Wall clock time and date at job start Sat Apr 11 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 C 1.53000 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47058 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00580 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99941 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99944 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47381 * 325.00307 * 8 7 5 10 10 C 1.52999 * 109.46944 * 85.00803 * 8 7 5 11 11 C 1.53006 * 109.47249 * 205.00159 * 8 7 5 12 12 C 1.53112 * 109.52104 * 299.87900 * 11 8 7 13 13 C 1.53048 * 109.27319 * 182.50237 * 12 11 8 14 14 N 1.46840 * 109.57592 * 59.08379 * 13 12 11 15 15 C 1.46902 * 111.00039 * 174.19360 * 14 13 12 16 16 C 1.50696 * 109.47062 * 294.20473 * 15 14 13 17 17 O 1.21289 * 120.00163 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99772 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99808 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99726 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00423 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99684 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46905 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47059 * 120.00294 * 23 21 19 26 26 H 1.48499 * 109.46910 * 239.99817 * 23 21 19 27 27 C 1.46850 * 111.19681 * 298.29076 * 14 13 12 28 28 C 1.53029 * 109.52255 * 61.74243 * 27 14 13 29 29 H 1.09007 * 109.47091 * 300.00331 * 1 2 3 30 30 H 1.09000 * 109.46985 * 59.99883 * 1 2 3 31 31 H 1.09004 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46639 * 240.00080 * 2 1 3 33 33 H 1.09000 * 109.46985 * 120.00117 * 2 1 3 34 34 H 1.08993 * 109.47578 * 59.99815 * 3 2 1 35 35 H 1.09000 * 109.47286 * 299.99932 * 3 2 1 36 36 H 1.09005 * 109.47030 * 60.00209 * 4 3 2 37 37 H 1.09000 * 109.46985 * 300.00117 * 4 3 2 38 38 H 0.96998 * 120.00178 * 0.02562 * 7 5 4 39 39 H 1.09002 * 109.46716 * 299.99651 * 10 8 7 40 40 H 1.09000 * 109.47486 * 59.99569 * 10 8 7 41 41 H 1.09001 * 109.47362 * 180.02562 * 10 8 7 42 42 H 1.09004 * 109.51986 * 60.00128 * 11 8 7 43 43 H 1.08996 * 109.50857 * 302.37585 * 12 11 8 44 44 H 1.08995 * 109.51130 * 62.49943 * 12 11 8 45 45 H 1.08999 * 109.40834 * 299.06374 * 13 12 11 46 46 H 1.09001 * 109.45676 * 179.12397 * 13 12 11 47 47 H 1.08997 * 109.47322 * 54.21146 * 15 14 13 48 48 H 1.09004 * 109.46834 * 174.20495 * 15 14 13 49 49 H 0.97000 * 120.00217 * 0.02562 * 18 16 15 50 50 H 0.96995 * 120.00033 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.46089 * 301.72464 * 27 14 13 52 52 H 1.09006 * 109.45416 * 181.75362 * 27 14 13 53 53 H 1.09010 * 109.50481 * 180.88053 * 28 27 14 54 54 H 1.08997 * 109.54108 * 60.78590 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2843 3.7852 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 5.8857 4.4908 -0.0002 9 1 5.2137 5.1133 -0.5910 10 6 5.9360 5.0151 1.4362 11 6 7.2889 4.5351 -0.6087 12 6 8.2346 3.6635 0.2221 13 6 9.6490 3.7614 -0.3542 14 7 10.0943 5.1605 -0.3305 15 6 11.4981 5.2734 -0.7484 16 6 12.3805 4.5935 0.2665 17 8 11.8884 4.0663 1.2418 18 7 13.7164 4.5704 0.0900 19 6 14.5192 3.9514 1.0131 20 1 14.0811 3.4827 1.8819 21 6 15.8966 3.9280 0.8314 22 7 16.4298 4.4987 -0.2255 23 14 16.9905 3.0852 2.0895 24 1 16.1511 2.5250 3.1789 25 1 17.7465 1.9888 1.4326 26 1 17.9434 4.0725 2.6572 27 6 9.2283 6.0074 -1.1607 28 6 7.8018 5.9778 -0.6075 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8892 37 1 3.9329 0.9287 0.8909 38 1 6.0277 2.3723 0.0016 39 1 4.9364 4.9835 1.8697 40 1 6.6080 4.3926 2.0270 41 1 6.2989 6.0429 1.4354 42 1 7.2541 4.1617 -1.6322 43 1 8.2385 4.0125 1.2547 44 1 7.8981 2.6273 0.1890 45 1 9.6473 3.3981 -1.3819 46 1 10.3279 3.1541 0.2445 47 1 11.6275 4.7965 -1.7199 48 1 11.7720 6.3259 -0.8210 49 1 14.1100 4.9917 -0.6901 50 1 17.3913 4.4827 -0.3521 51 1 9.2286 5.6337 -2.1847 52 1 9.6017 7.0314 -1.1478 53 1 7.1559 6.5941 -1.2331 54 1 7.7978 6.3647 0.4115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279119577.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:46 Heat of formation + Delta-G solvation = -121.070460 kcal Electronic energy + Delta-G solvation = -29714.678966 eV Core-core repulsion = 25684.185360 eV Total energy + Delta-G solvation = -4030.493606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.25137 -40.49057 -39.40245 -37.11402 -36.14609 -35.84539 -34.00996 -33.23703 -31.80221 -31.71795 -30.48054 -28.57539 -26.64957 -25.88516 -24.66727 -24.19433 -22.43465 -21.81212 -21.15235 -20.99218 -20.04016 -19.84581 -18.04872 -17.70582 -17.18548 -16.85234 -16.63168 -16.46053 -16.31988 -15.71977 -15.57575 -15.53903 -15.33989 -15.05291 -14.88461 -14.57873 -14.30181 -14.19120 -13.84398 -13.68125 -13.47580 -13.43439 -13.22080 -13.18443 -12.90022 -12.78591 -12.57474 -12.51197 -12.37983 -12.18292 -12.11133 -12.07762 -11.85850 -11.83041 -11.60602 -11.51188 -11.44290 -11.33930 -11.09986 -10.75902 -10.20125 -10.04589 -9.96939 -9.11685 -8.44883 -5.93131 1.37192 1.42411 1.56284 1.70032 2.08424 2.25975 2.29612 2.82437 3.22304 3.42411 3.65206 3.79939 3.81517 3.91672 3.96609 4.07244 4.22894 4.28189 4.34459 4.36656 4.39173 4.44911 4.47582 4.52810 4.54107 4.59955 4.64431 4.66341 4.75765 4.80975 4.84635 4.91605 4.95309 4.98329 5.01625 5.06169 5.10415 5.12266 5.23906 5.27390 5.29035 5.30972 5.39568 5.42965 5.49894 5.55206 5.60944 5.94758 6.15840 6.33912 6.60729 6.63337 7.15567 7.31293 7.59607 8.15502 8.72790 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.001793 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.409882 B =15608.450081 C =16565.564304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.137 4.137 5 C 0.507 3.493 6 O -0.588 6.588 7 N -0.719 5.719 8 C 0.155 3.845 9 H 0.076 0.924 10 C -0.161 4.161 11 C -0.083 4.083 12 C -0.101 4.101 13 C 0.054 3.946 14 N -0.533 5.533 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.056 3.944 28 C -0.106 4.106 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.411 0.589 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.030 0.970 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.041 0.959 52 H 0.083 0.917 53 H 0.088 0.912 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.441 -4.616 -5.235 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.176 4.176 5 C 0.296 3.704 6 O -0.468 6.468 7 N -0.371 5.371 8 C 0.050 3.950 9 H 0.094 0.906 10 C -0.219 4.219 11 C -0.102 4.102 12 C -0.139 4.139 13 C -0.073 4.073 14 N -0.258 5.258 15 C -0.074 4.074 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.072 4.072 28 C -0.144 4.144 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.059 0.941 52 H 0.102 0.898 53 H 0.106 0.894 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.164 -4.129 -4.170 25.839 hybrid contribution 1.504 -0.521 -0.533 1.679 sum -23.660 -4.650 -4.704 24.567 Atomic orbital electron populations 1.21788 0.95877 1.02006 1.01615 1.21529 0.96028 0.95409 1.02902 1.21319 0.93346 0.97399 1.01968 1.21763 0.97506 0.91966 1.06408 1.21357 0.82070 0.92648 0.74373 1.90676 1.56388 1.48142 1.51592 1.46196 1.07106 1.09132 1.74667 1.20802 0.94465 0.83072 0.96638 0.90620 1.22220 1.01082 1.02200 0.96439 1.21380 0.92406 0.96829 0.99575 1.21592 0.92525 0.99857 0.99908 1.22129 0.97495 0.89011 0.98701 1.61480 1.00300 1.09618 1.54445 1.21708 0.88792 1.01837 0.95047 1.20788 0.82807 0.84512 0.88922 1.90457 1.74484 1.51060 1.33756 1.41954 1.05278 1.50595 1.23552 1.19689 0.88863 1.33089 1.04320 0.90308 1.26005 0.97971 0.97960 0.99337 1.69678 1.13253 1.44753 1.28608 0.84890 0.77707 0.78040 0.77814 1.19804 1.19657 1.19765 1.22190 0.93168 0.97635 0.94182 1.21641 0.94488 0.95707 1.02612 0.93178 0.93047 0.91846 0.90948 0.91126 0.93043 0.92808 0.86657 0.86947 0.75159 0.93888 0.92120 0.90770 0.90064 0.91867 0.90316 0.95148 0.92154 0.91852 0.87459 0.77133 0.91403 0.94103 0.89846 0.89362 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.10 -1.44 4.50 30.59 0.14 -1.31 16 4 C -0.14 -1.60 5.70 29.85 0.17 -1.43 16 5 C 0.51 9.68 7.79 87.66 0.68 10.37 16 6 O -0.59 -16.36 15.65 -3.03 -0.05 -16.41 16 7 N -0.72 -11.62 5.00 -442.52 -2.21 -13.84 16 8 C 0.15 2.87 2.41 44.99 0.11 2.98 16 9 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 10 C -0.16 -3.27 8.78 71.98 0.63 -2.64 16 11 C -0.08 -1.50 2.25 -10.72 -0.02 -1.52 16 12 C -0.10 -2.27 4.87 30.65 0.15 -2.12 16 13 C 0.05 1.63 5.10 86.33 0.44 2.07 16 14 N -0.53 -16.42 4.40 -900.92 -3.96 -20.38 16 15 C 0.06 1.95 5.45 85.56 0.47 2.42 16 16 C 0.44 20.75 7.46 87.66 0.65 21.41 16 17 O -0.61 -33.05 13.90 -3.06 -0.04 -33.09 16 18 N -0.58 -29.33 5.29 -306.99 -1.62 -30.95 16 19 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 23 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.06 1.23 5.46 86.32 0.47 1.70 16 28 C -0.11 -2.00 5.09 30.64 0.16 -1.84 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.05 0.91 8.10 -2.39 -0.02 0.90 16 36 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.41 4.85 6.92 -92.71 -0.64 4.21 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.27 6.38 -2.39 -0.02 1.26 16 41 H 0.07 1.43 6.38 -2.39 -0.02 1.42 16 42 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.06 1.67 6.31 -2.39 -0.02 1.65 16 44 H 0.08 1.41 6.61 -2.39 -0.02 1.39 16 45 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 2.35 5.78 -2.39 -0.01 2.34 16 47 H 0.06 1.94 8.12 -2.39 -0.02 1.93 16 48 H 0.11 3.24 7.99 -2.38 -0.02 3.22 16 49 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 50 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 51 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.08 1.71 8.02 -2.38 -0.02 1.69 16 53 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 54 H 0.07 1.48 6.31 -2.39 -0.02 1.47 16 Total: -1.00 -71.55 417.70 0.16 -71.39 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.48 Total: 37.66 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.22 Total: 10.10 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -7.51 Total: -114.42 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.09 Total: -49.50 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.55 0.16 -71.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279119577.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.681 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds