Wall clock time and date at job start Sat Apr 11 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.52996 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47363 * 304.99680 * 4 3 2 6 6 C 1.53002 * 109.47204 * 64.99923 * 4 3 2 7 7 C 1.50701 * 109.47082 * 184.99860 * 4 3 2 8 8 O 1.21277 * 120.00436 * 332.77597 * 7 4 3 9 9 N 1.34778 * 119.99862 * 152.77955 * 7 4 3 10 10 C 1.48151 * 127.84023 * 354.54700 * 9 7 4 11 11 C 1.54388 * 104.61712 * 140.39219 * 10 9 7 12 12 C 1.54278 * 104.96251 * 23.86435 * 11 10 9 13 13 C 1.52997 * 110.34584 * 241.01990 * 12 11 10 14 14 C 1.53003 * 110.33962 * 118.86757 * 12 11 10 15 15 N 1.46902 * 109.47092 * 61.45988 * 14 12 11 16 16 C 1.46895 * 111.00180 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47135 * 179.97438 * 16 15 14 18 18 O 1.21296 * 120.00133 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00163 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00560 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99618 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47178 * 89.99687 * 24 22 20 26 26 H 1.48501 * 109.47053 * 209.99530 * 24 22 20 27 27 H 1.48495 * 109.47242 * 329.99987 * 24 22 20 28 28 C 1.48144 * 127.83759 * 174.51717 * 9 7 4 29 29 H 1.08997 * 109.46930 * 300.00467 * 1 2 3 30 30 H 1.09002 * 109.46589 * 59.99923 * 1 2 3 31 31 H 1.08994 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47368 * 239.99656 * 2 1 3 33 33 H 1.09006 * 109.46863 * 119.99651 * 2 1 3 34 34 H 1.09005 * 109.47213 * 59.99744 * 3 2 1 35 35 H 1.09002 * 109.46801 * 300.00191 * 3 2 1 36 36 H 1.08996 * 109.47387 * 182.91610 * 6 4 3 37 37 H 1.09000 * 109.47059 * 302.91978 * 6 4 3 38 38 H 1.08998 * 109.47312 * 62.91690 * 6 4 3 39 39 H 1.09003 * 110.40423 * 21.60897 * 10 9 7 40 40 H 1.08996 * 110.40245 * 259.17786 * 10 9 7 41 41 H 1.09003 * 110.33867 * 264.99644 * 11 10 9 42 42 H 1.09000 * 110.34026 * 142.73909 * 11 10 9 43 43 H 1.08995 * 109.47485 * 297.12444 * 13 12 11 44 44 H 1.09001 * 109.46717 * 57.12686 * 13 12 11 45 45 H 1.09007 * 109.47183 * 177.12472 * 13 12 11 46 46 H 1.09002 * 109.47539 * 301.45579 * 14 12 11 47 47 H 1.09007 * 109.46927 * 181.45082 * 14 12 11 48 48 H 1.00897 * 111.00251 * 56.04061 * 15 14 12 49 49 H 1.08992 * 109.47314 * 299.99927 * 16 15 14 50 50 H 1.09007 * 109.47230 * 59.99807 * 16 15 14 51 51 H 0.97004 * 120.00261 * 0.02562 * 19 17 16 52 52 H 0.96995 * 120.00257 * 180.02562 * 23 22 20 53 53 H 1.09008 * 110.40609 * 100.82688 * 28 9 7 54 54 H 1.08999 * 110.40877 * 338.38955 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 4.0723 2.8579 0.1244 8 8 3.3941 3.7794 -0.2777 9 7 5.2753 3.0997 0.6820 10 6 6.1905 2.1286 1.3256 11 6 7.6007 2.5613 0.8701 12 6 7.4638 4.0568 0.5168 13 6 7.8021 4.2883 -0.9573 14 6 8.3764 4.8999 1.4097 15 7 9.7752 4.5108 1.1865 16 6 10.6825 5.3017 2.0287 17 6 12.1050 4.8749 1.7732 18 8 12.3400 3.9984 0.9684 19 7 13.1162 5.4678 2.4383 20 6 14.4105 5.0800 2.2056 21 1 14.6197 4.2995 1.4889 22 6 15.4529 5.6909 2.8916 23 7 15.1983 6.6402 3.7639 24 14 17.2164 5.1628 2.5739 25 1 17.7884 5.9827 1.4757 26 1 18.0209 5.3566 3.8069 27 1 17.2417 3.7296 2.1863 28 6 5.9827 4.3968 0.7898 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.1693 0.7850 -1.2843 37 1 3.6752 -0.1727 -1.4210 38 1 3.7610 1.4510 -2.1451 39 1 5.9738 1.1170 0.9821 40 1 6.1063 2.1887 2.4107 41 1 7.9071 1.9912 -0.0070 42 1 8.3181 2.4273 1.6797 43 1 8.8424 4.0179 -1.1381 44 1 7.1531 3.6725 -1.5800 45 1 7.6517 5.3394 -1.2039 46 1 8.1156 4.7346 2.4551 47 1 8.2495 5.9548 1.1659 48 1 10.0226 4.5937 0.2119 49 1 10.5714 6.3591 1.7889 50 1 10.4378 5.1395 3.0785 51 1 12.9284 6.1691 3.0816 52 1 15.9261 7.0669 4.2425 53 1 5.8663 4.8112 1.7913 54 1 5.6095 5.0966 0.0421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270697775.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:43 Heat of formation + Delta-G solvation = -114.306855 kcal Electronic energy + Delta-G solvation = -29674.358340 eV Core-core repulsion = 25644.158027 eV Total energy + Delta-G solvation = -4030.200314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.42883 -40.18029 -39.45843 -36.90837 -36.61662 -35.81798 -33.78605 -33.20974 -32.62380 -30.59263 -28.86755 -28.06801 -27.59082 -26.67625 -25.18213 -23.98332 -23.74806 -21.68434 -21.11278 -20.22160 -19.89104 -19.61260 -18.21845 -17.70223 -17.13142 -16.90908 -16.55478 -16.40795 -16.23313 -15.97129 -15.48862 -15.39357 -15.21471 -14.94633 -14.65895 -14.39473 -14.16931 -14.08512 -13.97128 -13.56168 -13.51287 -13.39360 -13.24255 -13.11880 -13.05720 -12.85091 -12.79455 -12.77240 -12.40313 -12.23780 -12.16970 -12.11506 -11.88694 -11.84972 -11.73249 -11.58846 -11.48568 -11.44708 -11.40019 -10.71573 -10.31043 -9.99534 -9.74092 -9.28177 -8.45216 -5.93773 1.39015 1.42962 1.55459 1.57911 1.93685 2.08013 2.30373 2.93712 3.22493 3.37663 3.56141 3.66182 3.75816 3.79130 3.87685 3.96581 4.21401 4.26674 4.29466 4.33993 4.36731 4.37669 4.40635 4.51468 4.57198 4.60199 4.62476 4.70491 4.71161 4.76306 4.79073 4.85842 4.87378 4.92334 4.96356 4.99925 5.01273 5.09891 5.13684 5.20140 5.25647 5.31930 5.40375 5.42453 5.43075 5.48448 5.50557 5.90805 6.12546 6.42277 6.56223 6.62047 7.12126 7.14529 7.58780 8.13938 8.72127 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033536 B = 0.001638 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.724113 B =17091.907410 C =17337.396177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.101 4.101 5 H 0.113 0.887 6 C -0.139 4.139 7 C 0.531 3.469 8 O -0.590 6.590 9 N -0.621 5.621 10 C 0.099 3.901 11 C -0.114 4.114 12 C -0.063 4.063 13 C -0.137 4.137 14 C 0.075 3.925 15 N -0.674 5.674 16 C 0.064 3.936 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.114 3.886 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.343 0.657 49 H 0.063 0.937 50 H 0.106 0.894 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.082 0.918 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.543 -10.409 -3.717 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.122 4.122 5 H 0.131 0.869 6 C -0.196 4.196 7 C 0.322 3.678 8 O -0.471 6.471 9 N -0.354 5.354 10 C -0.022 4.022 11 C -0.152 4.152 12 C -0.064 4.064 13 C -0.194 4.194 14 C -0.054 4.054 15 N -0.307 5.307 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.009 4.009 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.056 0.944 48 H 0.163 0.837 49 H 0.081 0.919 50 H 0.124 0.876 51 H 0.230 0.770 52 H 0.086 0.914 53 H 0.100 0.900 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.745 -10.943 -3.939 28.250 hybrid contribution 1.001 1.539 -0.256 1.853 sum -24.744 -9.404 -4.195 26.802 Atomic orbital electron populations 1.21780 0.95723 1.02107 1.01592 1.21573 0.96037 0.94994 1.03136 1.21422 0.92269 0.98095 1.01907 1.21347 0.97503 0.91187 1.02131 0.86920 1.21769 1.01590 1.01911 0.94331 1.20986 0.79061 0.92254 0.75483 1.90669 1.56956 1.48054 1.51417 1.49114 1.17928 1.11050 1.57271 1.22687 0.87700 0.93617 0.98242 1.22504 0.96238 0.93821 1.02660 1.21363 0.92956 0.96482 0.95621 1.21838 1.01454 1.01489 0.94625 1.22024 0.86556 0.96600 1.00205 1.60109 1.01565 1.57518 1.11486 1.21530 0.88784 0.96212 1.00274 1.20897 0.87998 0.84643 0.83844 1.90491 1.85648 1.35208 1.39493 1.41942 1.05548 1.35334 1.38343 1.19669 0.83244 1.20010 1.23401 0.90294 1.26010 1.03827 0.95894 0.95461 1.69669 1.34837 1.25321 1.26329 0.84946 0.76968 0.78535 0.78005 1.19733 1.19616 1.19747 1.22343 0.90112 0.86361 1.02076 0.93084 0.93190 0.91681 0.90695 0.90827 0.92875 0.92755 0.91753 0.88904 0.93562 0.88214 0.89428 0.91235 0.89448 0.92398 0.92817 0.92607 0.89495 0.94422 0.83739 0.91918 0.87579 0.77009 0.91359 0.89957 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.16 5.69 30.59 0.17 -0.98 16 3 C -0.10 -1.46 4.16 30.59 0.13 -1.33 16 4 C -0.10 -1.42 2.15 -11.54 -0.02 -1.44 16 5 H 0.11 1.08 6.98 -2.38 -0.02 1.06 16 6 C -0.14 -1.66 9.00 71.98 0.65 -1.02 16 7 C 0.53 11.50 6.99 87.66 0.61 12.11 16 8 O -0.59 -17.95 16.54 -3.02 -0.05 -18.00 16 9 N -0.62 -11.45 3.32 -807.93 -2.68 -14.13 16 10 C 0.10 1.32 6.75 86.53 0.58 1.91 16 11 C -0.11 -1.98 6.06 31.50 0.19 -1.79 16 12 C -0.06 -1.18 0.82 -51.28 -0.04 -1.22 16 13 C -0.14 -2.78 7.94 71.98 0.57 -2.21 16 14 C 0.08 1.54 4.40 86.30 0.38 1.92 16 15 N -0.67 -19.18 5.58 -517.93 -2.89 -22.08 16 16 C 0.06 2.07 6.17 85.56 0.53 2.60 16 17 C 0.44 20.23 7.82 87.66 0.69 20.92 16 18 O -0.62 -33.52 15.78 -3.08 -0.05 -33.57 16 19 N -0.57 -28.94 5.29 -306.99 -1.62 -30.56 16 20 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 23 N -0.92 -49.22 13.05 21.66 0.28 -48.93 16 24 Si 0.99 42.52 29.55 68.60 2.03 44.54 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 C 0.11 2.17 6.13 86.54 0.53 2.70 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.60 6.50 -2.39 -0.02 0.59 16 33 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 1.00 8.02 -2.39 -0.02 0.99 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.72 6.43 -2.39 -0.02 0.71 16 38 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.93 6.91 -2.39 -0.02 0.92 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.28 7.71 -2.39 -0.02 1.26 16 42 H 0.09 1.75 7.49 -2.39 -0.02 1.73 16 43 H 0.06 1.31 6.63 -2.39 -0.02 1.30 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 47 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.34 10.62 6.56 -89.70 -0.59 10.03 16 49 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 51 H 0.40 18.95 7.90 -92.70 -0.73 18.22 16 52 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 53 H 0.08 1.40 7.85 -2.38 -0.02 1.38 16 54 H 0.07 1.48 7.65 -2.39 -0.02 1.47 16 Total: -1.00 -70.98 425.66 1.54 -69.43 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.44 Total: 40.04 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.96 Total: 13.25 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -6.91 Total: -115.70 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.10 Total: -51.57 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.98 1.54 -69.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270697775.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.872 kcal (2) G-P(sol) polarization free energy of solvation -70.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds