Wall clock time and date at job start Sat Apr 11 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99592 * 2 1 4 4 C 1.50704 * 109.47086 * 270.00090 * 3 2 1 5 5 H 1.08003 * 120.00221 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99945 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00213 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99870 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46844 * 90.00607 * 8 6 4 10 10 H 1.48500 * 109.46654 * 210.00147 * 8 6 4 11 11 H 1.48494 * 109.47166 * 329.99906 * 8 6 4 12 12 C 1.34770 * 120.00114 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00169 * 179.97438 * 12 2 1 14 14 C 1.50705 * 120.00252 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47110 * 180.02562 * 14 12 2 16 16 N 1.46897 * 109.46897 * 180.02562 * 15 14 12 17 17 C 1.47852 * 111.00179 * 74.99960 * 16 15 14 18 18 C 1.54907 * 104.79459 * 146.36380 * 17 16 15 19 19 C 1.55397 * 101.74374 * 323.01598 * 18 17 16 20 20 C 1.47448 * 111.00123 * 195.84052 * 16 15 14 21 21 H 1.09003 * 109.88725 * 117.17352 * 20 16 15 22 22 C 1.50696 * 109.88703 * 356.15196 * 20 16 15 23 23 O 1.21289 * 119.99797 * 309.75042 * 22 20 16 24 24 N 1.34773 * 120.00255 * 129.75053 * 22 20 16 25 25 C 1.46503 * 119.99912 * 179.97438 * 24 22 20 26 26 C 1.53006 * 109.47236 * 60.00137 * 25 24 22 27 27 C 1.52992 * 109.47372 * 299.99991 * 25 24 22 28 28 C 1.53001 * 109.46998 * 179.97438 * 25 24 22 29 29 H 1.08997 * 109.46671 * 269.99505 * 1 2 3 30 30 H 1.09000 * 109.47112 * 30.00021 * 1 2 3 31 31 H 1.09004 * 109.47084 * 149.99875 * 1 2 3 32 32 H 1.09000 * 109.47026 * 29.99945 * 3 2 1 33 33 H 1.08998 * 109.47001 * 150.00460 * 3 2 1 34 34 H 0.96998 * 120.00109 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46521 * 59.99967 * 14 12 2 36 36 H 1.08999 * 109.46661 * 300.00534 * 14 12 2 37 37 H 1.08995 * 109.47218 * 60.00321 * 15 14 12 38 38 H 1.08998 * 109.47088 * 299.99651 * 15 14 12 39 39 H 1.09001 * 110.37329 * 265.19140 * 17 16 15 40 40 H 1.09000 * 110.37306 * 27.42030 * 17 16 15 41 41 H 1.09001 * 110.99149 * 81.02479 * 18 17 16 42 42 H 1.09001 * 110.98621 * 204.80097 * 18 17 16 43 43 H 1.08991 * 110.68324 * 277.17714 * 19 18 17 44 44 H 1.08997 * 110.84298 * 153.86014 * 19 18 17 45 45 H 0.97001 * 120.00188 * 359.97438 * 24 22 20 46 46 H 1.09003 * 109.46902 * 299.99708 * 26 25 24 47 47 H 1.08997 * 109.47215 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.47350 * 59.99358 * 26 25 24 49 49 H 1.08997 * 109.47279 * 180.02562 * 27 25 24 50 50 H 1.09003 * 109.47032 * 299.99727 * 27 25 24 51 51 H 1.09003 * 109.47226 * 60.00011 * 27 25 24 52 52 H 1.09004 * 109.47196 * 300.00186 * 28 25 24 53 53 H 1.08995 * 109.46864 * 60.00198 * 28 25 24 54 54 H 1.08997 * 109.47111 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4209 5 1 2.0974 1.0963 -2.2418 6 6 3.1267 2.8776 -1.6728 7 7 3.5549 3.6173 -0.6732 8 14 3.4386 3.4165 -3.4340 9 1 2.3090 4.2597 -3.9010 10 1 4.6992 4.1990 -3.4962 11 1 3.5557 2.2192 -4.3046 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 6 2.3798 -3.6352 -0.0005 16 7 1.6453 -4.9074 -0.0011 17 6 1.0715 -5.1873 -1.3347 18 6 1.1300 -6.7289 -1.4749 19 6 2.4755 -7.0596 -0.7712 20 6 2.5279 -6.0272 0.3746 21 1 2.1757 -6.4824 1.3003 22 6 3.9393 -5.5301 0.5527 23 8 4.4566 -4.8517 -0.3095 24 7 4.6268 -5.8394 1.6698 25 6 5.9991 -5.3565 1.8426 26 6 6.0090 -3.8268 1.8142 27 6 6.8752 -5.8933 0.7090 28 6 6.5462 -5.8447 3.1855 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 4.0323 4.4428 -0.8504 35 1 0.7585 -2.5298 -0.8903 36 1 0.7591 -2.5302 0.8897 37 1 3.0064 -3.5774 0.8894 38 1 3.0064 -3.5774 -0.8905 39 1 0.0392 -4.8407 -1.3839 40 1 1.6684 -4.7108 -2.1123 41 1 0.2947 -7.2001 -0.9568 42 1 1.1534 -7.0249 -2.5236 43 1 3.3123 -6.9190 -1.4552 44 1 2.4666 -8.0749 -0.3749 45 1 4.2130 -6.3817 2.3595 46 1 5.6191 -3.4787 0.8576 47 1 7.0299 -3.4676 1.9432 48 1 5.3848 -3.4443 2.6217 49 1 7.8963 -5.5345 0.8378 50 1 6.8683 -6.9831 0.7293 51 1 6.4853 -5.5452 -0.2475 52 1 5.9219 -5.4619 3.9929 53 1 6.5391 -6.9344 3.2062 54 1 7.5670 -5.4851 3.3143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932440042.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:04 Heat of formation + Delta-G solvation = -92.037126 kcal Electronic energy + Delta-G solvation = -31711.260667 eV Core-core repulsion = 27682.026041 eV Total energy + Delta-G solvation = -4029.234626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.97959 -40.60896 -39.32120 -37.19817 -36.62458 -34.84622 -34.32487 -33.20871 -30.95846 -30.09172 -29.28112 -28.29822 -28.27479 -27.29563 -25.59767 -24.19086 -23.50016 -22.09898 -21.01291 -20.62034 -19.95020 -18.73734 -18.38119 -17.86230 -17.26624 -16.94287 -16.77158 -16.48723 -16.13279 -16.06091 -15.93235 -15.33955 -15.05939 -14.72333 -14.60120 -14.44278 -14.17975 -13.95799 -13.80522 -13.56447 -13.45300 -13.31732 -13.17149 -13.15059 -13.09166 -12.89768 -12.81354 -12.65366 -12.60062 -12.54367 -12.27771 -12.24406 -12.09402 -12.02112 -11.98084 -11.91237 -11.73722 -11.62470 -10.73538 -10.67445 -10.59478 -10.08544 -9.43197 -9.32839 -8.25733 -6.40940 1.31752 1.35794 1.45999 1.57050 1.83756 2.17939 2.27208 2.40045 2.98783 3.03289 3.49517 3.68948 3.72115 3.87056 3.91176 3.95520 4.05052 4.08733 4.17720 4.24532 4.36050 4.42091 4.55656 4.61409 4.63902 4.65164 4.70639 4.74811 4.79271 4.80019 4.83632 4.88996 4.90231 4.94328 4.96281 5.00024 5.04369 5.06563 5.11593 5.17815 5.20151 5.30046 5.33962 5.35511 5.53372 5.63763 5.82788 5.83525 5.87676 6.03380 6.63035 6.66320 6.77674 7.25079 7.33745 7.48769 8.81375 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.003221 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.613790 B = 8690.492621 C = 9981.707620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.491 3.509 13 O -0.598 6.598 14 C -0.115 4.115 15 C 0.082 3.918 16 N -0.499 5.499 17 C 0.028 3.972 18 C -0.114 4.114 19 C -0.123 4.123 20 C 0.052 3.948 21 H 0.133 0.867 22 C 0.493 3.507 23 O -0.566 6.566 24 N -0.710 5.710 25 C 0.169 3.831 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.025 0.975 33 H -0.007 1.007 34 H 0.268 0.732 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.112 0.888 45 H 0.415 0.585 46 H 0.037 0.963 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.041 0.959 52 H 0.068 0.932 53 H 0.083 0.917 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 -28.150 6.661 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.202 1.202 12 C 0.280 3.720 13 O -0.479 6.479 14 C -0.155 4.155 15 C -0.047 4.047 16 N -0.224 5.224 17 C -0.100 4.100 18 C -0.152 4.152 19 C -0.162 4.162 20 C -0.059 4.059 21 H 0.151 0.849 22 C 0.280 3.720 23 O -0.444 6.444 24 N -0.364 5.364 25 C 0.083 3.917 26 C -0.219 4.219 27 C -0.215 4.215 28 C -0.202 4.202 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.121 0.879 40 H 0.044 0.956 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.252 0.748 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.060 0.940 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.192 -27.426 6.487 28.657 hybrid contribution 1.273 1.119 -1.146 2.046 sum -3.919 -26.306 5.341 27.128 Atomic orbital electron populations 1.21936 0.77708 1.03966 1.02659 1.48205 1.08508 1.06264 1.71387 1.18720 0.90959 0.80502 0.95941 1.21702 1.37008 1.06575 0.93016 0.93173 1.25883 0.94786 0.96383 1.02154 1.70054 1.38860 1.14819 1.33041 0.85408 0.78318 0.78136 0.78905 1.18282 1.20419 1.20169 1.21404 0.87856 0.86804 0.75962 1.90662 1.16816 1.88207 1.52237 1.21548 0.98792 0.89206 1.05962 1.21960 0.93479 0.88575 1.00639 1.64058 1.29867 1.00407 1.28062 1.23336 1.00779 0.97650 0.88185 1.22737 0.97288 0.93371 1.01835 1.22794 0.98520 0.99319 0.95564 1.22875 0.87116 0.93093 1.02839 0.84901 1.21556 0.89100 0.79540 0.81845 1.90762 1.70871 1.38843 1.43899 1.46169 1.14779 1.54405 1.21028 1.20352 0.81717 0.92406 0.97233 1.22173 1.01846 0.96474 1.01431 1.22136 0.99521 1.01360 0.98490 1.22024 1.02168 1.02673 0.93373 0.90982 0.91557 0.88829 0.95711 0.98885 0.92334 0.87536 0.86192 0.93118 0.95089 0.87928 0.95614 0.87941 0.89605 0.93155 0.86919 0.74770 0.94431 0.91528 0.93478 0.91260 0.91011 0.93989 0.91283 0.89772 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 10.24 127.77 1.31 3.83 16 2 N -0.61 -28.14 2.86 -851.10 -2.43 -30.57 16 3 C 0.26 15.02 5.16 85.63 0.44 15.47 16 4 C -0.54 -33.36 9.39 25.60 0.24 -33.12 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.41 5.46 84.65 0.46 0.88 16 7 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 8 Si 0.97 47.14 29.54 68.60 2.03 49.17 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 12 C 0.49 22.72 7.67 87.66 0.67 23.40 16 13 O -0.60 -34.69 15.56 -3.05 -0.05 -34.74 16 14 C -0.11 -3.71 4.37 29.85 0.13 -3.58 16 15 C 0.08 2.78 2.69 86.30 0.23 3.01 16 16 N -0.50 -11.74 5.12 -864.89 -4.43 -16.17 16 17 C 0.03 0.57 6.08 86.77 0.53 1.09 16 18 C -0.11 -1.54 7.08 32.07 0.23 -1.31 16 19 C -0.12 -1.89 6.48 31.87 0.21 -1.68 16 20 C 0.05 0.99 3.83 44.51 0.17 1.17 16 21 H 0.13 1.65 7.96 -2.39 -0.02 1.63 16 22 C 0.49 12.74 4.29 87.66 0.38 13.12 16 23 O -0.57 -20.83 9.99 -3.06 -0.03 -20.86 16 24 N -0.71 -13.88 5.11 -422.92 -2.16 -16.04 16 25 C 0.17 3.64 1.06 3.60 0.00 3.64 16 26 C -0.16 -4.95 8.40 71.98 0.60 -4.34 16 27 C -0.16 -3.56 8.40 71.98 0.60 -2.96 16 28 C -0.14 -1.92 8.59 71.98 0.62 -1.30 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 31 H 0.09 2.30 6.44 -2.38 -0.02 2.28 16 32 H 0.02 1.43 8.07 -2.39 -0.02 1.41 16 33 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.11 2.96 6.96 -2.39 -0.02 2.94 16 36 H 0.12 3.15 8.11 -2.39 -0.02 3.13 16 37 H 0.05 1.95 6.45 -2.39 -0.02 1.93 16 38 H 0.03 1.33 6.03 -2.39 -0.01 1.32 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.03 0.67 7.52 -2.39 -0.02 0.66 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.05 7.75 -2.39 -0.02 1.03 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.41 4.83 8.34 -92.71 -0.77 4.05 16 46 H 0.04 1.54 6.17 -2.39 -0.01 1.52 16 47 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 51 H 0.04 1.28 6.17 -2.39 -0.01 1.27 16 52 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 53 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -88.61 417.26 0.14 -88.47 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.10 Total: 21.64 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.83 Total: 17.31 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -8.73 Total: -120.99 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.08 Total: -55.60 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -88.61 0.14 -88.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932440042.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.563 kcal (2) G-P(sol) polarization free energy of solvation -88.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds