Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46791 * 2 1 4 4 C 1.52998 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47771 * 54.99742 * 4 3 2 6 6 C 1.53001 * 109.47059 * 294.99538 * 4 3 2 7 7 C 1.50703 * 109.46857 * 175.00261 * 4 3 2 8 8 O 1.21281 * 119.99905 * 359.97438 * 7 4 3 9 9 N 1.34778 * 120.00084 * 179.97438 * 7 4 3 10 10 C 1.48144 * 127.83809 * 359.96811 * 9 7 4 11 11 C 1.54384 * 104.61621 * 140.39719 * 10 9 7 12 12 C 1.54285 * 104.96087 * 23.86817 * 11 10 9 13 13 C 1.53005 * 110.34071 * 241.02262 * 12 11 10 14 14 C 1.53004 * 110.34139 * 118.87204 * 12 11 10 15 15 N 1.46895 * 109.47035 * 61.45385 * 14 12 11 16 16 C 1.46906 * 110.99789 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 14 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47151 * 90.00176 * 24 22 20 26 26 H 1.48498 * 109.47184 * 210.00131 * 24 22 20 27 27 H 1.48501 * 109.47470 * 330.00337 * 24 22 20 28 28 C 1.48148 * 127.83690 * 179.97438 * 9 7 4 29 29 H 1.09001 * 109.47331 * 299.99665 * 1 2 3 30 30 H 1.08999 * 109.47614 * 60.00133 * 1 2 3 31 31 H 1.09008 * 109.46912 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47331 * 240.00335 * 2 1 3 33 33 H 1.08999 * 109.47614 * 119.99867 * 2 1 3 34 34 H 1.09001 * 109.46909 * 60.00077 * 3 2 1 35 35 H 1.08999 * 109.46933 * 300.00284 * 3 2 1 36 36 H 1.09005 * 109.47105 * 60.00462 * 6 4 3 37 37 H 1.08997 * 109.47580 * 180.02562 * 6 4 3 38 38 H 1.09003 * 109.47221 * 300.00855 * 6 4 3 39 39 H 1.09002 * 110.40872 * 21.61383 * 10 9 7 40 40 H 1.08995 * 110.50838 * 259.23367 * 10 9 7 41 41 H 1.09002 * 110.34264 * 264.99582 * 11 10 9 42 42 H 1.09003 * 110.34181 * 142.74171 * 11 10 9 43 43 H 1.08998 * 109.47215 * 297.12263 * 13 12 11 44 44 H 1.08993 * 109.47054 * 57.12493 * 13 12 11 45 45 H 1.09000 * 109.46766 * 177.12791 * 13 12 11 46 46 H 1.08996 * 109.46863 * 301.45227 * 14 12 11 47 47 H 1.09002 * 109.46661 * 181.45404 * 14 12 11 48 48 H 1.00899 * 111.00672 * 56.04786 * 15 14 12 49 49 H 1.08992 * 109.47459 * 299.99826 * 16 15 14 50 50 H 1.09004 * 109.47040 * 59.99976 * 16 15 14 51 51 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 52 52 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 53 53 H 1.08996 * 110.40744 * 100.82223 * 28 9 7 54 54 H 1.08994 * 110.40708 * 338.38133 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8426 6 6 4.0804 0.8329 1.3065 7 6 4.0721 2.8581 -0.1244 8 8 3.2839 3.7764 -0.2047 9 7 5.3972 3.1036 -0.1459 10 6 6.5045 2.1233 -0.0595 11 6 7.5604 2.6391 -1.0608 12 6 7.2784 4.1500 -1.1940 13 6 6.9195 4.4986 -2.6399 14 6 8.4938 4.9602 -0.7385 15 7 9.6443 4.6397 -1.5938 16 6 10.8322 5.4013 -1.1853 17 6 11.9896 5.0465 -2.0829 18 8 11.8395 4.2390 -2.9755 19 7 13.1914 5.6264 -1.8940 20 6 14.2441 5.3040 -2.7109 21 1 14.1105 4.5850 -3.5057 22 6 15.4830 5.9024 -2.5164 23 7 15.6455 6.7776 -1.5497 24 14 16.9176 5.4626 -3.6290 25 1 16.9364 6.3784 -4.7978 26 1 18.1892 5.5975 -2.8740 27 1 16.7677 4.0622 -4.0999 28 6 6.0767 4.4150 -0.2611 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.7172 -0.1909 1.3961 37 1 5.1704 0.8333 1.3063 38 1 3.7173 1.4222 2.1485 39 1 6.1578 1.1316 -0.3500 40 1 6.9165 2.1005 0.9493 41 1 7.4415 2.1449 -2.0250 42 1 8.5648 2.4740 -0.6708 43 1 7.7685 4.2804 -3.2877 44 1 6.0608 3.9055 -2.9542 45 1 6.6737 5.5583 -2.7079 46 1 8.7295 4.7110 0.2961 47 1 8.2701 6.0243 -0.8141 48 1 9.4283 4.8013 -2.5660 49 1 10.6246 6.4683 -1.2643 50 1 11.0844 5.1556 -0.1537 51 1 13.3113 6.2725 -1.1804 52 1 16.5105 7.1950 -1.4137 53 1 6.4214 4.7516 0.7166 54 1 5.4072 5.1524 -0.7037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270697776.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -112.943962 kcal Electronic energy + Delta-G solvation = -29676.720788 eV Core-core repulsion = 25646.579574 eV Total energy + Delta-G solvation = -4030.141214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.45543 -40.17812 -39.43848 -36.89850 -36.64328 -35.82324 -33.88525 -33.21839 -32.53416 -30.60449 -28.86020 -28.06965 -27.49115 -26.65823 -25.24218 -24.04101 -23.64439 -21.65880 -21.10966 -20.24631 -19.92413 -19.71194 -18.08240 -17.73439 -17.10303 -16.87376 -16.63188 -16.43105 -16.29475 -15.93056 -15.42726 -15.36211 -15.20963 -14.88956 -14.71908 -14.41097 -14.23503 -14.11980 -13.83023 -13.71254 -13.47071 -13.29487 -13.24002 -13.11397 -13.06248 -12.85106 -12.80024 -12.70867 -12.40352 -12.23727 -12.15944 -12.11483 -11.86388 -11.78911 -11.74372 -11.54482 -11.48350 -11.44265 -11.40044 -10.73500 -10.31030 -9.99512 -9.73545 -9.28015 -8.45242 -5.93733 1.38996 1.42961 1.55441 1.60549 1.94235 2.08090 2.30392 2.93802 3.22493 3.37668 3.56661 3.65879 3.76654 3.79694 3.87641 3.96258 4.22287 4.25621 4.29866 4.34999 4.37121 4.38017 4.40186 4.51634 4.56630 4.60769 4.64266 4.70079 4.71263 4.76939 4.79942 4.89076 4.89896 4.93064 4.97826 4.99887 5.03061 5.09692 5.13793 5.23863 5.25322 5.31825 5.40656 5.42561 5.43733 5.48424 5.51379 5.90959 6.12743 6.42134 6.56892 6.62134 7.12823 7.14562 7.58833 8.14061 8.72098 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.001633 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.697359 B =17147.148231 C =17356.792223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.101 4.101 5 H 0.112 0.888 6 C -0.147 4.147 7 C 0.530 3.470 8 O -0.591 6.591 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.116 4.116 12 C -0.063 4.063 13 C -0.137 4.137 14 C 0.075 3.925 15 N -0.674 5.674 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.114 3.886 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.343 0.657 49 H 0.063 0.937 50 H 0.107 0.893 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.084 0.916 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.311 -10.984 8.207 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.135 4.135 4 C -0.122 4.122 5 H 0.130 0.870 6 C -0.204 4.204 7 C 0.321 3.679 8 O -0.472 6.472 9 N -0.352 5.352 10 C -0.022 4.022 11 C -0.154 4.154 12 C -0.065 4.065 13 C -0.194 4.194 14 C -0.054 4.054 15 N -0.307 5.307 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.056 0.944 48 H 0.162 0.838 49 H 0.081 0.919 50 H 0.125 0.875 51 H 0.230 0.770 52 H 0.086 0.914 53 H 0.102 0.898 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.593 -11.512 8.007 28.310 hybrid contribution 0.726 1.580 -0.694 1.872 sum -23.867 -9.931 7.313 26.866 Atomic orbital electron populations 1.21781 0.95783 1.02083 1.01560 1.21575 0.96014 0.95076 1.03074 1.21390 0.92466 0.97822 1.01839 1.21330 0.97389 0.91195 1.02318 0.87008 1.21959 1.02326 1.01994 0.94095 1.21003 0.80029 0.92316 0.74576 1.90674 1.55492 1.48363 1.52688 1.49059 1.04852 1.09714 1.71553 1.22738 0.85700 0.93173 1.00571 1.22535 0.99658 0.93415 0.99802 1.21369 0.93267 0.96541 0.95285 1.21836 1.01081 1.01226 0.95271 1.22022 0.88459 0.97164 0.97718 1.60115 1.03154 1.59485 1.07939 1.21533 0.89275 0.96837 0.99148 1.20904 0.84913 0.84072 0.87506 1.90491 1.84487 1.38541 1.37348 1.41939 1.08669 1.39478 1.31070 1.19669 0.89578 1.24296 1.12793 0.90307 1.26010 1.00765 0.95809 0.98596 1.69669 1.26363 1.28314 1.31794 0.84948 0.77052 0.78588 0.77879 1.19746 1.19599 1.19756 1.22355 0.92693 0.86146 0.99719 0.92999 0.93357 0.91669 0.91221 0.90387 0.92727 0.93228 0.89254 0.90651 0.93086 0.88189 0.89153 0.91418 0.89365 0.92431 0.92973 0.92598 0.89397 0.94425 0.83774 0.91920 0.87535 0.77001 0.91356 0.89759 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.22 5.69 30.60 0.17 -1.04 16 3 C -0.10 -1.49 4.03 30.60 0.12 -1.36 16 4 C -0.10 -1.42 2.06 -11.54 -0.02 -1.44 16 5 H 0.11 1.23 7.95 -2.39 -0.02 1.21 16 6 C -0.15 -1.40 8.70 71.98 0.63 -0.78 16 7 C 0.53 11.43 7.27 87.66 0.64 12.06 16 8 O -0.59 -17.99 16.19 -3.03 -0.05 -18.04 16 9 N -0.62 -11.28 3.31 -807.92 -2.67 -13.95 16 10 C 0.10 1.30 5.25 86.53 0.45 1.76 16 11 C -0.12 -2.02 6.06 31.50 0.19 -1.83 16 12 C -0.06 -1.19 0.82 -51.26 -0.04 -1.23 16 13 C -0.14 -2.84 7.94 71.98 0.57 -2.27 16 14 C 0.08 1.54 4.40 86.31 0.38 1.92 16 15 N -0.67 -19.20 5.58 -517.92 -2.89 -22.09 16 16 C 0.06 2.07 6.17 85.56 0.53 2.60 16 17 C 0.44 20.23 7.82 87.66 0.69 20.92 16 18 O -0.62 -33.58 15.78 -3.08 -0.05 -33.62 16 19 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 20 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 24 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 C 0.11 2.15 6.15 86.54 0.53 2.68 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.60 6.57 -2.39 -0.02 0.59 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.95 7.95 -2.39 -0.02 0.93 16 36 H 0.09 0.54 6.57 -2.38 -0.02 0.52 16 37 H 0.07 0.59 5.34 -2.39 -0.01 0.58 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.10 0.93 6.56 -2.39 -0.02 0.91 16 40 H 0.09 0.94 8.01 -2.39 -0.02 0.92 16 41 H 0.07 1.27 7.71 -2.39 -0.02 1.25 16 42 H 0.09 1.75 7.49 -2.39 -0.02 1.74 16 43 H 0.06 1.33 6.63 -2.39 -0.02 1.31 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 47 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.34 10.66 6.56 -89.69 -0.59 10.07 16 49 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 51 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 52 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 53 H 0.08 1.39 7.85 -2.39 -0.02 1.37 16 54 H 0.07 1.48 7.60 -2.39 -0.02 1.47 16 Total: -1.00 -71.16 421.35 1.43 -69.74 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -0.43 Total: 39.89 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.83 Total: 12.98 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -6.90 Total: -115.48 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.10 Total: -51.66 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.16 1.43 -69.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270697776.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.208 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds