Wall clock time and date at job start Sat Apr 11 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47093 * 2 1 4 4 C 1.52996 * 109.47394 * 120.00105 * 2 1 3 5 5 H 1.09002 * 109.47508 * 179.45462 * 4 2 1 6 6 C 1.50696 * 109.47128 * 299.45591 * 4 2 1 7 7 O 1.21278 * 120.00292 * 82.19004 * 6 4 2 8 8 N 1.34784 * 119.99813 * 262.18809 * 6 4 2 9 9 C 1.47471 * 125.66190 * 4.21560 * 8 6 4 10 10 C 1.55255 * 104.78280 * 155.90968 * 9 8 6 11 11 C 1.54516 * 101.42843 * 36.67794 * 10 9 8 12 12 C 1.47180 * 125.65941 * 184.51793 * 8 6 4 13 13 C 1.52508 * 110.06198 * 206.73983 * 11 10 9 14 14 N 1.47305 * 108.41024 * 287.84950 * 13 11 10 15 15 C 1.36936 * 121.06118 * 130.60962 * 14 13 11 16 16 H 1.08004 * 120.00274 * 326.50238 * 15 14 13 17 17 C 1.38812 * 120.00188 * 146.50754 * 15 14 13 18 18 N 1.31621 * 119.99991 * 165.82248 * 17 15 14 19 19 Si 1.86802 * 119.99875 * 345.82482 * 17 15 14 20 20 H 1.48495 * 109.47326 * 90.10473 * 19 17 15 21 21 H 1.48508 * 109.46886 * 210.10473 * 19 17 15 22 22 H 1.48500 * 109.46961 * 330.10109 * 19 17 15 23 23 C 1.47162 * 117.87617 * 310.62741 * 14 13 11 24 24 C 1.53282 * 108.53689 * 51.13834 * 23 14 13 25 25 O 1.42072 * 110.34100 * 83.74907 * 11 10 9 26 26 N 1.46900 * 109.47189 * 59.45469 * 4 2 1 27 27 C 1.46906 * 111.00148 * 62.28608 * 26 4 2 28 28 C 1.46891 * 111.00412 * 186.23868 * 26 4 2 29 29 H 1.09000 * 109.46823 * 305.77217 * 1 2 3 30 30 H 1.08999 * 109.47377 * 65.77530 * 1 2 3 31 31 H 1.09001 * 109.46940 * 185.77493 * 1 2 3 32 32 H 1.08998 * 109.47150 * 240.00551 * 2 1 3 33 33 H 1.08995 * 109.47313 * 185.04550 * 3 2 1 34 34 H 1.08997 * 109.46722 * 305.04781 * 3 2 1 35 35 H 1.09006 * 109.46769 * 65.04585 * 3 2 1 36 36 H 1.09003 * 110.35630 * 274.86225 * 9 8 6 37 37 H 1.08998 * 110.35934 * 37.15404 * 9 8 6 38 38 H 1.08993 * 111.21766 * 278.58184 * 10 9 8 39 39 H 1.09007 * 110.91130 * 154.63419 * 10 9 8 40 40 H 1.08998 * 109.91434 * 300.84633 * 12 8 6 41 41 H 1.09007 * 109.91042 * 61.92530 * 12 8 6 42 42 H 1.08999 * 109.67630 * 47.58042 * 13 11 10 43 43 H 1.08998 * 109.68184 * 168.11773 * 13 11 10 44 44 H 0.97004 * 119.99744 * 179.97438 * 18 17 15 45 45 H 1.08994 * 109.62748 * 291.42318 * 23 14 13 46 46 H 1.08998 * 109.77850 * 170.94698 * 23 14 13 47 47 H 1.08999 * 109.51061 * 187.15842 * 24 23 14 48 48 H 1.09004 * 109.51452 * 67.00310 * 24 23 14 49 49 H 1.08996 * 109.47330 * 178.47718 * 27 26 4 50 50 H 1.08998 * 109.46641 * 58.46923 * 27 26 4 51 51 H 1.09005 * 109.47100 * 298.47703 * 27 26 4 52 52 H 1.09003 * 109.47570 * 302.11701 * 28 26 4 53 53 H 1.08999 * 109.47087 * 62.11603 * 28 26 4 54 54 H 1.09003 * 109.47557 * 182.11707 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1300 -0.7297 1.2443 6 6 1.5488 -0.0031 2.4796 7 8 0.4300 -0.2129 2.8981 8 7 2.3529 0.8723 3.1150 9 6 3.6960 1.2864 2.6686 10 6 3.9193 2.6770 3.3218 11 6 3.2295 2.4863 4.6913 12 6 2.0387 1.5688 4.3730 13 6 2.7430 3.8301 5.2236 14 7 3.9153 4.6139 5.6493 15 6 4.0832 5.9109 5.2434 16 1 3.7424 6.2194 4.2661 17 6 4.6916 6.8293 6.0880 18 7 5.1059 7.9853 5.6143 19 14 4.9224 6.4244 7.8970 20 1 6.2336 5.7548 8.0910 21 1 4.8837 7.6772 8.6935 22 1 3.8334 5.5195 8.3445 23 6 4.9004 3.9585 6.5243 24 6 5.2983 2.6196 5.8929 25 8 4.1173 1.8633 5.6089 26 7 1.5397 -2.1024 1.2558 27 6 2.0439 -2.8506 0.0964 28 6 1.8856 -2.7817 2.5114 29 1 -0.3633 0.6007 0.8338 30 1 -0.3634 0.4217 -0.9371 31 1 -0.3633 -1.0225 0.1034 32 1 1.8933 -0.5137 -0.8900 33 1 3.1262 1.4439 -0.0904 34 1 1.6047 1.9817 -0.8413 35 1 1.7523 1.9296 0.9318 36 1 4.4467 0.5766 3.0162 37 1 3.7257 1.3693 1.5822 38 1 3.4345 3.4656 2.7464 39 1 4.9827 2.8827 3.4451 40 1 1.1337 2.1640 4.2517 41 1 1.9009 0.8432 5.1747 42 1 2.2096 4.3649 4.4377 43 1 2.0802 3.6699 6.0740 44 1 5.5307 8.6272 6.2046 45 1 4.4595 3.7839 7.5056 46 1 5.7819 4.5915 6.6264 47 1 5.9289 2.0633 6.5864 48 1 5.8454 2.8015 4.9679 49 1 1.6802 -3.8771 0.1403 50 1 3.1338 -2.8502 0.1098 51 1 1.6917 -2.3793 -0.8213 52 1 2.9672 -2.7689 2.6455 53 1 1.4100 -2.2666 3.3461 54 1 1.5362 -3.8135 2.4746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972419705.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:56 Heat of formation + Delta-G solvation = -48.886268 kcal Electronic energy + Delta-G solvation = -32703.129038 eV Core-core repulsion = 28675.765574 eV Total energy + Delta-G solvation = -4027.363464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98800 -40.78480 -38.37770 -37.48084 -36.35182 -35.44141 -33.72881 -33.01404 -30.99974 -29.73957 -28.90266 -28.46190 -27.99594 -27.22330 -25.10106 -24.35317 -23.47165 -23.17461 -21.82115 -20.69875 -19.50014 -18.96836 -18.44420 -17.90818 -17.42015 -17.17681 -16.69880 -16.25717 -16.15191 -15.93255 -15.74209 -15.49161 -15.31001 -15.18322 -14.89745 -14.44221 -14.27981 -14.17818 -13.82523 -13.75687 -13.66269 -13.58775 -13.46194 -13.26732 -13.19003 -13.06127 -12.75253 -12.64176 -12.54915 -12.39286 -12.37108 -12.24997 -12.11414 -11.87337 -11.77710 -11.70208 -11.53806 -11.30478 -10.99540 -10.70459 -10.50636 -9.71300 -9.31510 -8.86617 -8.19936 -5.61846 1.26660 1.40135 1.48070 1.54464 1.79974 2.37609 2.62130 2.90715 2.98131 3.14774 3.37275 3.49969 3.71933 3.82997 3.87084 3.92704 4.09914 4.16459 4.18930 4.22443 4.26637 4.38434 4.40132 4.42608 4.43311 4.51783 4.57229 4.57811 4.64413 4.65472 4.68913 4.74204 4.80806 4.84194 4.85084 4.91468 4.95738 4.98960 5.05354 5.07209 5.08820 5.13276 5.18401 5.20183 5.37471 5.54010 5.83191 5.87347 6.03036 6.09957 6.24070 6.47732 6.81624 7.13879 7.51699 7.95909 8.99317 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.003021 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.798378 B = 9265.512571 C = 9753.733132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.159 4.159 4 C 0.080 3.920 5 H 0.072 0.928 6 C 0.537 3.463 7 O -0.560 6.560 8 N -0.615 5.615 9 C 0.101 3.899 10 C -0.140 4.140 11 C 0.100 3.900 12 C 0.132 3.868 13 C 0.131 3.869 14 N -0.616 5.616 15 C -0.245 4.245 16 H 0.056 0.944 17 C -0.026 4.026 18 N -0.955 5.955 19 Si 0.946 3.054 20 H -0.266 1.266 21 H -0.312 1.312 22 H -0.268 1.268 23 C 0.082 3.918 24 C 0.054 3.946 25 O -0.374 6.374 26 N -0.540 5.540 27 C 0.023 3.977 28 C 0.023 3.977 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.032 0.968 46 H 0.067 0.933 47 H 0.120 0.880 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.037 0.963 51 H 0.083 0.917 52 H 0.031 0.969 53 H 0.045 0.955 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -21.974 -11.931 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.216 4.216 4 C -0.032 4.032 5 H 0.090 0.910 6 C 0.327 3.673 7 O -0.438 6.438 8 N -0.350 5.350 9 C -0.021 4.021 10 C -0.178 4.178 11 C 0.058 3.942 12 C 0.009 3.991 13 C 0.005 3.995 14 N -0.342 5.342 15 C -0.375 4.375 16 H 0.074 0.926 17 C -0.221 4.221 18 N -0.600 5.600 19 Si 0.775 3.225 20 H -0.192 1.192 21 H -0.241 1.241 22 H -0.193 1.193 23 C -0.043 4.043 24 C -0.023 4.023 25 O -0.293 6.293 26 N -0.265 5.265 27 C -0.124 4.124 28 C -0.125 4.125 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.138 0.862 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.055 0.945 51 H 0.101 0.899 52 H 0.050 0.950 53 H 0.064 0.936 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.236 -22.170 -11.669 25.153 hybrid contribution 0.951 0.988 1.436 1.986 sum -1.286 -21.182 -10.232 23.559 Atomic orbital electron populations 1.21695 0.94675 1.02320 1.00590 1.21143 0.96818 0.95957 0.95756 1.22098 1.02006 0.95300 1.02215 1.21775 0.98289 0.89970 0.93116 0.91007 1.20507 0.84118 0.78258 0.84458 1.90676 1.20567 1.64889 1.67623 1.48671 1.18560 1.43530 1.24215 1.22706 0.83034 0.95157 1.01180 1.23159 1.02644 0.96858 0.95174 1.22118 0.90262 0.92026 0.89759 1.21543 0.96033 0.94930 0.86643 1.21502 0.89093 0.90696 0.98206 1.44387 1.21366 1.10128 1.58326 1.18742 1.36153 0.84603 0.97981 0.92642 1.25996 0.99767 0.94931 1.01427 1.69895 1.43726 1.09808 1.36619 0.85930 0.78894 0.75747 0.81909 1.19219 1.24113 1.19303 1.22120 0.93357 0.95129 0.93667 1.23142 0.86708 0.91794 1.00694 1.87716 1.32825 1.45175 1.63613 1.61748 1.60306 1.00348 1.04056 1.22550 0.98272 0.98936 0.92692 1.22414 0.98591 1.00037 0.91493 0.95270 0.91864 0.91916 0.87514 0.90542 0.90817 0.94189 0.90301 0.87747 0.90202 0.89177 0.90418 0.91296 0.91065 0.95239 0.92798 0.95050 0.91480 0.86201 0.91791 0.90069 0.94477 0.89885 0.95010 0.93574 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.51 71.98 0.61 -2.18 16 2 C -0.08 -1.30 2.43 -10.79 -0.03 -1.32 16 3 C -0.16 -2.60 7.68 71.98 0.55 -2.04 16 4 C 0.08 1.57 1.33 44.17 0.06 1.63 16 5 H 0.07 1.19 6.97 -2.39 -0.02 1.17 16 6 C 0.54 14.38 4.00 87.65 0.35 14.73 16 7 O -0.56 -19.29 14.73 -3.02 -0.04 -19.33 16 8 N -0.62 -15.83 2.88 -811.87 -2.34 -18.17 16 9 C 0.10 2.14 5.65 86.97 0.49 2.63 16 10 C -0.14 -3.79 5.93 31.88 0.19 -3.60 16 11 C 0.10 3.10 0.83 -10.22 -0.01 3.10 16 12 C 0.13 3.87 6.24 86.47 0.54 4.41 16 13 C 0.13 4.97 5.27 86.06 0.45 5.42 16 14 N -0.62 -27.61 2.64 -698.67 -1.85 -29.45 16 15 C -0.25 -13.24 10.08 84.03 0.85 -12.40 16 16 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 17 C -0.03 -1.44 5.32 84.86 0.45 -0.99 16 18 N -0.96 -58.08 13.97 21.65 0.30 -57.77 16 19 Si 0.95 45.31 24.32 68.60 1.67 46.98 16 20 H -0.27 -11.73 6.65 99.48 0.66 -11.07 16 21 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 22 H -0.27 -12.63 6.49 99.48 0.65 -11.99 16 23 C 0.08 3.27 4.36 86.35 0.38 3.64 16 24 C 0.05 1.66 6.76 72.08 0.49 2.15 16 25 O -0.37 -11.95 10.22 -148.98 -1.52 -13.47 16 26 N -0.54 -10.35 3.80 -927.74 -3.53 -13.87 16 27 C 0.02 0.27 9.23 127.69 1.18 1.45 16 28 C 0.02 0.45 9.12 127.69 1.16 1.61 16 29 H 0.03 0.78 6.74 -2.39 -0.02 0.76 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.39 7.41 -2.39 -0.02 1.38 16 32 H 0.11 1.26 6.51 -2.39 -0.02 1.25 16 33 H 0.08 0.98 6.68 -2.39 -0.02 0.96 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.04 0.85 6.16 -2.38 -0.01 0.84 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.74 4.42 -2.39 -0.01 1.73 16 38 H 0.08 2.29 7.86 -2.39 -0.02 2.27 16 39 H 0.09 2.52 5.98 -2.38 -0.01 2.50 16 40 H 0.08 2.35 7.79 -2.39 -0.02 2.33 16 41 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 42 H 0.07 2.72 7.75 -2.39 -0.02 2.70 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.03 1.28 6.72 -2.39 -0.02 1.26 16 46 H 0.07 2.85 5.10 -2.39 -0.01 2.84 16 47 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 48 H 0.06 1.89 6.14 -2.38 -0.01 1.88 16 49 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 50 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.08 0.84 6.45 -2.38 -0.02 0.83 16 52 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 53 H 0.05 1.19 6.35 -2.39 -0.02 1.17 16 54 H 0.09 1.38 8.07 -2.39 -0.02 1.36 16 Total: -1.00 -69.31 388.15 1.19 -68.13 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.78 Total: 18.73 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 7.72 Total: 18.23 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -7.41 Total: -119.27 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.57 Total: -32.80 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.67 Total: 46.98 kcal Total: -69.31 1.19 -68.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972419705.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.240 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds