Wall clock time and date at job start Sat Apr 11 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.47260 * 184.99676 * 6 4 2 8 8 N 1.46500 * 109.46943 * 179.97438 * 7 6 4 9 9 C 1.46493 * 120.00046 * 269.99971 * 8 7 6 10 10 C 1.34780 * 119.99850 * 90.00259 * 8 7 6 11 11 O 1.21282 * 119.99827 * 359.97438 * 10 8 7 12 12 C 1.50701 * 119.99989 * 179.97438 * 10 8 7 13 13 H 1.08995 * 109.29399 * 40.42174 * 12 10 8 14 14 C 1.52916 * 109.30070 * 281.03680 * 12 10 8 15 15 C 1.53343 * 108.67266 * 188.93525 * 14 12 10 16 16 C 1.53067 * 108.42529 * 67.53231 * 15 14 12 17 17 C 1.50168 * 109.89047 * 311.09756 * 16 15 14 18 18 O 1.21280 * 118.24621 * 197.60464 * 17 16 15 19 19 N 1.33350 * 123.50972 * 17.58532 * 17 16 15 20 20 C 1.46500 * 117.94619 * 177.79819 * 19 17 16 21 21 N 1.46507 * 109.46688 * 299.99730 * 4 2 1 22 22 C 1.36934 * 119.99910 * 85.00020 * 21 4 2 23 23 H 1.08005 * 119.99985 * 359.97438 * 22 21 4 24 24 C 1.38811 * 120.00174 * 179.97438 * 22 21 4 25 25 N 1.31622 * 119.99790 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00587 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47103 * 89.99594 * 26 24 22 28 28 H 1.48497 * 109.47148 * 210.00402 * 26 24 22 29 29 H 1.48506 * 109.46740 * 329.99973 * 26 24 22 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47096 * 304.99906 * 6 4 2 38 38 H 1.09000 * 109.46818 * 64.99802 * 6 4 2 39 39 H 1.08996 * 109.46842 * 300.00328 * 7 6 4 40 40 H 1.09001 * 109.46578 * 60.00310 * 7 6 4 41 41 H 1.09002 * 109.47267 * 90.00512 * 9 8 7 42 42 H 1.09002 * 109.47318 * 210.00106 * 9 8 7 43 43 H 1.08997 * 109.47321 * 330.00610 * 9 8 7 44 44 H 1.09002 * 109.60778 * 308.69329 * 14 12 10 45 45 H 1.09006 * 109.60537 * 69.17840 * 14 12 10 46 46 H 1.09000 * 109.67217 * 307.79582 * 15 14 12 47 47 H 1.09003 * 109.67150 * 187.26466 * 15 14 12 48 48 H 1.09003 * 109.40063 * 190.96732 * 16 15 14 49 49 H 1.09004 * 109.40323 * 71.23011 * 16 15 14 50 50 H 1.09004 * 109.47337 * 269.97149 * 20 19 17 51 51 H 1.08994 * 109.47375 * 29.97642 * 20 19 17 52 52 H 1.08999 * 109.47298 * 149.98225 * 20 19 17 53 53 H 0.96993 * 119.99727 * 264.99832 * 21 4 2 54 54 H 0.96998 * 120.00370 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2074 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 6 4.0799 -1.3303 -2.5570 8 7 5.5449 -1.3292 -2.5576 9 6 6.2764 -0.1790 -3.0943 10 6 6.2198 -2.3864 -2.0643 11 8 5.6142 -3.3385 -1.6195 12 6 7.7268 -2.3856 -2.0653 13 1 8.0866 -1.3935 -1.7925 14 6 8.2314 -2.7342 -3.4661 15 6 9.7483 -2.9496 -3.4019 16 6 10.0233 -4.2135 -2.5835 17 6 9.2483 -4.1684 -1.2980 18 8 9.5852 -4.9087 -0.3984 19 7 8.2098 -3.3576 -1.0925 20 6 7.5108 -3.4492 0.1917 21 7 1.5517 -2.1025 -1.2493 22 6 0.3102 -2.3897 -1.7504 23 1 -0.3092 -1.5980 -2.1453 24 6 -0.1524 -3.6985 -1.7509 25 7 0.6023 -4.6633 -1.2691 26 14 -1.8457 -4.0906 -2.4351 27 1 -1.7362 -4.3912 -3.8853 28 1 -2.4054 -5.2692 -1.7260 29 1 -2.7417 -2.9228 -2.2380 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 3.9330 0.3033 -1.1603 38 1 3.9337 -1.3099 -0.4078 39 1 3.7169 -2.3541 -2.6463 40 1 3.7162 -0.7410 -3.3988 41 1 6.4579 0.5409 -2.2962 42 1 7.2289 -0.5137 -3.5052 43 1 5.6866 0.2917 -3.8809 44 1 7.7468 -3.6469 -3.8128 45 1 8.0069 -1.9156 -4.1500 46 1 10.2208 -2.0921 -2.9229 47 1 10.1445 -3.0718 -4.4100 48 1 11.0887 -4.2768 -2.3620 49 1 9.7216 -5.0896 -3.1576 50 1 6.7058 -4.1802 0.1160 51 1 8.2122 -3.7600 0.9659 52 1 7.0939 -2.4754 0.4488 53 1 2.1078 -2.8134 -0.8943 54 1 0.2793 -5.5780 -1.2698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276148198.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:26 Heat of formation + Delta-G solvation = -84.244516 kcal Electronic energy + Delta-G solvation = -31674.394207 eV Core-core repulsion = 27645.497494 eV Total energy + Delta-G solvation = -4028.896713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.12931 -40.52653 -38.91850 -37.37591 -36.76438 -34.97916 -34.89990 -33.11096 -31.78672 -30.67577 -28.25812 -28.05252 -27.46821 -27.04707 -25.76750 -24.57273 -23.28607 -22.68082 -20.76918 -20.46430 -19.65194 -19.11608 -18.34991 -17.84988 -17.59568 -16.86780 -16.74706 -16.46288 -16.17018 -15.72627 -15.40546 -15.23797 -15.21599 -15.07026 -14.77441 -14.56172 -14.25046 -14.16921 -13.95801 -13.58459 -13.52121 -13.34020 -13.07946 -13.01389 -12.96920 -12.87249 -12.78408 -12.70616 -12.56514 -12.45257 -12.19840 -12.01653 -11.92688 -11.83940 -11.72356 -11.63565 -11.39221 -11.22658 -11.12929 -10.81419 -10.66066 -9.81260 -9.58599 -8.89033 -7.85551 -5.12271 1.42529 1.45285 1.46611 1.51284 1.54695 1.84926 2.13897 2.59508 3.33934 3.46475 3.49229 3.61846 3.81343 3.92999 3.96408 4.02189 4.13214 4.22702 4.25031 4.28241 4.35016 4.45811 4.50997 4.53514 4.54552 4.69773 4.71437 4.75827 4.77990 4.80774 4.85182 4.87690 4.90279 4.96304 5.02449 5.05260 5.07916 5.17146 5.21174 5.23045 5.29206 5.31297 5.39014 5.45074 5.58109 5.61009 5.70097 5.79629 6.28818 6.34407 6.45199 7.01753 7.19695 7.40041 8.19172 8.40929 9.38010 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.003077 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.576873 B = 9098.743604 C =10087.226339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C -0.134 4.134 4 C 0.181 3.819 5 H 0.051 0.949 6 C -0.119 4.119 7 C 0.127 3.873 8 N -0.606 5.606 9 C 0.058 3.942 10 C 0.487 3.513 11 O -0.573 6.573 12 C 0.131 3.869 13 H 0.136 0.864 14 C -0.130 4.130 15 C -0.108 4.108 16 C -0.132 4.132 17 C 0.506 3.494 18 O -0.604 6.604 19 N -0.589 5.589 20 C 0.088 3.912 21 N -0.732 5.732 22 C -0.209 4.209 23 H 0.080 0.920 24 C -0.084 4.084 25 N -0.974 5.974 26 Si 0.960 3.040 27 H -0.290 1.290 28 H -0.305 1.305 29 H -0.266 1.266 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.129 0.871 46 H 0.096 0.904 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.103 0.897 50 H 0.036 0.964 51 H 0.070 0.930 52 H 0.074 0.926 53 H 0.366 0.634 54 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.871 17.254 -7.936 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.192 4.192 4 C 0.072 3.928 5 H 0.069 0.931 6 C -0.158 4.158 7 C 0.004 3.996 8 N -0.338 5.338 9 C -0.083 4.083 10 C 0.274 3.726 11 O -0.451 6.451 12 C 0.024 3.976 13 H 0.153 0.847 14 C -0.168 4.168 15 C -0.145 4.145 16 C -0.171 4.171 17 C 0.297 3.703 18 O -0.487 6.487 19 N -0.321 5.321 20 C -0.055 4.055 21 N -0.371 5.371 22 C -0.341 4.341 23 H 0.098 0.902 24 C -0.275 4.275 25 N -0.626 5.626 26 Si 0.791 3.209 27 H -0.218 1.218 28 H -0.232 1.232 29 H -0.191 1.191 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.114 0.886 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.121 0.879 50 H 0.054 0.946 51 H 0.089 0.911 52 H 0.093 0.907 53 H 0.197 0.803 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.553 16.455 -7.378 27.343 hybrid contribution -1.591 -1.592 0.473 2.300 sum 18.962 14.863 -6.905 25.062 Atomic orbital electron populations 1.21750 0.96189 1.01333 1.00109 1.21673 0.95846 0.96794 0.98745 1.21809 1.01203 0.94246 1.01942 1.20470 0.91775 0.84896 0.95665 0.93076 1.22057 0.95407 1.01448 0.96879 1.21317 0.78666 1.01325 0.98319 1.47991 1.06571 1.18606 1.60662 1.22384 0.98189 0.87252 1.00444 1.21465 0.90969 0.82332 0.77797 1.90840 1.71042 1.36262 1.46962 1.21310 0.89201 0.94836 0.92235 0.84687 1.22069 0.97903 1.04485 0.92311 1.21690 0.93553 0.96680 1.02562 1.21773 1.01409 1.02382 0.91561 1.21146 0.80003 0.78101 0.91053 1.90687 1.69457 1.42460 1.46061 1.47094 1.30351 1.38167 1.16466 1.21537 0.96406 1.02021 0.85550 1.42715 1.17016 1.04040 1.73294 1.19537 0.93287 0.92044 1.29244 0.90173 1.25467 1.01665 0.96271 1.04106 1.69876 1.38613 0.99598 1.54542 0.85316 0.80974 0.77213 0.77446 1.21790 1.23233 1.19060 0.93894 0.93360 0.93311 0.94484 0.91955 0.92699 0.91548 0.88219 0.95001 0.94023 0.88700 0.90536 0.88167 0.88983 0.92416 0.85258 0.88584 0.86697 0.86418 0.87886 0.94560 0.91096 0.90717 0.80266 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.26 71.98 0.59 -4.37 16 2 C -0.11 -3.70 2.69 -10.79 -0.03 -3.73 16 3 C -0.13 -3.19 8.85 71.98 0.64 -2.55 16 4 C 0.18 6.69 2.02 44.99 0.09 6.78 16 5 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 6 C -0.12 -3.65 4.86 30.59 0.15 -3.50 16 7 C 0.13 3.83 5.34 86.38 0.46 4.29 16 8 N -0.61 -13.49 2.87 -846.77 -2.43 -15.93 16 9 C 0.06 0.52 9.94 127.77 1.27 1.79 16 10 C 0.49 13.54 6.17 87.66 0.54 14.08 16 11 O -0.57 -23.96 13.91 -3.04 -0.04 -24.00 16 12 C 0.13 2.39 2.27 44.36 0.10 2.49 16 13 H 0.14 1.42 7.22 -2.39 -0.02 1.40 16 14 C -0.13 -1.49 5.06 30.68 0.16 -1.33 16 15 C -0.11 -0.73 6.03 30.73 0.19 -0.55 16 16 C -0.13 -1.95 6.03 29.70 0.18 -1.77 16 17 C 0.51 13.48 7.47 87.71 0.66 14.13 16 18 O -0.60 -21.83 16.18 -3.03 -0.05 -21.88 16 19 N -0.59 -15.34 2.96 -831.56 -2.46 -17.80 16 20 C 0.09 2.73 8.69 127.77 1.11 3.84 16 21 N -0.73 -36.70 4.45 -322.92 -1.44 -38.14 16 22 C -0.21 -11.39 7.57 84.03 0.64 -10.76 16 23 H 0.08 4.14 7.39 -2.91 -0.02 4.12 16 24 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 25 N -0.97 -63.16 13.06 21.65 0.28 -62.88 16 26 Si 0.96 47.53 29.55 68.60 2.03 49.56 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.04 1.93 6.01 -2.39 -0.01 1.91 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.35 6.32 -2.39 -0.02 1.33 16 37 H 0.10 2.26 6.17 -2.39 -0.01 2.24 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.78 7.03 -2.39 -0.02 1.76 16 40 H 0.09 2.39 7.89 -2.39 -0.02 2.37 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.10 0.31 4.61 -2.39 -0.01 0.30 16 43 H 0.09 0.61 7.89 -2.39 -0.02 0.59 16 44 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 45 H 0.13 0.57 6.14 -2.38 -0.01 0.55 16 46 H 0.10 0.33 8.13 -2.39 -0.02 0.31 16 47 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.04 1.41 6.95 -2.39 -0.02 1.39 16 51 H 0.07 2.21 7.13 -2.39 -0.02 2.19 16 52 H 0.07 2.04 7.75 -2.39 -0.02 2.02 16 53 H 0.37 21.21 7.80 -92.71 -0.72 20.49 16 54 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -87.50 411.43 3.25 -84.25 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.16 Total: 32.44 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.20 Total: 14.38 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -6.05 Total: -134.75 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.09 Total: -45.88 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -87.50 3.25 -84.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276148198.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.006 kcal (2) G-P(sol) polarization free energy of solvation -87.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds