Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47387 * 2 1 4 4 C 1.53000 * 109.47167 * 119.99721 * 2 1 3 5 5 N 1.46502 * 109.47165 * 174.10754 * 4 2 1 6 6 C 1.46503 * 120.00069 * 276.68512 * 5 4 2 7 7 C 1.50698 * 109.46987 * 270.00107 * 6 5 4 8 8 H 1.08003 * 120.00260 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00113 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00408 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99748 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47086 * 89.99855 * 11 9 7 13 13 H 1.48490 * 109.47426 * 209.99851 * 11 9 7 14 14 H 1.48500 * 109.47075 * 330.00009 * 11 9 7 15 15 C 1.34776 * 119.99805 * 96.69161 * 5 4 2 16 16 O 1.21281 * 120.00097 * 185.40393 * 15 5 4 17 17 C 1.50697 * 120.00130 * 5.39906 * 15 5 4 18 18 N 1.46504 * 109.47056 * 174.69927 * 17 15 5 19 19 C 1.34778 * 119.99606 * 180.02562 * 18 17 15 20 20 O 1.21583 * 120.00508 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99636 * 180.02562 * 19 18 17 22 22 C 1.46500 * 119.99923 * 179.97438 * 21 19 18 23 23 C 1.53003 * 109.47186 * 274.99730 * 22 21 19 24 24 C 1.52999 * 109.47247 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47080 * 59.99826 * 24 23 22 26 26 C 1.53003 * 109.47222 * 300.00188 * 25 24 23 27 27 C 1.52999 * 109.47247 * 59.99914 * 26 25 24 28 28 H 1.08999 * 109.47519 * 300.00461 * 1 2 3 29 29 H 1.09005 * 109.47238 * 60.00108 * 1 2 3 30 30 H 1.09005 * 109.47427 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47519 * 239.99539 * 2 1 3 32 32 H 1.09004 * 109.47350 * 64.70043 * 3 2 1 33 33 H 1.09004 * 109.47646 * 184.70697 * 3 2 1 34 34 H 1.09007 * 109.46982 * 304.70758 * 3 2 1 35 35 H 1.09007 * 109.47170 * 54.10810 * 4 2 1 36 36 H 1.09001 * 109.47259 * 294.10923 * 4 2 1 37 37 H 1.08992 * 109.46864 * 30.00086 * 6 5 4 38 38 H 1.08996 * 109.46751 * 150.00457 * 6 5 4 39 39 H 0.97003 * 119.99434 * 180.02562 * 10 9 7 40 40 H 1.09001 * 109.46942 * 54.70102 * 17 15 5 41 41 H 1.09004 * 109.47263 * 294.69940 * 17 15 5 42 42 H 0.96993 * 120.00029 * 0.02562 * 18 17 15 43 43 H 0.96993 * 120.00000 * 359.97438 * 21 19 18 44 44 H 1.09000 * 109.47128 * 34.99380 * 22 21 19 45 45 H 1.09000 * 109.46802 * 299.99850 * 23 22 21 46 46 H 1.09000 * 109.46898 * 59.99801 * 23 22 21 47 47 H 1.09000 * 109.47101 * 300.00226 * 24 23 22 48 48 H 1.09002 * 109.47158 * 179.97438 * 24 23 22 49 49 H 1.08995 * 109.47338 * 179.97438 * 25 24 23 50 50 H 1.09000 * 109.47284 * 59.99957 * 25 24 23 51 51 H 1.09000 * 109.46802 * 300.00064 * 26 25 24 52 52 H 1.09000 * 109.46898 * 180.02562 * 26 25 24 53 53 H 1.08998 * 109.47280 * 179.97438 * 27 26 25 54 54 H 1.09000 * 109.47097 * 60.00331 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4981 -0.8452 1.1805 6 6 4.1049 -1.9449 0.4264 7 6 4.2993 -3.1306 1.3360 8 1 4.0003 -3.0711 2.3721 9 6 4.8579 -4.2917 0.8454 10 7 5.0271 -5.3266 1.6390 11 14 5.3745 -4.3948 -0.9469 12 1 6.7858 -3.9528 -1.0815 13 1 5.2479 -5.7971 -1.4187 14 1 4.5005 -3.5165 -1.7653 15 6 4.2812 0.0523 1.8111 16 8 5.4854 0.0083 1.6743 17 6 3.6604 1.1108 2.6859 18 7 4.7177 1.8755 3.3520 19 6 4.3962 2.8810 4.1899 20 8 3.2288 3.1538 4.3926 21 7 5.3689 3.5849 4.8023 22 6 5.0195 4.6783 5.7126 23 6 4.8000 5.9612 4.9083 24 6 4.4357 7.1032 5.8591 25 6 5.5736 7.3167 6.8593 26 6 5.7931 6.0338 7.6636 27 6 6.1574 4.8918 6.7128 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.7470 1.9314 0.9291 33 1 3.1267 1.4436 -0.0843 34 1 1.6094 1.9801 -0.8449 35 1 1.5930 -1.7139 1.3036 36 1 1.7653 -0.1500 2.1361 37 1 3.4504 -2.2239 -0.3993 38 1 5.0704 -1.6265 0.0332 39 1 5.4205 -6.1433 1.2938 40 1 3.0273 0.6367 3.4360 41 1 3.0580 1.7813 2.0731 42 1 5.6490 1.6582 3.1900 43 1 6.3001 3.3676 4.6402 44 1 4.1054 4.4256 6.2500 45 1 5.7140 6.2139 4.3709 46 1 3.9896 5.8089 4.1954 47 1 3.5219 6.8508 6.3969 48 1 4.2798 8.0173 5.2861 49 1 5.3144 8.1306 7.5363 50 1 6.4875 7.5692 6.3215 51 1 4.8792 5.7814 8.2013 52 1 6.6035 6.1861 8.3765 53 1 6.3142 3.9779 7.2858 54 1 7.0713 5.1442 6.1751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751380919.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -115.032973 kcal Electronic energy + Delta-G solvation = -30564.762962 eV Core-core repulsion = 26534.531161 eV Total energy + Delta-G solvation = -4030.231801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.58407 -40.79027 -39.10811 -37.88162 -35.79991 -35.23366 -35.11527 -34.23739 -31.66852 -31.16951 -30.13123 -28.49329 -27.73484 -26.89898 -24.38782 -23.58880 -23.20271 -21.82391 -21.49944 -20.89392 -20.21655 -19.37992 -19.09549 -17.88469 -17.67925 -17.13908 -17.05930 -16.35525 -16.10123 -16.00994 -15.60003 -15.36846 -15.30144 -15.05559 -14.83634 -14.60848 -14.57972 -14.30817 -13.95430 -13.89855 -13.70803 -13.48879 -13.39366 -13.10384 -13.01915 -12.82893 -12.68718 -12.53063 -12.27978 -12.21705 -12.04534 -11.92040 -11.83252 -11.71925 -11.66103 -11.55772 -11.37433 -11.27583 -11.11676 -10.85412 -10.82681 -10.39304 -9.83565 -9.45668 -8.34304 -6.39648 1.32964 1.36271 1.44303 1.46909 1.61750 2.09021 2.25400 2.30451 2.99945 3.22387 3.43411 3.74119 3.84689 3.87477 4.00166 4.05695 4.19516 4.23443 4.24707 4.27965 4.33617 4.47324 4.48665 4.58011 4.59140 4.66717 4.72395 4.76265 4.82520 4.87110 4.91505 4.95777 5.03105 5.07303 5.09078 5.14398 5.22351 5.23990 5.24938 5.26598 5.35168 5.36963 5.41243 5.44774 5.49005 5.51828 5.57544 5.61701 5.93172 6.21326 6.54953 6.62235 6.98772 7.13296 7.27955 7.50205 8.82362 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.002450 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.516931 B =11427.724757 C =12728.666333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.147 4.147 4 C 0.104 3.896 5 N -0.588 5.588 6 C 0.227 3.773 7 C -0.536 4.536 8 H 0.030 0.970 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.946 3.054 12 H -0.275 1.275 13 H -0.277 1.277 14 H -0.239 1.239 15 C 0.503 3.497 16 O -0.581 6.581 17 C 0.124 3.876 18 N -0.732 5.732 19 C 0.706 3.294 20 O -0.626 6.626 21 N -0.731 5.731 22 C 0.163 3.837 23 C -0.126 4.126 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.121 4.121 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.268 0.732 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.409 0.591 43 H 0.408 0.592 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.081 0.919 53 H 0.068 0.932 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 25.182 4.890 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.204 4.204 4 C -0.019 4.019 5 N -0.317 5.317 6 C 0.105 3.895 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.768 3.232 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.162 1.162 15 C 0.291 3.709 16 O -0.462 6.462 17 C -0.004 4.004 18 N -0.390 5.390 19 C 0.406 3.594 20 O -0.508 6.508 21 N -0.386 5.386 22 C 0.058 3.942 23 C -0.165 4.165 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.159 4.159 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.246 0.754 43 H 0.244 0.756 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.099 0.901 53 H 0.087 0.913 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.454 25.193 4.999 25.915 hybrid contribution 1.200 -1.255 -0.679 1.865 sum -2.254 23.938 4.319 24.429 Atomic orbital electron populations 1.21730 0.92418 1.02448 1.02983 1.21497 0.97541 0.96352 0.97565 1.21964 0.99930 0.95729 1.02811 1.21978 0.78242 1.02126 0.99535 1.47825 1.07501 1.26091 1.50324 1.19332 0.94256 0.84121 0.91807 1.21526 1.41362 0.97573 0.96969 0.95146 1.25815 0.94891 0.94905 1.02921 1.70048 1.45658 1.04526 1.38136 0.85746 0.79568 0.78289 0.79559 1.20048 1.20189 1.16170 1.20754 0.86865 0.82689 0.80568 1.90611 1.16095 1.74780 1.64683 1.21148 0.90253 0.92908 0.96116 1.44791 1.10753 1.35177 1.48300 1.15938 0.85268 0.79318 0.78895 1.90874 1.18779 1.72264 1.68847 1.45155 1.08561 1.35985 1.48879 1.20931 0.98960 0.84819 0.89473 1.21897 1.01466 0.94776 0.98321 1.21492 0.98894 0.97621 0.97310 1.21564 0.98555 0.97623 0.97802 1.21493 1.02238 0.93996 0.97522 1.21794 0.97372 0.99871 0.96870 0.91495 0.91189 0.92365 0.91764 0.91593 0.94751 0.90843 0.90538 0.88863 0.93255 0.95817 0.92269 0.88885 0.86609 0.75362 0.75572 0.91712 0.91059 0.93908 0.92442 0.91086 0.90809 0.91243 0.92120 0.90059 0.91281 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 2 C -0.11 -2.69 3.11 -10.80 -0.03 -2.72 16 3 C -0.15 -3.35 7.59 71.98 0.55 -2.80 16 4 C 0.10 3.14 4.89 86.38 0.42 3.56 16 5 N -0.59 -23.25 2.26 -826.16 -1.87 -25.12 16 6 C 0.23 10.76 4.29 85.63 0.37 11.13 16 7 C -0.54 -30.89 9.94 25.60 0.25 -30.64 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.75 5.47 84.66 0.46 1.21 16 10 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 11 Si 0.95 43.75 27.47 68.60 1.88 45.64 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 14 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 15 C 0.50 19.78 6.52 87.66 0.57 20.35 16 16 O -0.58 -26.92 15.23 -3.03 -0.05 -26.96 16 17 C 0.12 3.87 4.51 85.63 0.39 4.26 16 18 N -0.73 -21.71 5.53 -482.29 -2.67 -24.38 16 19 C 0.71 20.47 8.53 179.05 1.53 22.00 16 20 O -0.63 -22.01 16.01 -3.98 -0.06 -22.08 16 21 N -0.73 -15.54 5.08 -457.81 -2.33 -17.86 16 22 C 0.16 3.05 2.45 44.99 0.11 3.16 16 23 C -0.13 -2.20 5.49 30.59 0.17 -2.03 16 24 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 25 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 26 C -0.11 -1.21 5.92 30.59 0.18 -1.03 16 27 C -0.12 -1.55 5.39 30.59 0.16 -1.38 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.74 8.01 -2.39 -0.02 1.72 16 32 H 0.07 1.39 6.49 -2.38 -0.02 1.38 16 33 H 0.03 0.92 6.87 -2.38 -0.02 0.90 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.08 2.47 8.12 -2.38 -0.02 2.45 16 36 H 0.09 2.44 6.10 -2.39 -0.01 2.42 16 37 H 0.05 2.17 6.99 -2.39 -0.02 2.15 16 38 H 0.02 1.20 6.78 -2.39 -0.02 1.18 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.09 2.90 7.37 -2.39 -0.02 2.88 16 41 H 0.12 3.24 4.80 -2.39 -0.01 3.23 16 42 H 0.41 11.95 7.46 -92.71 -0.69 11.26 16 43 H 0.41 6.73 8.62 -92.71 -0.80 5.93 16 44 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -75.89 416.98 0.71 -75.18 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.66 Total: 33.53 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 6.15 Total: 20.76 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -6.56 Total: -126.07 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.11 Total: -49.04 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -75.89 0.71 -75.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751380919.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.850 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds