Wall clock time and date at job start Sat Apr 11 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00135 * 2 1 4 4 N 1.34783 * 119.99906 * 180.02562 * 2 1 3 5 5 C 1.47417 * 125.64709 * 0.03904 * 4 2 1 6 6 C 1.54906 * 104.83212 * 204.09470 * 5 4 2 7 7 C 1.55542 * 101.60118 * 322.95688 * 6 5 4 8 8 C 1.47016 * 125.64777 * 180.02562 * 4 2 1 9 9 H 1.09001 * 109.88626 * 298.54553 * 8 4 2 10 10 C 1.50706 * 109.88579 * 59.55618 * 8 4 2 11 11 O 1.21280 * 119.99422 * 18.28354 * 10 8 4 12 12 N 1.34774 * 120.00093 * 198.28517 * 10 8 4 13 13 C 1.46501 * 120.00160 * 359.97438 * 12 10 8 14 14 C 1.46496 * 119.99766 * 179.97438 * 12 10 8 15 15 C 1.52999 * 109.47105 * 269.99551 * 14 12 10 16 16 C 1.53001 * 109.46946 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47274 * 55.00346 * 16 15 14 18 18 N 1.46504 * 109.47114 * 294.99855 * 16 15 14 19 19 C 1.36943 * 119.99781 * 155.00305 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 C 1.53006 * 109.47020 * 175.00315 * 16 15 14 28 28 C 1.53001 * 109.47020 * 179.97438 * 27 16 15 29 29 C 1.53000 * 109.46849 * 299.99799 * 27 16 15 30 30 H 1.09004 * 109.47188 * 240.00067 * 1 2 3 31 31 H 1.09001 * 109.46864 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47229 * 119.99775 * 1 2 3 33 33 H 1.09000 * 110.37058 * 322.93463 * 5 4 2 34 34 H 1.08997 * 110.36792 * 85.25734 * 5 4 2 35 35 H 1.09000 * 111.00797 * 81.06649 * 6 5 4 36 36 H 1.09006 * 111.00711 * 204.87486 * 6 5 4 37 37 H 1.09000 * 110.77968 * 277.24590 * 7 6 5 38 38 H 1.08992 * 110.83813 * 153.84574 * 7 6 5 39 39 H 1.09001 * 109.47232 * 270.00429 * 13 12 10 40 40 H 1.09003 * 109.46858 * 30.00595 * 13 12 10 41 41 H 1.09000 * 109.46743 * 150.00079 * 13 12 10 42 42 H 1.09006 * 109.47072 * 149.99884 * 14 12 10 43 43 H 1.09003 * 109.47688 * 29.99905 * 14 12 10 44 44 H 1.08997 * 109.47025 * 60.00806 * 15 14 12 45 45 H 1.08998 * 109.47192 * 299.99944 * 15 14 12 46 46 H 0.97000 * 120.00410 * 335.00630 * 18 16 15 47 47 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.47072 * 59.99907 * 27 16 15 49 49 H 1.08993 * 109.47103 * 59.99783 * 28 27 16 50 50 H 1.08998 * 109.46973 * 180.02562 * 28 27 16 51 51 H 1.08998 * 109.47189 * 299.99444 * 28 27 16 52 52 H 1.09002 * 109.46769 * 60.00430 * 29 27 16 53 53 H 1.08998 * 109.46814 * 179.97438 * 29 27 16 54 54 H 1.08993 * 109.47255 * 300.00205 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5730 -2.5103 -0.0019 6 6 2.6545 -3.4357 0.6093 7 6 3.9583 -2.8227 0.0232 8 6 3.6439 -1.3120 -0.0001 9 1 4.0615 -0.8604 -0.9000 10 6 4.2243 -0.6487 1.2224 11 8 3.5132 -0.4014 2.1733 12 7 5.5333 -0.3302 1.2589 13 6 6.3923 -0.6293 0.1105 14 6 6.0973 0.3151 2.4471 15 6 5.9944 1.8345 2.2995 16 6 6.5839 2.5084 3.5402 17 1 7.6032 2.1550 3.6959 18 7 5.7677 2.1765 4.7106 19 6 6.3220 2.2059 5.9625 20 1 7.3609 2.4733 6.0869 21 6 5.5501 1.8858 7.0709 22 7 4.2841 1.5593 6.9193 23 14 6.3082 1.9183 8.7778 24 1 6.1459 3.2723 9.3657 25 1 5.6281 0.9193 9.6406 26 1 7.7532 1.5893 8.6841 27 6 6.5951 4.0253 3.3398 28 6 7.1841 4.6992 4.5807 29 6 7.4476 4.3719 2.1175 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 0.6734 -2.5202 0.6134 34 1 1.3402 -2.8202 -1.0206 35 1 2.6495 -3.3767 1.6977 36 1 2.5222 -4.4649 0.2754 37 1 4.1412 -3.1944 -0.9850 38 1 4.8095 -3.0293 0.6718 39 1 6.8186 -1.6259 0.2254 40 1 5.8018 -0.5899 -0.8049 41 1 7.1956 0.1055 0.0565 42 1 7.1442 0.0304 2.5528 43 1 5.5434 -0.0025 3.3306 44 1 4.9475 2.1192 2.1939 45 1 6.5483 2.1521 1.4162 46 1 4.8347 1.9359 4.5988 47 1 3.7447 1.3360 7.6938 48 1 5.5759 4.3787 3.1841 49 1 8.2032 4.3458 4.7369 50 1 7.1917 5.7798 4.4382 51 1 6.5764 4.4523 5.4512 52 1 7.0275 3.8918 1.2337 53 1 7.4552 5.4524 1.9745 54 1 8.4667 4.0184 2.2732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276153418.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:40 Heat of formation + Delta-G solvation = -85.510941 kcal Electronic energy + Delta-G solvation = -31877.072026 eV Core-core repulsion = 27848.120397 eV Total energy + Delta-G solvation = -4028.951629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.82880 -40.12747 -38.94256 -38.09695 -36.63185 -34.94163 -33.39283 -32.82660 -31.68549 -30.80448 -29.68126 -28.09438 -27.49719 -26.79374 -25.19338 -24.40269 -23.03670 -22.29514 -21.04724 -20.73611 -19.68131 -19.13504 -18.43872 -18.09880 -17.36196 -16.89745 -16.37909 -16.31315 -16.25091 -15.75309 -15.48471 -15.22562 -15.07274 -15.00973 -14.55885 -14.31757 -14.22917 -13.89533 -13.77824 -13.67247 -13.54989 -13.34268 -13.26283 -13.06899 -13.00657 -12.95999 -12.84745 -12.76912 -12.52693 -12.30648 -12.19800 -12.15272 -12.01286 -11.99881 -11.79597 -11.71276 -11.43365 -11.21877 -11.01814 -10.88336 -10.79716 -9.69141 -9.62207 -8.93073 -7.86794 -5.15175 1.43581 1.46416 1.46645 1.54215 1.67917 1.96224 2.19561 2.57992 3.39583 3.44153 3.52940 3.61727 3.85499 3.86850 3.92687 3.98301 4.15511 4.18760 4.22245 4.34030 4.40309 4.42470 4.46112 4.49791 4.55786 4.59964 4.68507 4.69191 4.72862 4.76071 4.82365 4.85638 4.91255 4.91995 4.96660 5.00744 5.04795 5.11221 5.13607 5.22044 5.23843 5.30905 5.32943 5.39210 5.54808 5.60293 5.64868 5.75257 6.32065 6.40450 6.50390 7.11371 7.27668 7.36709 8.13502 8.38568 9.37246 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003398 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.938159 B = 8239.361055 C = 9022.266017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.513 3.487 3 O -0.598 6.598 4 N -0.609 5.609 5 C 0.096 3.904 6 C -0.133 4.133 7 C -0.109 4.109 8 C 0.115 3.885 9 H 0.109 0.891 10 C 0.491 3.509 11 O -0.580 6.580 12 N -0.616 5.616 13 C 0.068 3.932 14 C 0.130 3.870 15 C -0.116 4.116 16 C 0.183 3.817 17 H 0.055 0.945 18 N -0.732 5.732 19 C -0.213 4.213 20 H 0.083 0.917 21 C -0.086 4.086 22 N -0.977 5.977 23 Si 0.967 3.033 24 H -0.291 1.291 25 H -0.302 1.302 26 H -0.264 1.264 27 C -0.111 4.111 28 C -0.134 4.134 29 C -0.134 4.134 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.045 0.955 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.017 0.983 45 H 0.092 0.908 46 H 0.364 0.636 47 H 0.245 0.755 48 H 0.030 0.970 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.043 0.957 52 H 0.058 0.942 53 H 0.057 0.943 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -12.716 -24.395 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.304 3.696 3 O -0.479 6.479 4 N -0.343 5.343 5 C -0.025 4.025 6 C -0.171 4.171 7 C -0.147 4.147 8 C 0.008 3.992 9 H 0.127 0.873 10 C 0.279 3.721 11 O -0.458 6.458 12 N -0.349 5.349 13 C -0.073 4.073 14 C 0.007 3.993 15 C -0.155 4.155 16 C 0.074 3.926 17 H 0.073 0.927 18 N -0.371 5.371 19 C -0.345 4.345 20 H 0.100 0.900 21 C -0.277 4.277 22 N -0.629 5.629 23 Si 0.796 3.204 24 H -0.218 1.218 25 H -0.229 1.229 26 H -0.188 1.188 27 C -0.132 4.132 28 C -0.191 4.191 29 C -0.191 4.191 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.036 0.964 45 H 0.111 0.889 46 H 0.195 0.805 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.077 0.923 53 H 0.076 0.924 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.815 -11.976 -23.780 26.638 hybrid contribution -0.485 0.542 1.811 1.951 sum 0.330 -11.434 -21.970 24.770 Atomic orbital electron populations 1.21885 0.87872 1.05735 1.06199 1.21389 0.92267 0.81734 0.74188 1.90711 1.72169 1.32986 1.52037 1.48538 1.05621 1.07423 1.72676 1.22727 0.97228 0.79230 1.03333 1.22917 0.93395 1.01000 0.99753 1.22778 0.99036 0.87733 1.05171 1.21810 0.82698 0.99741 0.94989 0.87333 1.21711 0.82178 0.78407 0.89811 1.90752 1.60252 1.55232 1.39607 1.48041 1.08878 1.59764 1.18251 1.22195 0.95130 1.03039 0.86969 1.21231 0.98743 0.92183 0.87161 1.22019 0.99312 0.95327 0.98884 1.20448 0.94164 0.92300 0.85676 0.92691 1.42727 1.10504 1.81605 1.02255 1.19586 0.95077 1.35178 0.84640 0.89956 1.25554 0.96379 1.04152 1.01604 1.69908 1.07906 1.55755 1.29295 0.85221 0.78005 0.76669 0.80466 1.21808 1.22899 1.18816 1.21678 0.98013 0.97506 0.96005 1.21727 1.00281 0.98728 0.98362 1.21799 0.99729 1.01292 0.96318 0.88470 0.89839 0.85566 0.89780 0.86839 0.93618 0.85381 0.84901 0.90045 0.89829 0.89625 0.89564 0.88616 0.94075 0.96378 0.88931 0.80540 0.94665 0.95118 0.92926 0.93150 0.93806 0.92347 0.92402 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.33 71.24 0.66 -2.48 16 2 C 0.51 15.88 7.30 87.66 0.64 16.52 16 3 O -0.60 -25.62 16.71 -3.02 -0.05 -25.67 16 4 N -0.61 -14.96 2.79 -792.20 -2.21 -17.16 16 5 C 0.10 1.30 6.69 86.86 0.58 1.88 16 6 C -0.13 -1.76 7.09 32.12 0.23 -1.53 16 7 C -0.11 -1.45 6.27 31.92 0.20 -1.25 16 8 C 0.12 2.72 2.50 44.60 0.11 2.83 16 9 H 0.11 2.21 6.37 -2.39 -0.02 2.19 16 10 C 0.49 17.53 6.04 87.66 0.53 18.06 16 11 O -0.58 -28.65 15.53 -3.03 -0.05 -28.69 16 12 N -0.62 -18.88 2.87 -846.75 -2.43 -21.32 16 13 C 0.07 1.15 10.06 127.77 1.29 2.44 16 14 C 0.13 4.86 5.29 86.38 0.46 5.31 16 15 C -0.12 -4.53 4.86 30.59 0.15 -4.38 16 16 C 0.18 7.79 2.02 44.99 0.09 7.88 16 17 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 18 N -0.73 -40.18 4.45 -322.92 -1.44 -41.61 16 19 C -0.21 -12.26 7.57 84.03 0.64 -11.63 16 20 H 0.08 4.46 7.40 -2.91 -0.02 4.44 16 21 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 22 N -0.98 -65.62 13.06 21.65 0.28 -65.34 16 23 Si 0.97 48.89 29.55 68.60 2.03 50.92 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 25 H -0.30 -15.55 7.11 99.48 0.71 -14.85 16 26 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 27 C -0.11 -4.31 2.69 -10.79 -0.03 -4.34 16 28 C -0.13 -5.29 8.26 71.98 0.59 -4.69 16 29 C -0.13 -3.85 8.85 71.98 0.64 -3.21 16 30 H 0.10 1.77 7.85 -2.39 -0.02 1.75 16 31 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 32 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.08 7.48 -2.39 -0.02 1.06 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 1.21 7.82 -2.39 -0.02 1.19 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.14 5.97 -2.39 -0.01 1.12 16 41 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 42 H 0.10 2.99 8.07 -2.38 -0.02 2.97 16 43 H 0.04 2.02 7.03 -2.39 -0.02 2.01 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 2.91 6.17 -2.39 -0.01 2.90 16 46 H 0.36 23.10 7.80 -92.71 -0.72 22.38 16 47 H 0.24 16.03 8.31 -92.71 -0.77 15.26 16 48 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.04 2.09 6.01 -2.39 -0.01 2.08 16 52 H 0.06 1.58 6.32 -2.39 -0.02 1.56 16 53 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 54 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -95.70 421.18 3.52 -92.18 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: 0.15 Total: 40.07 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 7.24 Total: 16.62 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -5.80 Total: -145.43 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.10 Total: -54.36 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -95.70 3.52 -92.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276153418.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.667 kcal (2) G-P(sol) polarization free energy of solvation -95.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds