Wall clock time and date at job start Sat Apr 11 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.52997 * 109.47401 * 120.00376 * 2 1 3 5 5 H 1.08998 * 115.55817 * 277.00606 * 4 2 1 6 6 C 1.52999 * 117.50026 * 131.31897 * 4 2 1 7 7 C 1.52996 * 117.49828 * 62.69493 * 4 2 1 8 8 H 1.09006 * 117.49950 * 214.98107 * 7 4 2 9 9 C 1.50699 * 117.50130 * 0.02562 * 7 4 2 10 10 O 1.21290 * 119.99804 * 37.95361 * 9 7 4 11 11 N 1.34776 * 120.00505 * 217.95823 * 9 7 4 12 12 C 1.46502 * 119.99520 * 359.97438 * 11 9 7 13 13 C 1.46498 * 120.00051 * 179.97438 * 11 9 7 14 14 C 1.52997 * 109.47266 * 89.99956 * 13 11 9 15 15 C 1.53002 * 109.47402 * 179.97438 * 14 13 11 16 16 N 1.46897 * 109.47052 * 179.97438 * 15 14 13 17 17 C 1.46903 * 111.00141 * 293.95226 * 16 15 14 18 18 C 1.46905 * 110.99426 * 170.00333 * 16 15 14 19 19 C 1.50708 * 109.46783 * 189.99939 * 18 16 15 20 20 O 1.21290 * 119.99689 * 359.97438 * 19 18 16 21 21 N 1.34771 * 119.99720 * 180.02562 * 19 18 16 22 22 C 1.37105 * 119.99537 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00474 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99743 * 179.97438 * 22 21 19 25 25 N 1.31404 * 120.00125 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99964 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47276 * 90.00123 * 26 24 22 28 28 H 1.48502 * 109.47023 * 209.99781 * 26 24 22 29 29 H 1.48501 * 109.47401 * 330.00194 * 26 24 22 30 30 H 1.08993 * 109.46743 * 174.89723 * 1 2 3 31 31 H 1.09000 * 109.46829 * 294.89525 * 1 2 3 32 32 H 1.09001 * 109.46731 * 54.89499 * 1 2 3 33 33 H 1.09003 * 109.46792 * 240.00596 * 2 1 3 34 34 H 1.09004 * 109.47442 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47481 * 299.99984 * 3 2 1 36 36 H 1.09004 * 109.47346 * 60.00562 * 3 2 1 37 37 H 1.08997 * 117.49862 * 145.02243 * 6 4 2 38 38 H 1.09007 * 117.50003 * 359.97438 * 6 4 2 39 39 H 1.09006 * 109.46590 * 90.00572 * 12 11 9 40 40 H 1.09003 * 109.47149 * 209.99973 * 12 11 9 41 41 H 1.08997 * 109.47623 * 330.00589 * 12 11 9 42 42 H 1.09002 * 109.46852 * 209.99305 * 13 11 9 43 43 H 1.08991 * 109.47165 * 329.99595 * 13 11 9 44 44 H 1.09004 * 109.47315 * 299.99815 * 14 13 11 45 45 H 1.09004 * 109.47130 * 59.99889 * 14 13 11 46 46 H 1.08996 * 109.46967 * 300.00015 * 15 14 13 47 47 H 1.08998 * 109.46419 * 59.99794 * 15 14 13 48 48 H 1.09000 * 109.47074 * 60.00213 * 17 16 15 49 49 H 1.08996 * 109.47295 * 180.02562 * 17 16 15 50 50 H 1.09005 * 109.46878 * 300.00503 * 17 16 15 51 51 H 1.09003 * 109.47268 * 309.99507 * 18 16 15 52 52 H 1.08998 * 109.47338 * 69.99985 * 18 16 15 53 53 H 0.97003 * 120.00271 * 359.97438 * 21 19 18 54 54 H 0.97008 * 120.00249 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 2.0838 -0.1178 2.1558 6 6 3.1204 -1.7877 1.0576 7 6 1.6887 -2.2024 1.4026 8 1 1.5011 -2.5734 2.4103 9 6 0.8671 -2.8394 0.3116 10 8 1.0573 -2.5349 -0.8470 11 7 -0.0790 -3.7473 0.6231 12 6 -0.3084 -4.1153 2.0224 13 6 -0.8780 -4.3660 -0.4376 14 6 -0.1812 -5.6379 -0.9249 15 6 -1.0159 -6.2844 -2.0323 16 7 -0.3466 -7.5053 -2.5006 17 6 0.9257 -7.1873 -3.1625 18 6 -1.2238 -8.2785 -3.3898 19 6 -0.6087 -9.6291 -3.6521 20 8 0.4559 -9.9187 -3.1482 21 7 -1.2411 -10.5145 -4.4474 22 6 -0.6817 -11.7434 -4.6855 23 1 0.2657 -12.0017 -4.2362 24 6 -1.3340 -12.6565 -5.5050 25 7 -0.7977 -13.8341 -5.7337 26 14 -2.9732 -12.2100 -6.2816 27 1 -2.7380 -11.5705 -7.6011 28 1 -3.7852 -13.4397 -6.4652 29 1 -3.6995 -11.2648 -5.3959 30 1 -0.3632 -1.0235 -0.0914 31 1 -0.3633 0.4326 0.9322 32 1 -0.3633 0.5910 -0.8408 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8901 37 1 3.8747 -1.8858 1.8382 38 1 3.4675 -1.9757 0.0415 39 1 -1.0600 -3.4539 2.4535 40 1 -0.6589 -5.1462 2.0742 41 1 0.6229 -4.0197 2.5807 42 1 -1.8646 -4.6184 -0.0489 43 1 -0.9823 -3.6679 -1.2680 44 1 0.8055 -5.3856 -1.3136 45 1 -0.0769 -6.3361 -0.0944 46 1 -2.0023 -6.5368 -1.6433 47 1 -1.1206 -5.5864 -2.8628 48 1 1.5832 -6.6760 -2.4594 49 1 1.4001 -8.1088 -3.4998 50 1 0.7376 -6.5409 -4.0199 51 1 -2.1973 -8.4083 -2.9169 52 1 -1.3461 -7.7456 -4.3328 53 1 -2.0923 -10.2827 -4.8506 54 1 -1.2528 -14.4715 -6.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280871910.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:50 Heat of formation + Delta-G solvation = -62.065472 kcal Electronic energy + Delta-G solvation = -29724.823112 eV Core-core repulsion = 25696.888155 eV Total energy + Delta-G solvation = -4027.934957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.48704 -40.52237 -38.75348 -37.96840 -36.56951 -35.92128 -34.37305 -33.76264 -33.06520 -29.62938 -28.30996 -28.05816 -27.38338 -26.72661 -25.16293 -23.87636 -23.22770 -21.83105 -21.26614 -21.14039 -20.16702 -19.59209 -18.24991 -17.85427 -17.04085 -16.90201 -16.73512 -16.69427 -16.27960 -15.93927 -15.60046 -15.35965 -15.16904 -14.97819 -14.77903 -14.66923 -14.29563 -14.22628 -14.03718 -13.74572 -13.43499 -13.38068 -13.19281 -13.05650 -13.03969 -12.99790 -12.81354 -12.65394 -12.55778 -12.39348 -12.30412 -12.12983 -12.02969 -11.97621 -11.70656 -11.55090 -11.46883 -11.14227 -10.89415 -10.61474 -10.37918 -10.23192 -9.61740 -9.24080 -8.41044 -6.01852 1.30180 1.35595 1.44586 1.47652 1.96007 2.02116 2.23200 2.63666 2.95594 3.14984 3.24566 3.51148 3.71215 3.87213 3.93255 4.00785 4.07266 4.10085 4.20458 4.27130 4.33512 4.35650 4.40619 4.42045 4.46883 4.48121 4.57322 4.58847 4.67081 4.70340 4.72945 4.79513 4.80947 4.86936 4.90334 4.96442 5.01389 5.02689 5.07485 5.15365 5.18973 5.27837 5.30551 5.40922 5.53392 5.58034 5.62344 5.89803 5.99939 6.17914 6.42873 6.60429 6.88828 7.24412 7.40188 7.97948 8.76643 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.001719 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.220567 B =16284.123076 C =16360.035429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.103 4.103 5 H 0.137 0.863 6 C -0.148 4.148 7 C -0.203 4.203 8 H 0.149 0.851 9 C 0.537 3.463 10 O -0.574 6.574 11 N -0.616 5.616 12 C 0.070 3.930 13 C 0.123 3.877 14 C -0.118 4.118 15 C 0.062 3.938 16 N -0.540 5.540 17 C 0.030 3.970 18 C 0.054 3.946 19 C 0.450 3.550 20 O -0.606 6.606 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.054 0.946 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.274 1.274 29 H -0.230 1.230 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.067 0.933 49 H 0.053 0.947 50 H 0.027 0.973 51 H 0.125 0.875 52 H 0.076 0.924 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 32.080 17.546 36.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 C -0.196 4.196 4 C -0.121 4.121 5 H 0.154 0.846 6 C -0.185 4.185 7 C -0.223 4.223 8 H 0.166 0.834 9 C 0.328 3.672 10 O -0.454 6.454 11 N -0.348 5.348 12 C -0.072 4.072 13 C 0.000 4.000 14 C -0.157 4.157 15 C -0.066 4.066 16 N -0.264 5.264 17 C -0.118 4.118 18 C -0.077 4.077 19 C 0.238 3.762 20 O -0.490 6.490 21 N -0.234 5.234 22 C -0.457 4.457 23 H 0.072 0.928 24 C -0.214 4.214 25 N -0.576 5.576 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.199 1.199 29 H -0.153 1.153 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.143 0.857 52 H 0.093 0.907 53 H 0.225 0.775 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.288 31.545 17.617 36.281 hybrid contribution -0.512 -0.436 -1.575 1.713 sum -3.800 31.109 16.042 35.208 Atomic orbital electron populations 1.21787 0.95350 1.00948 1.01482 1.20738 0.95658 0.96342 0.96463 1.21773 1.01131 0.94599 1.02132 1.22504 1.00724 0.88301 1.00582 0.84558 1.23129 0.90266 1.01892 1.03234 1.22557 0.99501 1.00420 0.99848 0.83389 1.20055 0.79651 0.78338 0.89199 1.90674 1.68841 1.63511 1.22414 1.47891 1.36615 1.41285 1.09004 1.22103 1.03215 1.02198 0.79682 1.21370 0.94589 0.93279 0.90805 1.21791 0.98790 0.96700 0.98436 1.22122 0.98311 0.89082 0.97098 1.61507 1.04433 1.21070 1.39425 1.22363 0.92174 1.00259 0.97038 1.21856 0.97434 0.90645 0.97771 1.20913 0.86380 0.87650 0.81231 1.90515 1.25007 1.79737 1.53789 1.42034 1.22000 1.13958 1.45404 1.18997 1.06216 0.91288 1.29212 0.92771 1.26117 1.03422 0.94552 0.97304 1.69806 1.41589 1.07751 1.38415 0.85364 0.77075 0.79431 0.79644 1.18324 1.19941 1.15292 0.94174 0.91791 0.93419 0.92391 0.92372 0.93014 0.91420 0.85556 0.90240 0.90740 0.90022 0.89611 0.87670 0.91455 0.94092 0.91376 0.88271 0.94200 0.91467 0.92785 0.95437 0.85718 0.90650 0.77500 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.72 71.98 0.63 -1.66 16 2 C -0.07 -1.19 2.28 -10.79 -0.02 -1.22 16 3 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16 4 C -0.10 -1.27 5.11 -10.80 -0.06 -1.33 16 5 H 0.14 1.01 8.13 -2.39 -0.02 0.99 16 6 C -0.15 -2.04 9.71 30.59 0.30 -1.74 16 7 C -0.20 -2.78 5.50 -11.54 -0.06 -2.84 16 8 H 0.15 1.16 5.94 -2.38 -0.01 1.14 16 9 C 0.54 10.86 5.29 87.66 0.46 11.33 16 10 O -0.57 -16.06 12.74 -3.06 -0.04 -16.09 16 11 N -0.62 -10.03 2.87 -846.76 -2.43 -12.46 16 12 C 0.07 0.60 10.15 127.77 1.30 1.90 16 13 C 0.12 2.10 5.41 86.38 0.47 2.57 16 14 C -0.12 -2.58 5.46 30.59 0.17 -2.41 16 15 C 0.06 1.39 4.96 86.30 0.43 1.81 16 16 N -0.54 -17.30 4.50 -927.02 -4.17 -21.48 16 17 C 0.03 1.03 8.96 127.69 1.14 2.18 16 18 C 0.05 1.73 5.45 85.56 0.47 2.20 16 19 C 0.45 20.94 7.47 87.66 0.66 21.59 16 20 O -0.61 -34.45 13.91 -3.06 -0.04 -34.49 16 21 N -0.59 -28.46 5.09 -306.98 -1.56 -30.02 16 22 C -0.33 -19.52 10.16 84.04 0.85 -18.66 16 23 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 25 N -0.93 -56.98 13.96 21.66 0.30 -56.68 16 26 Si 0.97 39.14 27.74 68.60 1.90 41.04 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 30 H 0.04 0.81 5.12 -2.39 -0.01 0.80 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.34 6.41 -2.39 -0.02 1.33 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.13 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.53 7.91 -2.38 -0.02 1.51 16 39 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 41 H 0.09 0.52 5.96 -2.39 -0.01 0.51 16 42 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 43 H 0.07 1.38 7.42 -2.39 -0.02 1.37 16 44 H 0.04 1.12 6.55 -2.38 -0.02 1.11 16 45 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.10 1.75 7.93 -2.39 -0.02 1.73 16 47 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 48 H 0.07 2.20 6.47 -2.39 -0.02 2.18 16 49 H 0.05 2.32 5.82 -2.39 -0.01 2.30 16 50 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.12 3.16 7.93 -2.39 -0.02 3.14 16 52 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 53 H 0.39 15.43 5.76 -92.71 -0.53 14.90 16 54 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -83.20 419.56 2.10 -81.10 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.29 Total: 36.81 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.85 Total: 12.28 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -7.87 Total: -120.64 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.08 Total: -50.58 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.90 Total: 41.04 kcal Total: -83.20 2.10 -81.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280871910.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.037 kcal (2) G-P(sol) polarization free energy of solvation -83.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds