Wall clock time and date at job start Sat Apr 11 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47058 * 2 1 4 4 C 1.52999 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.47041 * 54.99845 * 4 3 2 6 6 C 1.53008 * 109.47442 * 295.00305 * 4 3 2 7 7 C 1.50693 * 109.47309 * 174.99910 * 4 3 2 8 8 O 1.21275 * 120.00351 * 31.59291 * 7 4 3 9 9 N 1.34785 * 120.00088 * 211.59094 * 7 4 3 10 10 C 1.47019 * 125.64827 * 185.12797 * 9 7 4 11 11 C 1.54321 * 107.27073 * 181.02253 * 10 9 7 12 12 C 1.55163 * 102.94216 * 22.19258 * 11 10 9 13 13 C 1.53000 * 111.00273 * 82.57284 * 12 11 10 14 14 C 1.53001 * 111.00410 * 206.38286 * 12 11 10 15 15 N 1.46890 * 109.47378 * 298.54702 * 14 12 11 16 16 C 1.46899 * 111.00041 * 179.97438 * 15 14 12 17 17 C 1.50711 * 109.47125 * 179.97438 * 16 15 14 18 18 O 1.21288 * 119.99893 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99881 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00055 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99638 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00475 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99527 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00472 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47142 * 59.99939 * 24 22 20 26 26 H 1.48499 * 109.47657 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47171 * 300.00358 * 24 22 20 28 28 C 1.47420 * 125.64627 * 4.82059 * 9 7 4 29 29 H 1.09001 * 109.46867 * 60.00025 * 1 2 3 30 30 H 1.09002 * 109.46823 * 300.00048 * 1 2 3 31 31 H 1.09006 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46867 * 119.99975 * 2 1 3 33 33 H 1.09001 * 109.47015 * 239.99435 * 2 1 3 34 34 H 1.09001 * 109.47261 * 299.99734 * 3 2 1 35 35 H 1.09002 * 109.47343 * 60.00270 * 3 2 1 36 36 H 1.09008 * 109.46672 * 305.26928 * 6 4 3 37 37 H 1.09000 * 109.47033 * 65.26215 * 6 4 3 38 38 H 1.08997 * 109.47448 * 185.27044 * 6 4 3 39 39 H 1.08997 * 109.88464 * 300.43859 * 10 9 7 40 40 H 1.09002 * 109.88330 * 61.60705 * 10 9 7 41 41 H 1.09004 * 110.72061 * 140.55363 * 11 10 9 42 42 H 1.09002 * 110.72015 * 263.82871 * 11 10 9 43 43 H 1.08992 * 109.47418 * 61.45669 * 13 12 11 44 44 H 1.09002 * 109.46974 * 181.45676 * 13 12 11 45 45 H 1.08998 * 109.46953 * 301.45344 * 13 12 11 46 46 H 1.09005 * 109.46772 * 58.55034 * 14 12 11 47 47 H 1.08996 * 109.47042 * 178.54600 * 14 12 11 48 48 H 1.00905 * 111.00056 * 303.95537 * 15 14 12 49 49 H 1.08998 * 109.47545 * 299.99869 * 16 15 14 50 50 H 1.09006 * 109.47265 * 60.00355 * 16 15 14 51 51 H 0.96997 * 119.99942 * 359.97438 * 19 17 16 52 52 H 0.96997 * 119.99722 * 180.02562 * 23 22 20 53 53 H 1.09006 * 110.37028 * 274.74729 * 28 9 7 54 54 H 1.09003 * 110.36874 * 37.06698 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8528 -0.8410 6 6 4.0796 0.8329 1.3083 7 6 4.0724 2.8578 -0.1232 8 8 3.4310 3.7724 0.3487 9 7 5.2348 3.1072 -0.7584 10 6 5.8920 4.4184 -0.8591 11 6 7.1748 4.2250 -1.6948 12 6 6.8761 2.9298 -2.4953 13 6 6.0419 3.2352 -3.7410 14 6 8.1708 2.2057 -2.8699 15 7 8.9885 3.0757 -3.7254 16 6 10.2428 2.4121 -4.1052 17 6 11.0531 3.3328 -4.9811 18 8 10.6277 4.4336 -5.2609 19 7 12.2504 2.9329 -5.4534 20 6 12.9877 3.7706 -6.2497 21 1 12.6089 4.7509 -6.4988 22 6 14.2223 3.3586 -6.7362 23 7 14.6829 2.1656 -6.4334 24 14 15.2266 4.4997 -7.8218 25 1 15.5326 5.7482 -7.0781 26 1 16.4948 3.8292 -8.2053 27 1 14.4510 4.8294 -9.0445 28 6 6.0608 2.1091 -1.4618 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.6408 1.3652 2.1524 37 1 3.7953 -0.2183 1.3542 38 1 5.1654 0.9179 1.3500 39 1 5.2298 5.1279 -1.3553 40 1 6.1491 4.7816 0.1360 41 1 7.3271 5.0682 -2.3685 42 1 8.0402 4.0867 -1.0465 43 1 6.5990 3.9048 -4.3962 44 1 5.8251 2.3069 -4.2696 45 1 5.1073 3.7113 -3.4446 46 1 8.7256 1.9615 -1.9639 47 1 7.9314 1.2883 -3.4077 48 1 8.4725 3.3687 -4.5415 49 1 10.8120 2.1697 -3.2078 50 1 10.0183 1.4959 -4.6516 51 1 12.5907 2.0527 -5.2293 52 1 15.5449 1.8781 -6.7728 53 1 6.7281 1.6071 -0.7611 54 1 5.4270 1.3823 -1.9701 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270697772.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:35 Heat of formation + Delta-G solvation = -117.611815 kcal Electronic energy + Delta-G solvation = -29702.065489 eV Core-core repulsion = 25671.721861 eV Total energy + Delta-G solvation = -4030.343628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.49977 -40.16083 -39.44764 -36.94478 -36.57729 -35.80091 -33.67293 -33.20636 -32.74939 -30.74028 -28.79208 -27.95470 -27.58639 -26.55583 -25.43327 -24.36255 -23.23115 -21.65722 -21.08093 -20.13551 -19.90936 -19.78778 -18.25488 -17.74126 -17.11761 -16.95893 -16.47922 -16.40218 -16.22982 -15.99847 -15.40269 -15.34335 -15.19302 -14.90797 -14.84488 -14.34294 -14.23115 -14.06298 -13.96573 -13.50494 -13.44142 -13.40085 -13.30681 -13.13448 -13.07088 -12.90753 -12.79288 -12.77359 -12.41439 -12.37481 -12.15421 -12.11741 -11.91103 -11.84834 -11.68815 -11.58708 -11.50561 -11.47229 -11.39811 -10.72059 -10.29832 -9.98797 -9.68158 -9.22031 -8.44727 -5.93080 1.40902 1.42995 1.53411 1.57980 1.95301 2.09454 2.30730 2.92660 3.23102 3.38069 3.43987 3.73440 3.75063 3.81710 3.84550 3.98132 4.20644 4.23424 4.28267 4.31410 4.32589 4.36738 4.39340 4.54917 4.57681 4.62551 4.64329 4.71664 4.74235 4.79815 4.82907 4.87987 4.90136 4.93613 4.98482 5.00766 5.04864 5.10998 5.17461 5.20320 5.24400 5.29463 5.36059 5.41573 5.42685 5.42875 5.50058 5.92910 6.15803 6.46308 6.51652 6.63157 7.11917 7.15310 7.59965 8.15585 8.72293 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028229 B = 0.001681 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.643505 B =16654.215517 C =16997.636871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.101 4.101 5 H 0.114 0.886 6 C -0.137 4.137 7 C 0.524 3.476 8 O -0.591 6.591 9 N -0.614 5.614 10 C 0.106 3.894 11 C -0.103 4.103 12 C -0.064 4.064 13 C -0.137 4.137 14 C 0.078 3.922 15 N -0.680 5.680 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.111 3.889 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.343 0.657 49 H 0.105 0.895 50 H 0.068 0.932 51 H 0.397 0.603 52 H 0.277 0.723 53 H 0.092 0.908 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.806 -11.041 13.334 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.122 4.122 5 H 0.132 0.868 6 C -0.194 4.194 7 C 0.315 3.685 8 O -0.472 6.472 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.141 4.141 12 C -0.065 4.065 13 C -0.194 4.194 14 C -0.051 4.051 15 N -0.314 5.314 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.212 5.212 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.011 4.011 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.070 0.930 48 H 0.163 0.837 49 H 0.123 0.877 50 H 0.086 0.914 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.111 0.889 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.028 -9.612 13.908 27.768 hybrid contribution 0.563 0.132 -1.150 1.287 sum -21.465 -9.479 12.758 26.709 Atomic orbital electron populations 1.21788 0.95838 1.02107 1.01532 1.21555 0.95942 0.94907 1.03220 1.21449 0.92400 0.98201 1.01802 1.21386 0.97437 0.90961 1.02385 0.86813 1.21748 1.01343 1.02155 0.94175 1.21099 0.78813 0.92330 0.76275 1.90668 1.57471 1.48591 1.50471 1.48613 1.21909 1.10648 1.53464 1.21945 0.94176 0.85607 0.99983 1.22523 0.95430 0.98310 0.97804 1.21701 0.94577 0.95286 0.94978 1.21740 0.99048 1.02212 0.96419 1.21932 0.91880 0.93448 0.97812 1.60042 1.05394 1.41515 1.24409 1.21520 0.92058 0.94200 0.98814 1.20988 0.83059 0.88958 0.84546 1.90493 1.72145 1.24590 1.63832 1.41929 1.16925 1.17418 1.44885 1.19621 1.00648 0.99308 1.26880 0.90428 1.25990 0.97759 0.98176 0.99204 1.69662 1.21031 1.19221 1.46110 0.85023 0.77401 0.77889 0.78229 1.19887 1.19512 1.19759 1.22601 0.93760 0.90838 0.93909 0.93209 0.93201 0.91651 0.90560 0.90784 0.93093 0.92749 0.93337 0.88769 0.91838 0.92961 0.92253 0.90796 0.90157 0.92878 0.91003 0.93104 0.89525 0.93011 0.83714 0.87675 0.91441 0.76945 0.91348 0.88941 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.11 5.69 30.59 0.17 -0.93 16 3 C -0.10 -1.46 4.21 30.59 0.13 -1.33 16 4 C -0.10 -1.36 2.38 -11.54 -0.03 -1.38 16 5 H 0.11 0.98 6.46 -2.38 -0.02 0.97 16 6 C -0.14 -1.46 8.80 71.98 0.63 -0.83 16 7 C 0.52 11.34 6.88 87.65 0.60 11.95 16 8 O -0.59 -18.29 16.64 -3.01 -0.05 -18.34 16 9 N -0.61 -11.46 3.31 -811.37 -2.69 -14.15 16 10 C 0.11 2.23 6.53 86.73 0.57 2.79 16 11 C -0.10 -2.03 5.63 31.78 0.18 -1.86 16 12 C -0.06 -1.04 0.73 -50.71 -0.04 -1.08 16 13 C -0.14 -2.38 8.24 71.98 0.59 -1.78 16 14 C 0.08 1.36 4.72 86.31 0.41 1.77 16 15 N -0.68 -18.54 5.82 -517.93 -3.01 -21.56 16 16 C 0.07 2.05 6.17 85.56 0.53 2.58 16 17 C 0.44 19.94 7.82 87.66 0.69 20.63 16 18 O -0.62 -33.65 15.78 -3.05 -0.05 -33.70 16 19 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 23 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 24 Si 0.99 42.48 29.55 68.60 2.03 44.50 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.11 1.38 5.52 86.93 0.48 1.86 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.56 6.68 -2.39 -0.02 0.55 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 1.00 8.02 -2.39 -0.02 0.98 16 36 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.09 0.58 6.83 -2.39 -0.02 0.56 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.73 8.05 -2.38 -0.02 1.71 16 42 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 43 H 0.05 1.12 6.86 -2.39 -0.02 1.10 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 0.95 7.89 -2.39 -0.02 0.93 16 46 H 0.09 1.35 8.10 -2.38 -0.02 1.33 16 47 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.34 10.17 6.75 -89.69 -0.61 9.56 16 49 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 50 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 51 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 52 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 53 H 0.09 0.87 8.01 -2.38 -0.02 0.86 16 54 H 0.10 0.84 6.78 -2.39 -0.02 0.83 16 Total: -1.00 -72.30 426.85 1.34 -70.96 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.46 Total: 37.59 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.91 Total: 13.48 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -7.04 Total: -114.50 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.10 Total: -52.03 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -72.30 1.34 -70.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270697772.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.654 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds