Wall clock time and date at job start Sat Apr 11 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 C 1.52998 * 109.47322 * 120.00168 * 2 1 3 5 5 H 1.08999 * 109.47254 * 184.34675 * 4 2 1 6 6 C 1.50699 * 109.47216 * 304.34786 * 4 2 1 7 7 O 1.21281 * 119.99893 * 86.94743 * 6 4 2 8 8 N 1.34773 * 120.00223 * 266.95432 * 6 4 2 9 9 C 1.47534 * 125.64257 * 4.17534 * 8 6 4 10 10 C 1.55020 * 104.87855 * 203.96824 * 9 8 6 11 11 C 1.54506 * 101.56337 * 323.68782 * 10 9 8 12 12 C 1.47181 * 125.66332 * 184.18484 * 8 6 4 13 13 C 1.52522 * 110.06286 * 153.03863 * 11 10 9 14 14 N 1.47299 * 108.41817 * 72.17037 * 13 11 10 15 15 C 1.36932 * 121.06007 * 229.38425 * 14 13 11 16 16 H 1.08004 * 119.99711 * 148.74329 * 15 14 13 17 17 C 1.38811 * 120.00205 * 328.74565 * 15 14 13 18 18 N 1.31615 * 120.00328 * 351.57929 * 17 15 14 19 19 Si 1.86803 * 119.99864 * 171.57504 * 17 15 14 20 20 H 1.48498 * 109.47294 * 60.00155 * 19 17 15 21 21 H 1.48501 * 109.47046 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47369 * 299.99997 * 19 17 15 23 23 C 1.47166 * 117.87452 * 49.36694 * 14 13 11 24 24 C 1.53277 * 108.53070 * 308.85399 * 23 14 13 25 25 O 1.42067 * 110.34731 * 276.03018 * 11 10 9 26 26 N 1.46903 * 109.46893 * 64.34787 * 4 2 1 27 27 C 1.46895 * 111.00300 * 55.30676 * 26 4 2 28 28 C 1.46905 * 111.00050 * 179.25612 * 26 4 2 29 29 H 1.08996 * 109.46734 * 306.61508 * 1 2 3 30 30 H 1.09003 * 109.47161 * 66.61836 * 1 2 3 31 31 H 1.09005 * 109.46947 * 186.61692 * 1 2 3 32 32 H 1.09005 * 109.47215 * 240.00008 * 2 1 3 33 33 H 1.09003 * 109.47140 * 181.12667 * 3 2 1 34 34 H 1.08997 * 109.47310 * 301.12340 * 3 2 1 35 35 H 1.09001 * 109.47115 * 61.12904 * 3 2 1 36 36 H 1.09003 * 110.33283 * 85.13290 * 9 8 6 37 37 H 1.09004 * 110.39270 * 322.83637 * 9 8 6 38 38 H 1.08997 * 111.01199 * 205.60316 * 10 9 8 39 39 H 1.09001 * 111.01283 * 81.76427 * 10 9 8 40 40 H 1.08998 * 109.91173 * 59.14162 * 12 8 6 41 41 H 1.09001 * 110.06272 * 297.96202 * 12 8 6 42 42 H 1.08998 * 109.67424 * 191.90889 * 13 11 10 43 43 H 1.09005 * 109.67058 * 312.40229 * 13 11 10 44 44 H 0.96997 * 120.00674 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.62891 * 68.57207 * 23 14 13 46 46 H 1.09001 * 109.62386 * 188.94761 * 23 14 13 47 47 H 1.09005 * 109.50610 * 172.85880 * 24 23 14 48 48 H 1.08999 * 109.51293 * 293.00748 * 24 23 14 49 49 H 1.09002 * 109.47605 * 51.38063 * 27 26 4 50 50 H 1.08995 * 109.47773 * 171.38982 * 27 26 4 51 51 H 1.09009 * 109.46802 * 291.38606 * 27 26 4 52 52 H 1.09000 * 109.47117 * 56.04156 * 28 26 4 53 53 H 1.08992 * 109.47355 * 176.04869 * 28 26 4 54 54 H 1.09008 * 109.47077 * 296.05020 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1272 -0.6543 1.2890 6 6 1.4517 -0.0758 2.4773 7 8 0.3711 -0.4365 2.8933 8 7 2.1264 0.9023 3.1134 9 6 3.4021 1.4956 2.6695 10 6 4.0464 2.0651 3.9594 11 6 2.8055 2.5736 4.7268 12 6 1.7128 1.5554 4.3658 13 6 3.0763 2.5587 6.2278 14 7 4.0181 3.6470 6.5416 15 6 5.1343 3.4182 7.3010 16 1 6.0310 3.9955 7.1306 17 6 5.1133 2.4442 8.2899 18 7 3.9802 1.8568 8.6112 19 14 6.6935 1.9673 9.1647 20 1 7.2609 3.1583 9.8462 21 1 6.4042 0.9125 10.1692 22 1 7.6716 1.4513 8.1737 23 6 3.7213 4.9878 6.0125 24 6 3.4548 4.8697 4.5077 25 8 2.4501 3.8758 4.2837 26 7 1.6380 -2.1333 1.1978 27 6 2.1006 -2.7675 -0.0438 28 6 2.1266 -2.8630 2.3754 29 1 -0.3632 0.6129 0.8249 30 1 -0.3634 0.4078 -0.9433 31 1 -0.3633 -1.0209 0.1184 32 1 1.8934 -0.5138 -0.8900 33 1 3.1298 1.4426 -0.0202 34 1 1.6603 1.9621 -0.8797 35 1 1.6933 1.9505 0.8999 36 1 3.2185 2.2957 1.9523 37 1 4.0439 0.7317 2.2305 38 1 4.7259 2.8851 3.7276 39 1 4.5583 1.2822 4.5190 40 1 1.6206 0.8132 5.1587 41 1 0.7609 2.0671 4.2241 42 1 2.1436 2.7126 6.7704 43 1 3.5128 1.6013 6.5124 44 1 3.9655 1.1765 9.3025 45 1 2.8391 5.3907 6.5101 46 1 4.5722 5.6464 6.1861 47 1 3.1099 5.8294 4.1228 48 1 4.3733 4.5806 3.9970 49 1 3.1664 -2.5789 -0.1730 50 1 1.9258 -3.8420 0.0100 51 1 1.5530 -2.3522 -0.8899 52 1 1.7696 -2.3723 3.2808 53 1 1.7563 -3.8877 2.3473 54 1 3.2166 -2.8704 2.3718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972419706.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:00 Heat of formation + Delta-G solvation = -51.918622 kcal Electronic energy + Delta-G solvation = -32894.649060 eV Core-core repulsion = 28867.154104 eV Total energy + Delta-G solvation = -4027.494957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.92433 -40.66276 -38.34185 -37.39444 -36.25651 -35.41170 -33.26491 -32.86037 -30.90490 -29.54453 -28.79404 -28.48147 -27.96419 -27.07343 -25.27094 -24.19706 -23.34535 -23.05641 -21.81017 -20.48627 -19.42283 -18.96603 -18.39072 -17.62574 -17.45053 -17.08525 -16.46131 -16.14444 -16.10296 -15.79818 -15.62813 -15.31491 -15.23194 -15.00557 -14.75986 -14.54702 -14.24180 -14.05983 -13.87141 -13.64781 -13.57943 -13.41061 -13.22919 -13.12231 -12.97685 -12.77528 -12.77424 -12.65762 -12.58321 -12.47312 -12.28830 -12.18603 -11.95944 -11.86652 -11.80946 -11.79618 -11.63014 -11.16165 -10.79712 -10.63826 -10.48770 -9.70644 -9.29989 -8.66190 -7.89685 -5.43511 1.46872 1.47693 1.54928 1.58178 1.81759 2.46699 2.75398 2.91388 3.24348 3.32093 3.51562 3.56866 3.79463 3.84116 3.93225 4.01762 4.16913 4.23196 4.23602 4.30648 4.37080 4.38090 4.41932 4.49923 4.53186 4.55890 4.62653 4.67697 4.69450 4.74036 4.78616 4.80220 4.91359 4.94025 5.00891 5.03826 5.04689 5.06782 5.08096 5.13890 5.15089 5.18533 5.26035 5.39961 5.50688 5.52084 5.60583 5.87274 6.04095 6.31746 6.39072 6.52409 7.07302 7.16636 7.74168 8.31385 9.15868 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.003509 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.031376 B = 7978.127016 C = 8978.668504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 C -0.158 4.158 4 C 0.081 3.919 5 H 0.074 0.926 6 C 0.534 3.466 7 O -0.565 6.565 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.138 4.138 11 C 0.097 3.903 12 C 0.133 3.867 13 C 0.179 3.821 14 N -0.608 5.608 15 C -0.261 4.261 16 H 0.075 0.925 17 C -0.046 4.046 18 N -0.939 5.939 19 Si 0.969 3.031 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.272 1.272 23 C 0.102 3.898 24 C 0.053 3.947 25 O -0.382 6.382 26 N -0.542 5.542 27 C 0.024 3.976 28 C 0.025 3.975 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.062 0.938 42 H -0.012 1.012 43 H 0.065 0.935 44 H 0.250 0.750 45 H 0.011 0.989 46 H 0.075 0.925 47 H 0.119 0.881 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.038 0.962 53 H 0.084 0.916 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -3.515 -21.798 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.215 4.215 4 C -0.031 4.031 5 H 0.091 0.909 6 C 0.323 3.677 7 O -0.443 6.443 8 N -0.348 5.348 9 C -0.016 4.016 10 C -0.176 4.176 11 C 0.055 3.945 12 C 0.009 3.991 13 C 0.052 3.948 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.092 0.908 17 C -0.241 4.241 18 N -0.585 5.585 19 Si 0.797 3.203 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.198 1.198 23 C -0.023 4.023 24 C -0.025 4.025 25 O -0.301 6.301 26 N -0.267 5.267 27 C -0.123 4.123 28 C -0.123 4.123 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.006 0.994 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.098 0.902 51 H 0.102 0.898 52 H 0.057 0.943 53 H 0.103 0.897 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.137 -3.864 -21.568 21.912 hybrid contribution 1.307 -0.263 1.895 2.317 sum 1.170 -4.127 -19.673 20.136 Atomic orbital electron populations 1.21711 0.94923 1.02008 1.00699 1.21190 0.96540 0.96433 0.95543 1.22134 1.02154 0.94825 1.02396 1.21791 0.98311 0.89788 0.93185 0.90851 1.20643 0.84337 0.78126 0.84588 1.90671 1.22357 1.63480 1.67772 1.48706 1.24664 1.37079 1.24350 1.22735 0.83421 0.98650 0.96812 1.23081 0.97115 1.01597 0.95765 1.22272 0.93627 0.83340 0.95256 1.21457 0.97364 0.93655 0.86604 1.20856 0.91321 0.93413 0.89197 1.44242 1.25545 1.03546 1.59925 1.19467 0.90436 1.19055 1.10111 0.90759 1.25958 0.99400 1.01119 0.97653 1.70125 1.26167 1.29119 1.33049 0.85326 0.79473 0.77447 0.78094 1.20083 1.22511 1.19751 1.21818 0.98789 0.87601 0.94101 1.23195 0.92000 0.91818 0.95440 1.87681 1.43296 1.17100 1.82054 1.61673 1.60939 1.00191 1.03944 1.22541 0.98892 1.00084 0.90814 1.22386 0.97897 0.99507 0.92537 0.95721 0.91285 0.92340 0.87225 0.90475 0.90532 0.94049 0.88808 0.88444 0.88374 0.91416 0.92189 0.91935 0.99417 0.91668 0.94121 0.97106 0.90622 0.86283 0.91784 0.94124 0.90236 0.89812 0.94313 0.89708 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.41 71.98 0.61 -2.43 16 2 C -0.08 -1.41 2.34 -10.79 -0.03 -1.43 16 3 C -0.16 -2.57 7.46 71.98 0.54 -2.03 16 4 C 0.08 1.82 1.32 44.17 0.06 1.88 16 5 H 0.07 1.42 6.45 -2.39 -0.02 1.41 16 6 C 0.53 16.78 4.15 87.66 0.36 17.15 16 7 O -0.56 -22.53 15.28 -3.03 -0.05 -22.58 16 8 N -0.61 -19.08 2.93 -812.19 -2.38 -21.45 16 9 C 0.11 2.59 5.18 86.87 0.45 3.04 16 10 C -0.14 -4.32 5.91 31.80 0.19 -4.13 16 11 C 0.10 3.66 0.83 -10.22 -0.01 3.65 16 12 C 0.13 4.99 6.24 86.47 0.54 5.53 16 13 C 0.18 8.64 3.87 86.07 0.33 8.97 16 14 N -0.61 -29.53 2.93 -698.64 -2.05 -31.58 16 15 C -0.26 -13.65 9.64 84.03 0.81 -12.84 16 16 H 0.07 3.70 7.84 -2.91 -0.02 3.67 16 17 C -0.05 -2.48 5.11 84.86 0.43 -2.04 16 18 N -0.94 -55.04 11.04 21.65 0.24 -54.80 16 19 Si 0.97 43.43 29.56 68.60 2.03 45.45 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.10 4.04 6.72 86.34 0.58 4.62 16 24 C 0.05 1.64 6.76 72.07 0.49 2.13 16 25 O -0.38 -13.83 10.22 -148.97 -1.52 -15.35 16 26 N -0.54 -12.15 3.94 -927.72 -3.66 -15.80 16 27 C 0.02 0.34 8.89 127.69 1.13 1.47 16 28 C 0.02 0.58 9.28 127.69 1.18 1.77 16 29 H 0.02 0.70 6.90 -2.39 -0.02 0.68 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.45 7.56 -2.38 -0.02 1.43 16 32 H 0.11 1.40 6.28 -2.38 -0.01 1.39 16 33 H 0.08 0.96 7.54 -2.39 -0.02 0.95 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 0.90 5.53 -2.39 -0.01 0.89 16 36 H 0.09 2.02 5.97 -2.39 -0.01 2.00 16 37 H 0.10 1.87 6.66 -2.38 -0.02 1.85 16 38 H 0.10 2.88 5.99 -2.39 -0.01 2.87 16 39 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 40 H 0.06 2.49 7.79 -2.39 -0.02 2.47 16 41 H 0.06 2.46 8.06 -2.39 -0.02 2.44 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H 0.06 3.53 6.12 -2.38 -0.01 3.52 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 47 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 48 H 0.06 1.83 6.14 -2.39 -0.01 1.81 16 49 H 0.04 0.48 8.10 -2.39 -0.02 0.46 16 50 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 51 H 0.08 1.02 6.66 -2.38 -0.02 1.00 16 52 H 0.04 1.17 6.54 -2.39 -0.02 1.16 16 53 H 0.08 1.71 8.11 -2.39 -0.02 1.69 16 54 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -70.20 394.58 1.16 -69.04 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.88 Total: 21.77 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 7.67 Total: 25.30 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -7.84 Total: -123.64 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.57 Total: -37.93 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.20 1.16 -69.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972419706.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.124 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds