 35 35 H 1.09004 * 109.47271 * 60.00287 * 3 2 1 36 36 H 0.96697 * 113.99680 * 60.00560 * 6 4 2 37 37 H 1.09001 * 109.46721 * 61.34177 * 8 7 4 38 38 H 1.08995 * 109.47228 * 301.33773 * 8 7 4 39 39 H 0.97001 * 120.00009 * 0.02562 * 9 8 7 40 40 H 0.96998 * 119.99493 * 0.02562 * 12 10 9 41 41 H 1.09005 * 109.45732 * 35.02339 * 13 12 10 42 42 H 1.09002 * 109.68558 * 58.70453 * 14 13 12 43 43 H 1.09000 * 109.47266 * 298.51010 * 14 13 12 44 44 H 1.08999 * 109.58968 * 294.71722 * 15 14 13 45 45 H 1.09005 * 109.58463 * 174.43471 * 15 14 13 46 46 H 0.96997 * 120.00016 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.58673 * 173.39312 * 25 16 15 48 48 H 1.09009 * 109.58229 * 293.66963 * 25 16 15 49 49 H 1.09004 * 109.49705 * 61.43912 * 26 13 12 50 50 H 1.09000 * 109.50182 * 301.34253 * 26 13 12 51 51 H 1.09003 * 117.49605 * 214.99880 * 27 7 4 52 52 H 1.09000 * 117.50012 * 0.02562 * 27 7 4 53 53 H 1.08997 * 117.50541 * 359.97143 * 28 7 4 54 54 H 1.09010 * 117.49736 * 144.99921 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7516 -0.1585 2.1369 6 8 1.4703 -2.0305 1.3093 7 6 3.5649 -0.8309 1.1880 8 6 4.1286 -1.4987 -0.0678 9 7 5.5891 -1.5621 0.0266 10 6 6.3058 -2.1134 -0.9730 11 8 5.7400 -2.5585 -1.9528 12 7 7.6495 -2.1712 -0.8864 13 6 8.4284 -2.7710 -1.9726 14 6 8.4936 -4.2903 -1.7746 15 6 9.2809 -4.9143 -2.9311 16 7 10.5929 -4.2591 -3.0218 17 6 11.7447 -4.9995 -3.0114 18 1 11.7682 -5.9547 -2.5078 19 6 12.8822 -4.5225 -3.6482 20 7 12.7834 -3.5533 -4.5333 21 14 14.5532 -5.2559 -3.2489 22 1 14.3942 -6.3237 -2.2292 23 1 15.1475 -5.8335 -4.4812 24 1 15.4461 -4.1940 -2.7195 25 6 10.6454 -2.7943 -3.1231 26 6 9.8445 -2.1908 -1.9651 27 6 4.3803 0.3039 1.8113 28 6 4.3101 -1.0591 2.5046 29 1 -0.3634 -1.0271 0.0349 30 1 -0.3633 0.5437 0.8721 31 1 -0.3634 0.4833 -0.9069 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6861 -2.5885 0.5496 37 1 3.8461 -0.9181 -0.9460 38 1 3.7260 -2.5079 -0.1545 39 1 6.0405 -1.2073 0.8085 40 1 8.1008 -1.8164 -0.1045 41 1 7.9504 -2.5500 -2.9270 42 1 7.4845 -4.7020 -1.7575 43 1 8.9939 -4.5128 -0.8321 44 1 8.7356 -4.7708 -3.8638 45 1 9.4167 -5.9802 -2.7474 46 1 13.5781 -3.2202 -4.9785 47 1 11.6814 -2.4608 -3.0637 48 1 10.2136 -2.4780 -4.0727 49 1 10.3319 -2.4330 -1.0206 50 1 9.7948 -1.1082 -2.0822 51 1 5.3184 0.5745 1.3267 52 1 3.8304 1.1282 2.2653 53 1 3.7142 -1.1307 3.4144 54 1 5.2021 -1.6851 2.4761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611417326.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:37 Heat of formation + Delta-G solvation = -69.069317 kcal Electronic energy + Delta-G solvation = -30544.457409 eV Core-core repulsion = 26516.218742 eV Total energy + Delta-G solvation = -4028.238667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50751 -40.43762 -39.03053 -37.30424 -35.97423 -35.05933 -34.70038 -33.77037 -31.79050 -31.13928 -28.77486 -27.88307 -27.12557 -26.34067 -23.97732 -23.62832 -23.29526 -21.92682 -21.63820 -21.06252 -20.48271 -19.51787 -18.65022 -17.55319 -17.41870 -16.88020 -16.62612 -16.44037 -16.34356 -15.72164 -15.40790 -15.35407 -15.26166 -15.06341 -14.75201 -14.47281 -14.38254 -14.06213 -14.01149 -13.92277 -13.50973 -13.20316 -13.02482 -12.99959 -12.84443 -12.62515 -12.51566 -12.39975 -12.27389 -12.22150 -11.99585 -11.86846 -11.84150 -11.56093 -11.55804 -11.52548 -11.41001 -11.22271 -10.93868 -10.56641 -10.53441 -10.25166 -9.71629 -8.71295 -7.87938 -5.33208 1.47556 1.49595 1.60398 1.67774 2.16712 2.51996 2.68876 3.22801 3.30915 3.46006 3.57502 3.65918 3.66864 3.84666 3.90582 3.96815 4.05793 4.07072 4.13189 4.34743 4.39905 4.46608 4.58299 4.65318 4.68111 4.75396 4.77513 4.81177 4.81819 4.85096 4.86865 4.97907 5.02184 5.04637 5.06193 5.07004 5.11135 5.16026 5.22094 5.26768 5.29945 5.44255 5.45399 5.47404 5.50666 5.60257 5.64989 5.70545 6.00513 6.39098 6.75667 7.09805 7.14451 7.60042 7.83942 8.36963 9.19431 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.001937 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.016229 B =14454.216401 C =14509.857090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.145 4.145 4 C 0.161 3.839 5 H 0.106 0.894 6 O -0.570 6.570 7 C -0.173 4.173 8 C 0.177 3.823 9 N -0.732 5.732 10 C 0.700 3.300 11 O -0.635 6.635 12 N -0.726 5.726 13 C 0.182 3.818 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.067 0.933 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.178 3.822 26 C -0.127 4.127 27 C -0.156 4.156 28 C -0.164 4.164 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.383 0.617 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.006 0.994 45 H 0.057 0.943 46 H 0.251 0.749 47 H 0.064 0.936 48 H -0.006 1.006 49 H 0.071 0.929 50 H 0.077 0.923 51 H 0.101 0.899 52 H 0.113 0.887 53 H 0.104 0.896 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.552 11.626 17.051 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.203 4.203 4 C 0.102 3.898 5 H 0.124 0.876 6 O -0.376 6.376 7 C -0.174 4.174 8 C 0.053 3.947 9 N -0.390 5.390 10 C 0.399 3.601 11 O -0.516 6.516 12 N -0.381 5.381 13 C 0.076 3.924 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.052 3.948 26 C -0.166 4.166 27 C -0.193 4.193 28 C -0.201 4.201 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.246 0.754 40 H 0.245 0.755 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.024 0.976 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.012 0.988 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.119 0.881 52 H 0.131 0.869 53 H 0.122 0.878 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.193 11.508 16.644 30.033 hybrid contribution 1.619 -0.349 -0.440 1.714 sum -20.574 11.159 16.204 28.467 Atomic orbital electron populations 1.21739 0.94344 1.02049 1.01776 1.21808 0.96783 0.97739 0.98293 1.21814 1.01539 0.94675 1.02226 1.21394 0.86522 0.83489 0.98400 0.87646 1.86543 1.75914 1.25621 1.49548 1.22323 0.95752 1.05363 0.93979 1.20476 0.77995 0.99838 0.96408 1.45022 1.07216 1.65135 1.21639 1.16130 0.82015 0.78799 0.83116 1.90905 1.71086 1.55499 1.34123 1.45123 1.04219 1.64879 1.23865 1.20541 0.90595 0.92128 0.89093 1.22232 0.99102 0.95529 0.99461 1.20961 0.86045 0.96199 0.94990 1.44356 1.01111 1.02074 1.85697 1.19549 0.89185 1.03498 1.26930 0.91491 1.25825 1.02375 1.00084 0.96363 1.70192 1.28557 1.31958 1.27464 0.85185 0.79926 0.77851 0.77325 1.19090 1.22183 1.21362 1.20578 0.98778 0.82745 0.92749 1.22243 0.93734 0.99897 1.00767 1.23170 1.01597 0.92255 1.02318 1.23112 1.02271 0.99535 0.95216 0.92590 0.92435 0.92598 0.91504 0.92061 0.92751 0.91724 0.76866 0.91955 0.92308 0.75385 0.75517 0.92676 0.92400 0.91586 0.97558 0.92481 0.94010 0.91782 0.98758 0.91065 0.90483 0.88099 0.86874 0.87792 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.03 71.98 0.65 -0.98 16 2 C -0.13 -1.47 2.44 -10.80 -0.03 -1.49 16 3 C -0.15 -1.48 8.77 71.98 0.63 -0.84 16 4 C 0.16 1.87 2.46 30.59 0.08 1.94 16 5 H 0.11 1.14 8.09 -2.39 -0.02 1.12 16 6 O -0.57 -8.31 12.42 -148.98 -1.85 -10.16 16 7 C -0.17 -2.00 1.38 -52.18 -0.07 -2.07 16 8 C 0.18 3.04 5.08 86.38 0.44 3.48 16 9 N -0.73 -13.64 5.00 -478.54 -2.39 -16.03 16 10 C 0.70 19.60 8.53 179.05 1.53 21.12 16 11 O -0.63 -23.99 16.01 -4.00 -0.06 -24.06 16 12 N -0.73 -18.84 5.08 -457.18 -2.32 -21.16 16 13 C 0.18 6.20 2.42 45.12 0.11 6.31 16 14 C -0.12 -4.44 5.68 30.77 0.17 -4.27 16 15 C 0.14 6.33 6.50 86.36 0.56 6.89 16 16 N -0.61 -30.85 3.00 -699.10 -2.09 -32.95 16 17 C -0.26 -14.38 9.58 84.04 0.81 -13.57 16 18 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 19 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 20 N -0.94 -55.19 11.20 21.65 0.24 -54.95 16 21 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.18 8.49 5.31 86.36 0.46 8.95 16 26 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 27 C -0.16 -1.34 7.76 30.62 0.24 -1.10 16 28 C -0.16 -1.66 9.47 30.62 0.29 -1.37 16 29 H 0.06 0.71 7.49 -2.39 -0.02 0.70 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.91 6.63 -2.39 -0.02 0.90 16 33 H 0.06 0.65 6.24 -2.39 -0.01 0.64 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.38 4.33 8.06 -74.06 -0.60 3.73 16 37 H 0.06 1.23 6.92 -2.39 -0.02 1.21 16 38 H 0.06 1.14 7.38 -2.39 -0.02 1.12 16 39 H 0.41 5.29 5.59 -92.71 -0.52 4.77 16 40 H 0.41 7.75 8.62 -92.71 -0.80 6.95 16 41 H 0.05 2.21 7.58 -2.38 -0.02 2.19 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.06 2.43 7.93 -2.38 -0.02 2.42 16 46 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.06 3.41 6.05 -2.39 -0.01 3.40 16 48 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 49 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 50 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.10 0.86 7.10 -2.39 -0.02 0.84 16 52 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.10 1.00 6.92 -2.38 -0.02 0.98 16 Total: -1.00 -70.69 413.00 -1.01 -71.71 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -1.01 Total: 24.82 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.45 Total: 16.26 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.57 Total: -125.08 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.92 Total: -34.22 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.69 -1.01 -71.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611417326.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.636 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds