Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99838 * 2 1 3 5 5 C 1.50703 * 109.47084 * 119.99671 * 2 1 3 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99944 * 180.02562 * 5 2 1 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 2 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 5 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47535 * 325.00618 * 12 11 9 14 14 C 1.53003 * 109.47218 * 85.00262 * 12 11 9 15 15 C 1.52992 * 109.47371 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47602 * 300.00379 * 15 14 12 17 17 C 1.53003 * 109.47067 * 59.99435 * 16 15 14 18 18 C 1.52997 * 109.47181 * 300.00423 * 17 16 15 19 19 H 1.08996 * 109.47340 * 299.99501 * 18 17 16 20 20 C 1.53006 * 109.46947 * 179.97438 * 18 17 16 21 21 N 1.46500 * 109.46934 * 64.99871 * 20 18 17 22 22 C 1.36936 * 119.99785 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00071 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00135 * 180.02562 * 22 21 20 25 25 N 1.31629 * 119.99648 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00311 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46960 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.47167 * 120.00097 * 26 24 22 29 29 H 1.48498 * 109.47604 * 239.99908 * 26 24 22 30 30 H 1.09001 * 109.47375 * 300.00370 * 1 2 3 31 31 H 1.09000 * 109.47140 * 60.00388 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47108 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47368 * 299.99783 * 3 2 1 35 35 H 1.09001 * 109.47372 * 59.99628 * 3 2 1 36 36 H 1.09002 * 109.47067 * 299.99853 * 4 2 1 37 37 H 1.08992 * 109.47461 * 60.00154 * 4 2 1 38 38 H 1.09004 * 109.46930 * 179.97438 * 4 2 1 39 39 H 0.97000 * 119.99708 * 359.97438 * 7 5 2 40 40 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 41 41 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 42 42 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 43 43 H 1.08998 * 109.47302 * 299.99899 * 14 12 11 44 44 H 1.09006 * 109.46570 * 59.99667 * 14 12 11 45 45 H 1.09006 * 109.47100 * 60.00538 * 15 14 12 46 46 H 1.08997 * 109.47506 * 180.02562 * 15 14 12 47 47 H 1.09001 * 109.47821 * 179.97438 * 16 15 14 48 48 H 1.09006 * 109.47022 * 300.00206 * 16 15 14 49 49 H 1.09005 * 109.47087 * 60.00589 * 17 16 15 50 50 H 1.09006 * 109.47034 * 180.02562 * 17 16 15 51 51 H 1.08998 * 109.46803 * 184.99917 * 20 18 17 52 52 H 1.09003 * 109.47056 * 305.00400 * 20 18 17 53 53 H 0.97001 * 120.00047 * 0.02562 * 21 20 18 54 54 H 0.97000 * 119.99487 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8330 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3527 -1.5239 2.6401 10 8 5.9591 -0.9980 1.7309 11 7 6.0266 -2.1075 3.6510 12 6 7.4915 -2.1068 3.6513 13 1 7.8552 -2.1960 2.6276 14 6 8.0009 -0.7994 4.2613 15 6 9.5308 -0.7990 4.2622 16 6 10.0408 -1.9805 5.0897 17 6 9.5314 -3.2879 4.4797 18 6 8.0014 -3.2883 4.4789 19 1 7.6375 -3.1990 5.5024 20 6 7.4921 -4.5956 3.8683 21 7 7.8796 -5.7185 4.7256 22 6 7.5307 -6.9966 4.3792 23 1 6.9702 -7.1767 3.4738 24 6 7.8973 -8.0606 5.1918 25 7 8.5800 -7.8410 6.2956 26 14 7.4207 -9.8039 4.7197 27 1 6.6617 -9.7812 3.4436 28 1 8.6473 -10.6240 4.5510 29 1 6.5749 -10.3927 5.7889 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2076 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 3.9877 -0.4644 0.8055 40 1 3.4828 -2.5519 2.6394 41 1 3.4819 -1.0108 3.5301 42 1 5.5416 -2.5278 4.3783 43 1 7.6374 0.0424 3.6720 44 1 7.6372 -0.7102 5.2850 45 1 9.8948 -0.8883 3.2386 46 1 9.8937 0.1323 4.6972 47 1 11.1308 -1.9805 5.0900 48 1 9.6768 -1.8912 6.1133 49 1 9.8954 -3.3774 3.4561 50 1 9.8944 -4.1297 5.0695 51 1 6.4059 -4.5591 3.7860 52 1 7.9274 -4.7277 2.8777 53 1 8.3827 -5.5567 5.5390 54 1 8.8359 -8.5845 6.8636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275816463.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -120.792033 kcal Electronic energy + Delta-G solvation = -30361.448925 eV Core-core repulsion = 26330.967393 eV Total energy + Delta-G solvation = -4030.481532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.63102 -40.91893 -39.42019 -36.64606 -36.44217 -35.60747 -35.26114 -33.69580 -31.22637 -31.03959 -28.87053 -28.23731 -27.86279 -26.87774 -24.73799 -24.10716 -23.06367 -22.00229 -21.57600 -20.98762 -20.46041 -19.28627 -18.29822 -17.76803 -17.19484 -16.98569 -16.75532 -16.71212 -15.96515 -15.81630 -15.55380 -15.32453 -15.16964 -14.90492 -14.76821 -14.73009 -14.51860 -14.28578 -14.10493 -13.72556 -13.51809 -13.32763 -13.31719 -13.06843 -12.95462 -12.90085 -12.77659 -12.66977 -12.63308 -12.20771 -12.08577 -11.92607 -11.91651 -11.87404 -11.86565 -11.55535 -11.37014 -11.16111 -11.02333 -10.89483 -10.78098 -10.29313 -10.03627 -8.99277 -7.96538 -5.24315 1.44210 1.46080 1.46429 1.56250 1.56736 1.73661 2.40229 2.54299 3.37171 3.48085 3.56843 3.64664 3.78145 3.83422 3.91304 3.93491 4.10091 4.22200 4.24341 4.28738 4.36550 4.38911 4.45729 4.49332 4.52830 4.57122 4.70604 4.71287 4.82035 4.85094 4.88541 4.93691 4.94641 5.00373 5.04588 5.11970 5.13911 5.17923 5.24342 5.25730 5.29841 5.31204 5.31719 5.36215 5.43571 5.46694 5.49209 5.59851 6.26288 6.40218 6.43450 7.06301 7.13023 7.33357 8.08934 8.32995 9.26835 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.002621 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.275187 B =10679.837200 C =13010.466254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.099 3.901 9 C 0.516 3.484 10 O -0.567 6.567 11 N -0.709 5.709 12 C 0.163 3.837 13 H 0.072 0.928 14 C -0.118 4.118 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.086 4.086 19 H 0.079 0.921 20 C 0.159 3.841 21 N -0.740 5.740 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.270 1.270 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.415 0.585 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.413 0.587 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.024 0.976 52 H 0.006 0.994 53 H 0.376 0.624 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 22.983 -10.883 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.307 3.693 6 O -0.459 6.459 7 N -0.366 5.366 8 C -0.028 4.028 9 C 0.303 3.697 10 O -0.447 6.447 11 N -0.360 5.360 12 C 0.058 3.942 13 H 0.090 0.910 14 C -0.157 4.157 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.105 4.105 19 H 0.097 0.903 20 C 0.032 3.968 21 N -0.383 5.383 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.194 1.194 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.254 0.746 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.250 0.750 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.042 0.958 52 H 0.024 0.976 53 H 0.209 0.791 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.848 22.894 -11.074 26.927 hybrid contribution 0.178 -1.622 0.494 1.705 sum -8.670 21.272 -10.580 25.291 Atomic orbital electron populations 1.21672 0.91763 1.02182 1.02751 1.20867 0.98095 0.97285 0.92288 1.21888 1.01634 0.92326 1.03739 1.21903 1.01614 1.00210 0.96086 1.21251 0.81337 0.78804 0.87911 1.90687 1.56217 1.50344 1.48648 1.45745 1.07614 1.58263 1.24988 1.21093 0.90130 1.00545 0.91053 1.20582 0.89958 0.77577 0.81629 1.90665 1.70485 1.46666 1.36878 1.45972 1.07519 1.57338 1.25130 1.20878 0.78658 0.94841 0.99805 0.90962 1.21830 0.96547 0.95885 1.01389 1.21467 0.94191 0.98671 1.00488 1.21547 1.00815 0.93350 0.99502 1.21437 0.93614 0.98274 1.01018 1.21440 0.96759 0.92668 0.99651 0.90300 1.20788 0.96567 0.86741 0.92661 1.42524 1.66772 1.02100 1.26875 1.19595 1.27688 0.85199 1.04994 0.91218 1.25492 1.01750 1.01625 0.97604 1.69806 1.45137 1.31173 1.15555 0.85141 0.77092 0.80469 0.77467 1.19409 1.22043 1.21916 0.93023 0.89417 0.93376 0.91628 0.89090 0.92557 0.92982 0.89006 0.91713 0.74552 0.88223 0.87076 0.75044 0.91809 0.90767 0.92100 0.89977 0.91088 0.91512 0.92597 0.93213 0.95824 0.97625 0.79098 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.76 71.98 0.56 -1.32 16 2 C -0.08 -1.22 0.87 -52.93 -0.05 -1.27 16 3 C -0.14 -1.49 8.37 71.98 0.60 -0.89 16 4 C -0.14 -1.70 8.37 71.98 0.60 -1.10 16 5 C 0.52 11.31 6.48 87.66 0.57 11.88 16 6 O -0.58 -17.04 15.98 -3.02 -0.05 -17.09 16 7 N -0.71 -14.13 5.31 -466.78 -2.48 -16.61 16 8 C 0.10 1.98 6.15 85.63 0.53 2.51 16 9 C 0.52 11.80 7.86 87.66 0.69 12.49 16 10 O -0.57 -15.80 15.33 -3.03 -0.05 -15.84 16 11 N -0.71 -15.59 4.30 -442.54 -1.90 -17.49 16 12 C 0.16 4.00 1.90 44.99 0.09 4.08 16 13 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 14 C -0.12 -2.40 5.49 30.59 0.17 -2.23 16 15 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 16 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 17 C -0.11 -3.07 5.08 30.59 0.16 -2.91 16 18 C -0.09 -2.51 1.80 -10.79 -0.02 -2.52 16 19 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 20 C 0.16 6.12 5.56 86.38 0.48 6.60 16 21 N -0.74 -36.56 5.33 -343.44 -1.83 -38.39 16 22 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 26 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 30 H 0.05 0.87 8.10 -2.39 -0.02 0.86 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.06 0.68 7.56 -2.38 -0.02 0.66 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.77 7.57 -2.38 -0.02 0.75 16 39 H 0.42 7.65 6.27 -92.71 -0.58 7.06 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.41 7.98 8.39 -92.71 -0.78 7.20 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 45 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 50 H 0.05 1.75 7.18 -2.38 -0.02 1.74 16 51 H 0.02 0.90 7.30 -2.39 -0.02 0.88 16 52 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 53 H 0.38 19.61 6.85 -92.71 -0.64 18.97 16 54 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -71.10 424.55 0.94 -70.16 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -1.11 Total: 40.37 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.04 Total: 4.75 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.93 Total: -130.57 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.09 Total: -32.93 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -71.10 0.94 -70.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275816463.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.627 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds