Wall clock time and date at job start Sat Apr 11 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 O 1.42900 * 109.46763 * 240.00227 * 2 1 3 5 5 C 1.52994 * 109.47148 * 119.99916 * 2 1 3 6 6 N 1.46903 * 109.47448 * 185.23022 * 5 2 1 7 7 C 1.47443 * 110.99967 * 282.80111 * 6 5 2 8 8 C 1.54310 * 107.37352 * 236.65866 * 7 6 5 9 9 C 1.55407 * 102.89674 * 337.89517 * 8 7 6 10 10 H 1.09004 * 110.86759 * 277.38994 * 9 8 7 11 11 N 1.46497 * 111.05403 * 153.65223 * 9 8 7 12 12 C 1.34777 * 120.00493 * 92.58961 * 11 9 8 13 13 O 1.21587 * 119.99609 * 359.97438 * 12 11 9 14 14 N 1.34772 * 120.00203 * 179.97438 * 12 11 9 15 15 C 1.46496 * 119.99699 * 179.97438 * 14 12 11 16 16 H 1.09003 * 110.02109 * 326.38799 * 15 14 12 17 17 C 1.54274 * 110.03605 * 87.83390 * 15 14 12 18 18 C 1.54883 * 104.19718 * 95.66886 * 17 15 14 19 19 C 1.54889 * 102.74651 * 37.94718 * 18 17 15 20 20 H 1.08998 * 110.48840 * 80.73611 * 19 18 17 21 21 C 1.50710 * 110.59829 * 203.32055 * 19 18 17 22 22 H 1.08004 * 119.99589 * 114.84123 * 21 19 18 23 23 C 1.37873 * 120.00145 * 294.83772 * 21 19 18 24 24 N 1.31518 * 119.99810 * 0.02562 * 23 21 19 25 25 Si 1.86792 * 120.00151 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47189 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47080 * 120.00313 * 25 23 21 28 28 H 1.48501 * 109.47612 * 240.00166 * 25 23 21 29 29 C 1.53880 * 110.03150 * 204.99816 * 15 14 12 30 30 C 1.47839 * 111.00098 * 161.95554 * 6 5 2 31 31 H 1.09000 * 109.46938 * 301.91243 * 1 2 3 32 32 H 1.08992 * 109.46995 * 61.91557 * 1 2 3 33 33 H 1.09000 * 109.46934 * 181.91230 * 1 2 3 34 34 H 1.09003 * 109.46622 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47231 * 300.00065 * 3 2 1 36 36 H 1.08993 * 109.47007 * 60.00258 * 3 2 1 37 37 H 0.96704 * 113.99503 * 172.67258 * 4 2 1 38 38 H 1.09009 * 109.46903 * 65.23251 * 5 2 1 39 39 H 1.09005 * 109.47579 * 305.23480 * 5 2 1 40 40 H 1.09010 * 109.88905 * 356.14631 * 7 6 5 41 41 H 1.09004 * 109.88971 * 117.16485 * 7 6 5 42 42 H 1.08999 * 110.71217 * 96.17449 * 8 7 6 43 43 H 1.09001 * 110.71038 * 219.41925 * 8 7 6 44 44 H 0.97001 * 119.99796 * 272.57735 * 11 9 8 45 45 H 0.97001 * 120.00087 * 359.97438 * 14 12 11 46 46 H 1.08995 * 110.48760 * 214.35291 * 17 15 14 47 47 H 1.09009 * 110.47962 * 336.99316 * 17 15 14 48 48 H 1.08999 * 110.75851 * 279.63527 * 18 17 15 49 49 H 1.09000 * 110.91284 * 156.33169 * 18 17 15 50 50 H 0.97000 * 120.00097 * 179.97438 * 24 23 21 51 51 H 1.08996 * 110.02947 * 0.02562 * 29 15 14 52 52 H 1.08995 * 110.03343 * 121.38311 * 29 15 14 53 53 H 1.08993 * 110.37487 * 265.19321 * 30 6 5 54 54 H 1.09004 * 110.37671 * 27.43067 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 7 3.5037 -0.6129 1.3141 7 6 4.1451 -1.5507 0.3744 8 6 5.0991 -2.4443 1.1944 9 6 5.3676 -1.5906 2.4649 10 1 6.1499 -0.8544 2.2799 11 7 5.7107 -2.4409 3.6075 12 6 7.0017 -2.7185 3.8774 13 8 7.8816 -2.2634 3.1724 14 7 7.3173 -3.5003 4.9289 15 6 8.7205 -3.8024 5.2219 16 1 9.2896 -3.8680 4.2945 17 6 9.3172 -2.7098 6.1331 18 6 9.1755 -3.2884 7.5628 19 6 9.4792 -4.7929 7.3542 20 1 10.5550 -4.9623 7.3098 21 6 8.8619 -5.6160 8.4555 22 1 8.0733 -6.3179 8.2278 23 6 9.3041 -5.4731 9.7536 24 7 10.2641 -4.6180 10.0309 25 14 8.5386 -6.4927 11.1187 26 1 7.4864 -7.3724 10.5490 27 1 9.5863 -7.3268 11.7606 28 1 7.9348 -5.5903 12.1317 29 6 8.8235 -5.1269 5.9984 30 6 3.9964 -0.9019 2.6776 31 1 -0.3633 0.5433 0.8723 32 1 -0.3633 0.4838 -0.9066 33 1 -0.3633 -1.0271 0.0343 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.9635 -0.6154 -1.2914 38 1 1.7552 -1.7724 1.2036 39 1 1.6022 -0.2644 2.1368 40 1 3.3871 -2.1653 -0.1114 41 1 4.7092 -0.9963 -0.3757 42 1 4.6152 -3.3848 1.4579 43 1 6.0237 -2.6256 0.6464 44 1 5.0087 -2.8041 4.1698 45 1 6.6153 -3.8630 5.4915 46 1 10.3668 -2.5428 5.8914 47 1 8.7509 -1.7832 6.0387 48 1 8.1618 -3.1474 7.9379 49 1 9.9022 -2.8378 8.2387 50 1 10.5749 -4.5171 10.9442 51 1 7.8295 -5.5451 6.1567 52 1 9.4426 -5.8352 5.4479 53 1 4.1197 0.0231 3.2406 54 1 3.3098 -1.5718 3.1952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875635184.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:49 Heat of formation + Delta-G solvation = -111.856027 kcal Electronic energy + Delta-G solvation = -30084.096069 eV Core-core repulsion = 26054.002031 eV Total energy + Delta-G solvation = -4030.094038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.39317 -40.50101 -38.97917 -38.12525 -35.25944 -35.18406 -33.83102 -33.39920 -31.19884 -29.98610 -29.61223 -28.42266 -28.14414 -26.25525 -25.68361 -22.90860 -22.15645 -21.86044 -21.18159 -21.02267 -20.88942 -19.34049 -18.51321 -17.85077 -17.46929 -16.80195 -16.73443 -16.55969 -16.23435 -15.81445 -15.62329 -15.47980 -15.24586 -14.66263 -14.58380 -14.41293 -14.30975 -14.02479 -13.81339 -13.56023 -13.26964 -13.13430 -12.97487 -12.94086 -12.77280 -12.71049 -12.55094 -12.49985 -12.41284 -12.32786 -12.25842 -12.14773 -11.73754 -11.65031 -11.47650 -11.43530 -11.23455 -11.05733 -10.79636 -10.78488 -10.44389 -10.26607 -9.71055 -9.36181 -8.08869 -6.18261 1.41989 1.44724 1.54876 1.69457 2.18455 2.45629 2.87909 3.22510 3.30486 3.41988 3.53953 3.67936 3.95048 3.97808 4.05816 4.10076 4.11970 4.19702 4.25192 4.27616 4.33658 4.50024 4.62573 4.72044 4.73335 4.77955 4.81123 4.86410 4.87580 4.95540 4.97427 5.03187 5.06287 5.07325 5.12263 5.14168 5.17453 5.20874 5.28714 5.30398 5.45751 5.47169 5.52985 5.68357 5.74325 5.86952 5.93125 5.98780 6.01237 6.08761 6.39943 6.80692 6.93345 7.14140 7.49318 7.63559 9.00249 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022730 B = 0.001826 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.566562 B =15327.939250 C =15886.414446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.129 3.871 3 C -0.164 4.164 4 O -0.580 6.580 5 C 0.028 3.972 6 N -0.525 5.525 7 C 0.037 3.963 8 C -0.149 4.149 9 C 0.155 3.845 10 H 0.081 0.919 11 N -0.726 5.726 12 C 0.702 3.298 13 O -0.634 6.634 14 N -0.723 5.723 15 C 0.172 3.828 16 H 0.073 0.927 17 C -0.126 4.126 18 C -0.087 4.087 19 C 0.038 3.962 20 H 0.000 1.000 21 C -0.524 4.524 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.921 5.921 25 Si 0.952 3.048 26 H -0.263 1.263 27 H -0.286 1.286 28 H -0.284 1.284 29 C -0.109 4.109 30 C 0.047 3.953 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.382 0.618 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.410 0.590 45 H 0.407 0.593 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.040 0.960 49 H 0.034 0.966 50 H 0.258 0.742 51 H 0.072 0.928 52 H 0.062 0.938 53 H 0.091 0.909 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.453 9.067 -19.006 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.088 3.912 3 C -0.222 4.222 4 O -0.390 6.390 5 C -0.101 4.101 6 N -0.249 5.249 7 C -0.091 4.091 8 C -0.189 4.189 9 C 0.049 3.951 10 H 0.099 0.901 11 N -0.381 5.381 12 C 0.402 3.598 13 O -0.516 6.516 14 N -0.378 5.378 15 C 0.066 3.934 16 H 0.091 0.909 17 C -0.165 4.165 18 C -0.125 4.125 19 C 0.019 3.981 20 H 0.018 0.982 21 C -0.562 4.562 22 H 0.078 0.922 23 C -0.189 4.189 24 N -0.561 5.561 25 Si 0.779 3.221 26 H -0.187 1.187 27 H -0.212 1.212 28 H -0.210 1.210 29 C -0.147 4.147 30 C -0.082 4.082 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.246 0.754 45 H 0.243 0.757 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.053 0.947 50 H 0.067 0.933 51 H 0.090 0.910 52 H 0.081 0.919 53 H 0.109 0.891 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.066 9.910 -19.703 29.817 hybrid contribution 0.073 -1.470 1.880 2.388 sum -19.993 8.439 -17.823 28.082 Atomic orbital electron populations 1.21773 0.92131 1.02666 1.03203 1.21304 0.94580 0.91525 0.83769 1.22297 1.02438 0.95331 1.02093 1.86519 1.28986 1.77504 1.45975 1.23014 0.87580 0.99725 0.99767 1.63596 1.06010 1.50337 1.04988 1.23022 0.97143 0.93323 0.95622 1.23168 1.00101 0.98970 0.96622 1.21882 0.97085 0.91608 0.84568 0.90123 1.44837 1.05393 1.54859 1.33047 1.16107 0.83428 0.79241 0.80997 1.90875 1.48627 1.58695 1.53371 1.45251 1.08925 1.53223 1.30395 1.21290 0.80581 0.94409 0.97128 0.90903 1.22741 0.99966 0.97533 0.96225 1.22197 0.98878 0.97686 0.93757 1.19458 0.94301 0.92726 0.91599 0.98222 1.21585 1.19613 1.22163 0.92835 0.92232 1.25779 0.95498 0.96458 1.01202 1.70109 1.29236 1.36921 1.19830 0.85590 0.78463 0.78736 0.79340 1.18678 1.21218 1.20967 1.22421 1.01435 0.94887 0.95999 1.23164 0.93484 1.00514 0.91015 0.89587 0.92012 0.92414 0.91489 0.92833 0.91295 0.76738 0.93835 0.88942 0.90739 0.89489 0.90916 0.91549 0.75378 0.75734 0.92193 0.92677 0.94137 0.94672 0.93280 0.90980 0.91939 0.89077 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.84 71.98 0.64 -0.77 16 2 C 0.13 1.51 1.21 -10.79 -0.01 1.50 16 3 C -0.16 -1.83 8.54 71.98 0.61 -1.21 16 4 O -0.58 -8.56 11.96 -148.98 -1.78 -10.34 16 5 C 0.03 0.30 4.00 86.30 0.35 0.65 16 6 N -0.53 -6.51 4.12 -885.54 -3.65 -10.16 16 7 C 0.04 0.47 4.95 86.64 0.43 0.90 16 8 C -0.15 -2.48 6.67 31.87 0.21 -2.27 16 9 C 0.16 2.89 3.42 46.47 0.16 3.05 16 10 H 0.08 1.97 7.54 -2.39 -0.02 1.95 16 11 N -0.73 -14.73 5.21 -450.76 -2.35 -17.08 16 12 C 0.70 20.75 8.56 179.06 1.53 22.28 16 13 O -0.63 -24.15 15.64 -3.99 -0.06 -24.21 16 14 N -0.72 -21.00 5.03 -454.34 -2.29 -23.29 16 15 C 0.17 6.01 3.25 45.72 0.15 6.16 16 16 H 0.07 2.66 7.56 -2.39 -0.02 2.64 16 17 C -0.13 -4.86 6.54 31.67 0.21 -4.66 16 18 C -0.09 -3.98 5.75 31.88 0.18 -3.79 16 19 C 0.04 1.82 2.71 -10.46 -0.03 1.79 16 20 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 21 C -0.52 -27.48 8.47 25.60 0.22 -27.26 16 22 H 0.06 3.00 7.55 -2.91 -0.02 2.98 16 23 C 0.01 0.49 5.35 84.65 0.45 0.95 16 24 N -0.92 -53.03 12.29 21.45 0.26 -52.77 16 25 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 C -0.11 -4.14 6.13 31.32 0.19 -3.95 16 30 C 0.05 0.61 6.27 86.77 0.54 1.15 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.85 7.47 -2.39 -0.02 0.83 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.38 4.36 6.22 -74.05 -0.46 3.90 16 38 H 0.04 0.53 7.72 -2.38 -0.02 0.51 16 39 H 0.09 0.83 7.97 -2.38 -0.02 0.81 16 40 H 0.07 0.92 6.21 -2.38 -0.01 0.91 16 41 H 0.09 1.02 7.63 -2.38 -0.02 1.00 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.41 5.92 8.58 -92.71 -0.80 5.12 16 45 H 0.41 9.96 8.33 -92.71 -0.77 9.19 16 46 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.05 2.07 8.04 -2.38 -0.02 2.05 16 48 H 0.04 1.85 8.05 -2.39 -0.02 1.84 16 49 H 0.03 1.80 7.55 -2.39 -0.02 1.78 16 50 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 51 H 0.07 2.57 7.14 -2.39 -0.02 2.55 16 52 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.07 0.71 7.68 -2.39 -0.02 0.69 16 Total: -1.00 -66.55 414.87 -3.13 -69.68 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -1.13 Total: 29.18 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 5.83 Total: -5.49 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -8.02 Total: -103.30 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.84 Total: -34.55 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.55 -3.13 -69.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875635184.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.176 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds