Wall clock time and date at job start Sat Apr 11 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 C 1.52998 * 109.46945 * 119.99674 * 2 1 3 5 5 H 1.08997 * 109.47145 * 185.00373 * 4 2 1 6 6 C 1.53001 * 109.47428 * 305.00379 * 4 2 1 7 7 C 1.52999 * 109.47405 * 184.99849 * 6 4 2 8 8 N 1.46500 * 109.47302 * 179.97438 * 7 6 4 9 9 C 1.46496 * 120.00080 * 270.00395 * 8 7 6 10 10 C 1.34783 * 119.99795 * 89.99897 * 8 7 6 11 11 O 1.21278 * 119.99825 * 353.97873 * 10 8 7 12 12 C 1.50692 * 119.99939 * 173.98096 * 10 8 7 13 13 C 1.53002 * 109.60472 * 57.36130 * 12 10 8 14 14 C 1.53345 * 109.60683 * 177.68447 * 12 10 8 15 15 C 1.53398 * 108.24720 * 52.39914 * 14 12 10 16 16 C 1.50168 * 109.98824 * 48.76974 * 15 14 12 17 17 O 1.21289 * 118.24798 * 162.42813 * 16 15 14 18 18 N 1.33352 * 123.50952 * 342.45820 * 16 15 14 19 19 C 1.45755 * 124.10596 * 2.19463 * 18 16 15 20 20 N 1.46506 * 109.47244 * 65.00320 * 4 2 1 21 21 C 1.36934 * 119.99950 * 84.99477 * 20 4 2 22 22 H 1.07999 * 119.99767 * 0.02562 * 21 20 4 23 23 C 1.38813 * 119.99845 * 179.97438 * 21 20 4 24 24 N 1.31619 * 119.99677 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00187 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47408 * 89.99103 * 25 23 21 27 27 H 1.48500 * 109.47116 * 209.99671 * 25 23 21 28 28 H 1.48511 * 109.46981 * 329.99332 * 25 23 21 29 29 H 1.08997 * 109.47202 * 300.00266 * 1 2 3 30 30 H 1.09002 * 109.46764 * 60.00743 * 1 2 3 31 31 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47202 * 239.99734 * 2 1 3 33 33 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47355 * 299.99718 * 3 2 1 35 35 H 1.09005 * 109.47195 * 60.00020 * 3 2 1 36 36 H 1.09002 * 109.47064 * 305.00060 * 6 4 2 37 37 H 1.09005 * 109.47290 * 64.99663 * 6 4 2 38 38 H 1.08993 * 109.47168 * 300.00108 * 7 6 4 39 39 H 1.09008 * 109.46798 * 60.00132 * 7 6 4 40 40 H 1.09005 * 109.47430 * 84.69465 * 9 8 7 41 41 H 1.09007 * 109.46899 * 204.69405 * 9 8 7 42 42 H 1.08995 * 109.47558 * 324.69309 * 9 8 7 43 43 H 1.08996 * 109.47216 * 59.99855 * 13 12 10 44 44 H 1.09001 * 109.47128 * 180.02562 * 13 12 10 45 45 H 1.09007 * 109.46618 * 300.00186 * 13 12 10 46 46 H 1.08994 * 109.67937 * 171.95778 * 14 12 10 47 47 H 1.09003 * 109.67105 * 292.49577 * 14 12 10 48 48 H 1.09005 * 109.31982 * 288.63046 * 15 14 12 49 49 H 1.09001 * 109.38111 * 168.95533 * 15 14 12 50 50 H 0.97002 * 117.94936 * 182.21935 * 18 16 15 51 51 H 1.09003 * 109.30123 * 220.63483 * 19 18 16 52 52 H 1.09002 * 109.13488 * 101.15613 * 19 18 16 53 53 H 0.97001 * 119.99549 * 265.00349 * 20 4 2 54 54 H 0.97005 * 119.99845 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1262 -0.6442 1.2953 6 6 1.4298 -0.0762 2.4954 7 6 2.0341 -0.7142 3.7478 8 7 1.4504 -0.0962 4.9409 9 6 2.0801 1.0846 5.5368 10 6 0.3338 -0.6141 5.4902 11 8 -0.2491 -1.5223 4.9370 12 6 -0.1902 -0.0644 6.7918 13 6 -0.4546 1.4355 6.6463 14 6 -1.4924 -0.7823 7.1665 15 6 -1.2364 -2.2942 7.1251 16 6 0.0153 -2.6239 7.8864 17 8 0.1923 -3.7737 8.2298 18 7 0.9424 -1.7202 8.2056 19 6 0.8382 -0.2990 7.8990 20 7 1.6524 -2.1328 1.1907 21 6 2.4346 -3.0300 0.5136 22 1 3.3373 -2.6970 0.0231 23 6 2.0677 -4.3676 0.4585 24 7 2.8197 -5.2300 -0.1919 25 14 0.5066 -4.9437 1.3074 26 1 -0.6349 -4.8483 0.3624 27 1 0.6718 -6.3535 1.7436 28 1 0.2420 -4.0870 2.4913 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6436 0.9927 2.4929 37 1 0.3508 -0.2309 2.4933 38 1 1.8204 -1.7830 3.7503 39 1 3.1132 -0.5594 3.7498 40 1 1.7307 1.9807 5.0238 41 1 1.8153 1.1438 6.5925 42 1 3.1629 1.0081 5.4376 43 1 -1.1921 1.6000 5.8608 44 1 -0.8331 1.8309 7.5890 45 1 0.4735 1.9444 6.3857 46 1 -1.7966 -0.4901 8.1715 47 1 -2.2746 -0.5188 6.4545 48 1 -1.1244 -2.6128 6.0887 49 1 -2.0814 -2.8166 7.5737 50 1 1.7360 -2.0278 8.6708 51 1 1.8100 0.0713 7.5724 52 1 0.5308 0.2385 8.7960 53 1 0.8417 -2.4319 1.6314 54 1 2.5631 -6.1647 -0.2308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282563390.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:23 Heat of formation + Delta-G solvation = -73.063846 kcal Electronic energy + Delta-G solvation = -32573.084192 eV Core-core repulsion = 28544.672309 eV Total energy + Delta-G solvation = -4028.411883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.42827 -40.43170 -39.15983 -37.60177 -36.89703 -35.13980 -34.47743 -33.17485 -32.54836 -31.15168 -28.13751 -27.93723 -27.32051 -27.01326 -25.24030 -24.85191 -23.80565 -22.92514 -21.34967 -20.11260 -19.66738 -19.57398 -18.42289 -17.80715 -17.03761 -16.91206 -16.76716 -16.70361 -16.34391 -15.75076 -15.66386 -15.30654 -15.07574 -14.95541 -14.78485 -14.66658 -14.60935 -14.45458 -14.00444 -13.80869 -13.52138 -13.39645 -13.21414 -13.10128 -13.03682 -12.87323 -12.81471 -12.65417 -12.61077 -12.24487 -12.21325 -12.12996 -12.08870 -11.82555 -11.71181 -11.51733 -11.43624 -11.18292 -10.94678 -10.88378 -10.45316 -10.07744 -9.61183 -9.22888 -8.05792 -5.33208 1.27175 1.33040 1.39625 1.48218 1.66191 2.00886 2.26937 2.42072 3.27306 3.28265 3.44894 3.59773 3.63226 3.72613 3.91441 4.02023 4.09104 4.14663 4.20623 4.37384 4.41101 4.41916 4.48597 4.52089 4.58328 4.64287 4.68740 4.69312 4.75183 4.83021 4.87261 4.90106 4.92565 4.95888 4.98151 5.08114 5.10944 5.14389 5.19537 5.26355 5.34543 5.38371 5.39694 5.59187 5.61180 5.64516 5.76334 5.81415 6.20354 6.21001 6.46294 7.08078 7.11761 7.23730 7.88506 8.03989 9.16421 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.004397 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.932210 B = 6365.806404 C = 8067.479585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.133 4.133 4 C 0.182 3.818 5 H 0.048 0.952 6 C -0.120 4.120 7 C 0.122 3.878 8 N -0.607 5.607 9 C 0.046 3.954 10 C 0.505 3.495 11 O -0.576 6.576 12 C -0.092 4.092 13 C -0.153 4.153 14 C -0.089 4.089 15 C -0.161 4.161 16 C 0.516 3.484 17 O -0.618 6.618 18 N -0.714 5.714 19 C 0.106 3.894 20 N -0.748 5.748 21 C -0.208 4.208 22 H 0.066 0.934 23 C -0.055 4.055 24 N -0.982 5.982 25 Si 0.933 3.067 26 H -0.281 1.281 27 H -0.302 1.302 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.107 0.893 49 H 0.096 0.904 50 H 0.404 0.596 51 H 0.113 0.887 52 H 0.123 0.877 53 H 0.359 0.641 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 27.080 19.711 33.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 C -0.191 4.191 4 C 0.074 3.926 5 H 0.066 0.934 6 C -0.159 4.159 7 C -0.002 4.002 8 N -0.339 5.339 9 C -0.095 4.095 10 C 0.294 3.706 11 O -0.455 6.455 12 C -0.095 4.095 13 C -0.210 4.210 14 C -0.126 4.126 15 C -0.201 4.201 16 C 0.305 3.695 17 O -0.501 6.501 18 N -0.365 5.365 19 C -0.016 4.016 20 N -0.390 5.390 21 C -0.339 4.339 22 H 0.084 0.916 23 C -0.247 4.247 24 N -0.634 5.634 25 Si 0.763 3.237 26 H -0.208 1.208 27 H -0.229 1.229 28 H -0.195 1.195 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.100 0.900 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.240 0.760 51 H 0.130 0.870 52 H 0.141 0.859 53 H 0.191 0.809 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.369 26.087 19.377 32.936 hybrid contribution -0.502 -2.047 -0.192 2.116 sum -5.872 24.040 19.184 31.312 Atomic orbital electron populations 1.21697 0.95677 1.00076 1.01546 1.21638 0.96087 0.96953 0.98700 1.21777 1.00828 0.94064 1.02431 1.20462 0.97080 0.81909 0.93146 0.93371 1.22092 0.99902 1.00984 0.92876 1.21335 0.97795 0.96716 0.84309 1.47941 1.26588 1.31033 1.28315 1.22824 0.99510 0.86520 1.00616 1.21281 0.80191 0.81936 0.87225 1.90617 1.58436 1.31849 1.64646 1.21210 0.96894 1.00533 0.90892 1.22314 1.05048 0.88572 1.05037 1.21612 0.96054 0.90930 1.04045 1.22139 0.94605 1.00469 1.02873 1.20637 0.86191 0.84494 0.78168 1.90714 1.80004 1.22450 1.56925 1.45441 1.22330 1.09285 1.59416 1.22180 1.00722 0.80082 0.98635 1.42922 1.27436 1.05069 1.63552 1.19053 1.03253 0.88679 1.22911 0.91629 1.25169 1.00898 0.96523 1.02080 1.69827 1.41116 1.02888 1.49546 0.85731 0.81765 0.77009 0.79168 1.20755 1.22912 1.19520 0.91740 0.92475 0.95794 0.94474 0.92711 0.92412 0.90824 0.87889 0.93120 0.94470 0.89276 0.89728 0.86869 0.89947 0.92160 0.87859 0.88001 0.87411 0.90027 0.87547 0.88588 0.75970 0.86977 0.85900 0.80885 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.59 71.98 0.62 -3.56 16 2 C -0.11 -3.69 2.88 -10.80 -0.03 -3.72 16 3 C -0.13 -3.05 8.95 71.98 0.64 -2.40 16 4 C 0.18 6.58 2.06 44.99 0.09 6.68 16 5 H 0.05 1.79 8.08 -2.39 -0.02 1.78 16 6 C -0.12 -3.36 4.28 30.59 0.13 -3.23 16 7 C 0.12 3.50 5.29 86.38 0.46 3.95 16 8 N -0.61 -12.25 2.87 -846.77 -2.43 -14.69 16 9 C 0.05 0.34 8.24 127.77 1.05 1.40 16 10 C 0.50 12.17 5.83 87.65 0.51 12.68 16 11 O -0.58 -20.91 12.73 -3.02 -0.04 -20.95 16 12 C -0.09 -1.20 0.50 -52.84 -0.03 -1.23 16 13 C -0.15 -0.70 8.08 71.98 0.58 -0.12 16 14 C -0.09 -1.41 4.74 30.84 0.15 -1.27 16 15 C -0.16 -4.30 5.42 29.82 0.16 -4.14 16 16 C 0.52 15.26 7.44 87.71 0.65 15.91 16 17 O -0.62 -24.79 17.78 -3.06 -0.05 -24.85 16 18 N -0.71 -13.62 5.35 -467.31 -2.50 -16.13 16 19 C 0.11 0.95 5.46 86.49 0.47 1.42 16 20 N -0.75 -35.94 3.83 -322.93 -1.24 -37.18 16 21 C -0.21 -12.10 10.41 84.03 0.87 -11.22 16 22 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 24 N -0.98 -65.70 13.97 21.65 0.30 -65.39 16 25 Si 0.93 51.40 27.74 68.60 1.90 53.30 16 26 H -0.28 -15.07 7.11 99.48 0.71 -14.37 16 27 H -0.30 -16.96 7.11 99.48 0.71 -16.26 16 28 H -0.27 -14.71 6.52 99.48 0.65 -14.07 16 29 H 0.06 1.76 6.46 -2.39 -0.02 1.75 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 0.89 7.75 -2.39 -0.02 0.88 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.33 6.46 -2.38 -0.02 1.32 16 36 H 0.10 2.08 6.34 -2.39 -0.02 2.06 16 37 H 0.05 1.63 6.65 -2.38 -0.02 1.61 16 38 H 0.04 1.50 7.12 -2.39 -0.02 1.48 16 39 H 0.09 2.25 7.94 -2.38 -0.02 2.23 16 40 H 0.08 0.33 7.57 -2.38 -0.02 0.32 16 41 H 0.11 0.21 2.91 -2.38 -0.01 0.21 16 42 H 0.08 0.51 7.97 -2.39 -0.02 0.49 16 43 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.10 0.09 4.07 -2.38 -0.01 0.08 16 46 H 0.11 1.02 8.13 -2.39 -0.02 1.00 16 47 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.11 3.78 5.22 -2.48 -0.01 3.77 16 49 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.40 7.04 8.80 -92.71 -0.82 6.22 16 51 H 0.11 0.54 5.15 -2.39 -0.01 0.53 16 52 H 0.12 0.18 8.12 -2.39 -0.02 0.16 16 53 H 0.36 18.05 5.66 -92.71 -0.52 17.53 16 54 H 0.25 16.44 8.31 -92.70 -0.77 15.67 16 Total: -1.00 -92.09 400.61 2.27 -89.83 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.48 Total: 27.88 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.81 Total: 8.17 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -5.87 Total: -133.38 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.09 Total: -45.80 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 1.90 Total: 53.30 kcal Total: -92.09 2.27 -89.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282563390.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.762 kcal (2) G-P(sol) polarization free energy of solvation -92.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds