Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 C 1.53005 * 109.46999 * 240.00383 * 2 1 3 5 5 C 1.50694 * 109.47589 * 120.00642 * 2 1 3 6 6 O 1.21287 * 119.99617 * 359.97438 * 5 2 1 7 7 N 1.34771 * 120.00631 * 179.97438 * 5 2 1 8 8 C 1.46494 * 120.00350 * 179.97438 * 7 5 2 9 9 C 1.50703 * 109.47059 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00188 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99971 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46955 * 34.99585 * 12 11 9 14 14 C 1.53002 * 109.46688 * 274.99603 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47127 * 60.00361 * 15 14 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 14 18 18 C 1.52996 * 109.47258 * 154.99970 * 12 11 9 19 19 H 1.09000 * 109.47380 * 59.99156 * 18 12 11 20 20 C 1.53002 * 109.46969 * 299.99857 * 18 12 11 21 21 N 1.46504 * 109.47165 * 174.99907 * 20 18 12 22 22 C 1.36934 * 119.99641 * 179.97438 * 21 20 18 23 23 H 1.07996 * 120.00643 * 0.02562 * 22 21 20 24 24 C 1.38821 * 119.99613 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99827 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47370 * 60.00035 * 26 24 22 28 28 H 1.48500 * 109.47007 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47190 * 300.00025 * 26 24 22 30 30 H 1.09002 * 109.46692 * 299.99718 * 1 2 3 31 31 H 1.08992 * 109.47578 * 59.99271 * 1 2 3 32 32 H 1.08995 * 109.47404 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47639 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47599 * 300.00376 * 3 2 1 35 35 H 1.09002 * 109.47015 * 60.00480 * 3 2 1 36 36 H 1.09003 * 109.46547 * 300.00307 * 4 2 1 37 37 H 1.09001 * 109.46854 * 59.99668 * 4 2 1 38 38 H 1.08992 * 109.47467 * 180.02562 * 4 2 1 39 39 H 0.97010 * 119.99526 * 359.97438 * 7 5 2 40 40 H 1.09002 * 109.47134 * 60.00281 * 8 7 5 41 41 H 1.08994 * 109.47578 * 299.99995 * 8 7 5 42 42 H 0.96998 * 120.00021 * 359.97438 * 11 9 8 43 43 H 1.09002 * 109.47070 * 60.00104 * 14 12 11 44 44 H 1.08996 * 109.47407 * 299.99704 * 14 12 11 45 45 H 1.09001 * 109.47502 * 300.00518 * 15 14 12 46 46 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 47 47 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 48 48 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 49 49 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 50 50 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 51 51 H 1.09000 * 109.47173 * 295.00133 * 20 18 12 52 52 H 1.09002 * 109.47125 * 55.00194 * 20 18 12 53 53 H 0.96994 * 120.00002 * 0.02562 * 21 20 18 54 54 H 0.96994 * 120.00001 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 8 1.2443 -1.1711 2.0289 7 7 3.3575 -0.8341 1.4433 8 6 3.8458 -1.5243 2.6396 9 6 5.3528 -1.5255 2.6389 10 8 5.9592 -1.0010 1.7289 11 7 6.0268 -2.1095 3.6495 12 6 7.4918 -2.1101 3.6490 13 1 7.8554 -1.1789 3.2146 14 6 8.0010 -3.2920 2.8215 15 6 9.5309 -3.2924 2.8205 16 6 10.0419 -3.4181 4.2572 17 6 9.5327 -2.2361 5.0847 18 6 8.0022 -2.2361 5.0858 19 1 7.6385 -3.1673 5.5203 20 6 7.4930 -1.0542 5.9134 21 7 7.8809 -1.2359 7.3144 22 6 7.5330 -0.2969 8.2484 23 1 6.9723 0.5773 7.9524 24 6 7.9011 -0.4688 9.5759 25 7 8.5848 -1.5340 9.9366 26 14 7.4258 0.8117 10.8501 27 1 5.9468 0.9344 10.9009 28 1 7.9347 0.3971 12.1822 29 1 8.0188 2.1220 10.4802 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6765 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7216 -1.2492 39 1 3.9878 -0.4660 0.8044 40 1 3.4821 -2.5519 2.6402 41 1 3.4830 -1.0100 3.5295 42 1 5.5418 -2.5286 4.3775 43 1 7.6373 -3.2023 1.7979 44 1 7.6374 -4.2232 3.2559 45 1 9.8943 -2.3611 2.3859 46 1 9.8937 -4.1341 2.2306 47 1 9.6786 -4.3493 4.6918 48 1 11.1319 -3.4188 4.2564 49 1 9.8971 -2.3254 6.1081 50 1 9.8960 -1.3049 4.6501 51 1 7.9279 -0.1300 5.5329 52 1 6.4067 -1.0013 5.8412 53 1 8.3848 -2.0209 7.5803 54 1 8.8422 -1.6539 10.8640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275816464.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = -120.591233 kcal Electronic energy + Delta-G solvation = -30360.622455 eV Core-core repulsion = 26330.149630 eV Total energy + Delta-G solvation = -4030.472825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.63072 -40.91799 -39.41825 -36.64602 -36.43834 -35.60784 -35.26052 -33.69517 -31.22441 -31.04032 -28.87161 -28.23766 -27.86340 -26.87443 -24.73393 -24.10727 -23.06367 -22.00119 -21.57615 -20.98903 -20.46186 -19.28253 -18.29790 -17.76819 -17.19433 -16.98596 -16.75529 -16.71056 -15.96590 -15.81163 -15.55653 -15.32324 -15.16893 -14.90301 -14.76690 -14.72826 -14.51903 -14.28606 -14.10655 -13.72605 -13.51795 -13.32362 -13.31258 -13.06826 -12.93361 -12.90045 -12.73490 -12.68616 -12.63390 -12.23012 -12.13252 -11.93370 -11.91682 -11.87377 -11.86002 -11.55403 -11.37123 -11.16119 -11.01167 -10.88686 -10.78061 -10.29397 -10.03709 -8.99207 -7.95970 -5.23877 1.44131 1.46237 1.48303 1.54523 1.56663 1.73599 2.40158 2.54717 3.37337 3.48031 3.56828 3.64634 3.78191 3.83401 3.91273 3.93475 4.10134 4.22153 4.24341 4.28732 4.36518 4.39006 4.45689 4.49361 4.52830 4.57073 4.70554 4.71298 4.82048 4.85108 4.88501 4.93684 4.94647 5.00338 5.04576 5.11943 5.13915 5.17912 5.24367 5.25699 5.29843 5.31191 5.31706 5.36190 5.43536 5.46498 5.48974 5.59867 6.26433 6.40142 6.43370 7.06234 7.12957 7.33599 8.09312 8.33470 9.26986 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.002620 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.340158 B =10682.629560 C =13012.390227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.138 4.138 5 C 0.519 3.481 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.099 3.901 9 C 0.516 3.484 10 O -0.567 6.567 11 N -0.709 5.709 12 C 0.163 3.837 13 H 0.072 0.928 14 C -0.118 4.118 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.086 4.086 19 H 0.079 0.921 20 C 0.159 3.841 21 N -0.739 5.739 22 C -0.246 4.246 23 H 0.070 0.930 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.294 1.294 29 H -0.281 1.281 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.413 0.587 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.049 0.951 50 H 0.055 0.945 51 H 0.005 0.995 52 H 0.024 0.976 53 H 0.376 0.624 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 -2.088 -25.258 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.198 4.198 4 C -0.196 4.196 5 C 0.307 3.693 6 O -0.459 6.459 7 N -0.366 5.366 8 C -0.028 4.028 9 C 0.303 3.697 10 O -0.447 6.447 11 N -0.360 5.360 12 C 0.058 3.942 13 H 0.090 0.910 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.105 4.105 19 H 0.097 0.903 20 C 0.033 3.967 21 N -0.383 5.383 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.207 1.207 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.255 0.745 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.250 0.750 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.023 0.977 52 H 0.042 0.958 53 H 0.209 0.791 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.824 -1.889 -25.263 26.826 hybrid contribution 0.167 0.406 1.628 1.686 sum -8.657 -1.483 -23.635 25.214 Atomic orbital electron populations 1.21670 0.91760 1.02311 1.02624 1.20866 0.98096 0.97043 0.92531 1.21901 1.01615 0.92695 1.03603 1.21889 1.01634 1.00299 0.95766 1.21250 0.81337 0.78785 0.87933 1.90690 1.56220 1.50422 1.48575 1.45744 1.07616 1.58392 1.24853 1.21091 0.90127 1.00891 0.90709 1.20583 0.89958 0.77342 0.81865 1.90666 1.70482 1.46654 1.36900 1.45975 1.07521 1.57573 1.24889 1.20879 0.78652 0.99800 0.94849 0.90970 1.21829 0.96547 0.97667 0.99603 1.21469 0.94187 1.02652 0.96511 1.21544 1.00815 0.97682 0.95169 1.21441 0.93606 0.99189 1.00098 1.21448 0.96747 0.98695 0.93622 0.90295 1.20785 0.96556 0.95565 0.83841 1.42505 1.66772 1.25622 1.03356 1.19529 1.27946 1.01141 0.89192 0.91239 1.25491 1.01675 1.00036 0.99168 1.69783 1.44914 1.29946 1.16981 0.85281 0.77910 0.78691 0.78297 1.20476 1.21994 1.20692 0.93375 0.89420 0.93021 0.91714 0.89002 0.92983 0.92557 0.89086 0.91628 0.74549 0.87086 0.88214 0.75046 0.91814 0.90756 0.92108 0.89972 0.91511 0.91087 0.93216 0.92607 0.97656 0.95840 0.79100 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.76 71.98 0.56 -1.32 16 2 C -0.08 -1.22 0.87 -52.93 -0.05 -1.27 16 3 C -0.14 -1.71 8.37 71.98 0.60 -1.10 16 4 C -0.14 -1.49 8.37 71.98 0.60 -0.89 16 5 C 0.52 11.32 6.48 87.66 0.57 11.89 16 6 O -0.58 -17.06 15.98 -3.05 -0.05 -17.11 16 7 N -0.71 -14.15 5.31 -466.81 -2.48 -16.63 16 8 C 0.10 1.99 6.15 85.64 0.53 2.52 16 9 C 0.52 11.82 7.86 87.66 0.69 12.51 16 10 O -0.57 -15.82 15.33 -3.04 -0.05 -15.87 16 11 N -0.71 -15.62 4.31 -442.52 -1.91 -17.53 16 12 C 0.16 4.00 1.90 44.99 0.09 4.09 16 13 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 14 C -0.12 -2.40 5.49 30.59 0.17 -2.23 16 15 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 16 C -0.11 -2.53 5.92 30.60 0.18 -2.34 16 17 C -0.11 -3.07 5.08 30.61 0.16 -2.92 16 18 C -0.09 -2.51 1.80 -10.78 -0.02 -2.53 16 19 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 20 C 0.16 6.14 5.56 86.38 0.48 6.62 16 21 N -0.74 -36.61 5.33 -343.43 -1.83 -38.45 16 22 C -0.25 -13.70 9.99 84.04 0.84 -12.86 16 23 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 25 N -0.97 -58.35 13.06 21.65 0.28 -58.06 16 26 Si 0.97 46.15 29.55 68.60 2.03 48.17 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 30 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.06 0.77 7.57 -2.39 -0.02 0.75 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.06 0.68 7.56 -2.39 -0.02 0.66 16 39 H 0.42 7.66 6.27 -92.70 -0.58 7.08 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.41 8.00 8.39 -92.71 -0.78 7.23 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 1.76 7.19 -2.39 -0.02 1.74 16 50 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 52 H 0.02 0.89 7.30 -2.39 -0.02 0.88 16 53 H 0.38 19.63 6.85 -92.71 -0.64 19.00 16 54 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -71.05 424.56 0.93 -70.11 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.11 Total: 40.71 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.04 Total: 4.65 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.93 Total: -130.67 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.10 Total: -32.97 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -71.05 0.93 -70.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275816464.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.477 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds