Wall clock time and date at job start Sat Apr 11 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47278 * 2 1 4 4 C 1.53007 * 109.47099 * 119.99951 * 2 1 3 5 5 H 1.09005 * 109.46926 * 184.99697 * 4 2 1 6 6 C 1.53001 * 109.46917 * 64.99887 * 4 2 1 7 7 C 1.52999 * 109.46735 * 174.99996 * 6 4 2 8 8 N 1.46501 * 109.47122 * 179.97438 * 7 6 4 9 9 C 1.46496 * 120.00280 * 270.00025 * 8 7 6 10 10 C 1.34778 * 119.99710 * 90.00124 * 8 7 6 11 11 O 1.21284 * 119.99915 * 6.12170 * 10 8 7 12 12 C 1.50696 * 119.99972 * 186.12327 * 10 8 7 13 13 C 1.52994 * 109.60293 * 304.48147 * 12 10 8 14 14 C 1.53350 * 109.60396 * 184.15443 * 12 10 8 15 15 C 1.53069 * 108.42567 * 172.71338 * 14 12 10 16 16 C 1.50172 * 109.89084 * 48.89937 * 15 14 12 17 17 O 1.21289 * 118.24316 * 162.13190 * 16 15 14 18 18 N 1.33355 * 123.51086 * 342.41662 * 16 15 14 19 19 C 1.45746 * 124.10380 * 2.22721 * 18 16 15 20 20 N 1.46502 * 109.47030 * 304.99595 * 4 2 1 21 21 C 1.36931 * 120.00302 * 275.00065 * 20 4 2 22 22 H 1.08007 * 120.00149 * 0.02562 * 21 20 4 23 23 C 1.38809 * 120.00297 * 179.97438 * 21 20 4 24 24 N 1.31624 * 119.99668 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00151 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47021 * 90.00503 * 25 23 21 27 27 H 1.48498 * 109.47079 * 210.00382 * 25 23 21 28 28 H 1.48500 * 109.47042 * 330.00164 * 25 23 21 29 29 H 1.09005 * 109.47074 * 300.00244 * 1 2 3 30 30 H 1.08999 * 109.47048 * 59.99632 * 1 2 3 31 31 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47074 * 239.99755 * 2 1 3 33 33 H 1.08996 * 109.47823 * 60.00106 * 3 2 1 34 34 H 1.09004 * 109.47334 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.46980 * 299.99628 * 3 2 1 36 36 H 1.08995 * 109.47458 * 55.00206 * 6 4 2 37 37 H 1.08998 * 109.46839 * 294.99508 * 6 4 2 38 38 H 1.09002 * 109.47315 * 60.00096 * 7 6 4 39 39 H 1.08996 * 109.47445 * 300.00043 * 7 6 4 40 40 H 1.08990 * 109.47526 * 267.73643 * 9 8 7 41 41 H 1.08999 * 109.47002 * 27.74514 * 9 8 7 42 42 H 1.09007 * 109.46910 * 147.74031 * 9 8 7 43 43 H 1.09000 * 109.46914 * 299.67424 * 13 12 10 44 44 H 1.08996 * 109.47245 * 59.67747 * 13 12 10 45 45 H 1.08999 * 109.47464 * 179.68005 * 13 12 10 46 46 H 1.08997 * 109.66966 * 52.97744 * 14 12 10 47 47 H 1.08994 * 109.70704 * 292.46658 * 14 12 10 48 48 H 1.09004 * 109.39944 * 288.77290 * 15 14 12 49 49 H 1.08996 * 109.33295 * 168.99146 * 15 14 12 50 50 H 0.96996 * 117.94459 * 182.19618 * 18 16 15 51 51 H 1.09001 * 109.30309 * 220.60640 * 19 18 16 52 52 H 1.09005 * 109.13794 * 101.12923 * 19 18 16 53 53 H 0.97002 * 119.99476 * 95.00127 * 20 4 2 54 54 H 0.97000 * 119.99386 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1264 -0.6444 1.2952 6 6 1.6352 -2.1955 1.1880 7 6 2.2502 -2.9428 2.3730 8 7 1.8621 -4.3543 2.3147 9 6 0.6378 -4.8055 2.9808 10 6 2.6315 -5.2377 1.6483 11 8 3.6995 -4.8884 1.1919 12 6 2.1647 -6.6595 1.4702 13 6 1.8556 -7.2733 2.8371 14 6 3.2598 -7.4772 0.7747 15 6 2.8366 -8.9482 0.7712 16 6 1.4236 -9.0723 0.2781 17 8 1.0407 -10.1595 -0.0992 18 7 0.5689 -8.0498 0.2278 19 6 0.9087 -6.6818 0.5982 20 7 1.4559 -0.1036 2.4424 21 6 2.0442 1.0002 2.9997 22 1 2.9386 1.4158 2.5594 23 6 1.4904 1.5858 4.1299 24 7 0.4001 1.0797 4.6662 25 14 2.2934 3.0912 4.8905 26 1 1.7230 4.3185 4.2793 27 1 2.0383 3.1023 6.3534 28 1 3.7571 3.0494 4.6436 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.9948 -2.6326 0.2566 37 1 0.5491 -2.2761 1.2317 38 1 1.8905 -2.5057 3.3045 39 1 3.3363 -2.8622 2.3293 40 1 0.8752 -5.1376 3.9913 41 1 -0.0753 -3.9824 3.0268 42 1 0.2025 -5.6324 2.4195 43 1 2.7568 -7.2671 3.4502 44 1 1.0772 -6.6905 3.3294 45 1 1.5129 -8.2995 2.7055 46 1 4.1995 -7.3669 1.3157 47 1 3.3836 -7.1286 -0.2506 48 1 2.9030 -9.3464 1.7838 49 1 3.4997 -9.5130 0.1160 50 1 -0.3353 -8.2277 -0.0747 51 1 0.0787 -6.2414 1.1507 52 1 1.0878 -6.1006 -0.3064 53 1 0.6524 -0.4766 2.8376 54 1 0.0135 1.4887 5.4561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282563392.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:31 Heat of formation + Delta-G solvation = -77.324982 kcal Electronic energy + Delta-G solvation = -31628.433151 eV Core-core repulsion = 27599.836492 eV Total energy + Delta-G solvation = -4028.596659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.30657 -40.62088 -39.01366 -37.74917 -36.78527 -34.72295 -34.45023 -33.17608 -31.88862 -30.82084 -28.48251 -27.93471 -27.61079 -26.86588 -25.56709 -25.11721 -23.60324 -22.50458 -20.87612 -20.21232 -19.32151 -19.11551 -18.34801 -17.88388 -17.22713 -17.05792 -16.56734 -16.40341 -16.17740 -15.92356 -15.54769 -15.47422 -15.30844 -15.01274 -14.71806 -14.67792 -14.60423 -14.01846 -13.97294 -13.76273 -13.49668 -13.29886 -12.97364 -12.92619 -12.90392 -12.84733 -12.74030 -12.70030 -12.36383 -12.32821 -12.09982 -12.02662 -11.96887 -11.80643 -11.67140 -11.59630 -11.22876 -11.13842 -10.83912 -10.81590 -10.66222 -10.12647 -9.61063 -8.83489 -7.83788 -5.06221 1.48777 1.51099 1.51444 1.56752 1.58042 1.96568 2.29816 2.62691 3.26519 3.39629 3.49938 3.59372 3.63519 3.91516 3.98713 4.02321 4.06298 4.13901 4.23759 4.31465 4.37244 4.43663 4.49850 4.51509 4.60010 4.66413 4.68762 4.72629 4.78682 4.80673 4.89127 4.90454 4.94199 4.99484 5.05944 5.07302 5.10127 5.14677 5.22834 5.28320 5.31834 5.43733 5.47148 5.58145 5.62881 5.67195 5.78574 5.83690 6.23747 6.39305 6.43756 7.13580 7.16143 7.47577 8.22861 8.48734 9.39342 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002600 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.773844 B =10767.069416 C =11287.358354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.180 3.820 5 H 0.031 0.969 6 C -0.116 4.116 7 C 0.127 3.873 8 N -0.605 5.605 9 C 0.052 3.948 10 C 0.524 3.476 11 O -0.574 6.574 12 C -0.087 4.087 13 C -0.167 4.167 14 C -0.095 4.095 15 C -0.129 4.129 16 C 0.520 3.480 17 O -0.604 6.604 18 N -0.703 5.703 19 C 0.117 3.883 20 N -0.718 5.718 21 C -0.208 4.208 22 H 0.068 0.932 23 C -0.071 4.071 24 N -0.964 5.964 25 Si 0.949 3.051 26 H -0.294 1.294 27 H -0.301 1.301 28 H -0.277 1.277 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.120 0.880 49 H 0.109 0.891 50 H 0.409 0.591 51 H 0.118 0.882 52 H 0.073 0.927 53 H 0.376 0.624 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -18.066 -7.175 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.071 3.929 5 H 0.049 0.951 6 C -0.155 4.155 7 C 0.005 3.995 8 N -0.336 5.336 9 C -0.089 4.089 10 C 0.312 3.688 11 O -0.453 6.453 12 C -0.091 4.091 13 C -0.224 4.224 14 C -0.133 4.133 15 C -0.169 4.169 16 C 0.308 3.692 17 O -0.486 6.486 18 N -0.354 5.354 19 C -0.007 4.007 20 N -0.358 5.358 21 C -0.341 4.341 22 H 0.086 0.914 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.781 3.219 26 H -0.222 1.222 27 H -0.228 1.228 28 H -0.202 1.202 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.138 0.862 49 H 0.128 0.872 50 H 0.247 0.753 51 H 0.135 0.865 52 H 0.091 0.909 53 H 0.208 0.792 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.349 -18.231 -7.471 19.705 hybrid contribution -0.076 1.325 0.719 1.510 sum -0.426 -16.905 -6.752 18.209 Atomic orbital electron populations 1.21620 0.95225 1.01136 1.00514 1.21629 0.96449 0.96324 0.98343 1.21798 0.99587 0.97265 1.01140 1.20361 0.95289 0.90611 0.86677 0.95096 1.21974 1.01231 0.94435 0.97901 1.21277 0.99534 0.79388 0.99343 1.47921 1.25339 1.07936 1.52404 1.22695 0.85701 1.02271 0.98250 1.20666 0.83703 0.87246 0.77191 1.90700 1.23725 1.80112 1.50773 1.20995 0.97240 0.91679 0.99142 1.22468 1.04211 1.02398 0.93302 1.21462 0.97904 0.92533 1.01414 1.21716 0.91932 0.97987 1.05238 1.20521 0.88898 0.83138 0.76616 1.90759 1.79022 1.27947 1.50869 1.45305 1.15419 1.08023 1.66642 1.21686 0.97081 0.82741 0.99159 1.42440 1.31302 1.32392 1.29674 1.19416 1.05841 1.03426 1.05380 0.91361 1.25201 0.99019 1.02095 0.99981 1.69752 1.23628 1.43686 1.24544 0.85486 0.78215 0.80998 0.77211 1.22225 1.22771 1.20232 0.94440 0.93202 0.92303 0.91367 0.93091 0.94179 0.93143 0.91558 0.90823 0.90786 0.92553 0.90784 0.90366 0.87398 0.91601 0.88304 0.90492 0.89981 0.91330 0.86198 0.87248 0.75345 0.86487 0.90857 0.79155 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.74 71.98 0.63 -3.34 16 2 C -0.11 -3.45 2.74 -10.79 -0.03 -3.48 16 3 C -0.14 -4.92 8.46 71.98 0.61 -4.31 16 4 C 0.18 6.40 2.13 44.99 0.10 6.50 16 5 H 0.03 1.22 8.08 -2.38 -0.02 1.20 16 6 C -0.12 -3.34 4.71 30.59 0.14 -3.20 16 7 C 0.13 3.75 5.33 86.38 0.46 4.21 16 8 N -0.60 -13.16 2.87 -846.78 -2.43 -15.59 16 9 C 0.05 0.73 8.56 127.77 1.09 1.82 16 10 C 0.52 11.89 6.46 87.66 0.57 12.46 16 11 O -0.57 -18.11 15.50 -3.04 -0.05 -18.15 16 12 C -0.09 -1.28 0.49 -52.84 -0.03 -1.30 16 13 C -0.17 -1.84 7.45 71.98 0.54 -1.30 16 14 C -0.10 -1.48 4.31 30.73 0.13 -1.35 16 15 C -0.13 -1.76 5.39 29.71 0.16 -1.60 16 16 C 0.52 9.27 6.91 87.71 0.61 9.87 16 17 O -0.60 -16.04 17.78 -3.06 -0.05 -16.09 16 18 N -0.70 -8.84 5.32 -467.32 -2.49 -11.32 16 19 C 0.12 1.31 5.60 86.49 0.48 1.79 16 20 N -0.72 -31.54 3.54 -322.92 -1.14 -32.68 16 21 C -0.21 -10.55 7.75 84.03 0.65 -9.90 16 22 H 0.07 3.46 7.32 -2.91 -0.02 3.44 16 23 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 24 N -0.96 -55.01 13.06 21.65 0.28 -54.73 16 25 Si 0.95 44.85 29.55 68.60 2.03 46.88 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 29 H 0.04 1.42 7.47 -2.38 -0.02 1.40 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.59 6.68 -2.39 -0.02 1.57 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 2.14 5.99 -2.39 -0.01 2.12 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.98 6.81 -2.39 -0.02 1.96 16 38 H 0.07 2.47 7.68 -2.39 -0.02 2.45 16 39 H 0.06 1.94 7.35 -2.39 -0.02 1.92 16 40 H 0.07 0.93 7.16 -2.39 -0.02 0.91 16 41 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 42 H 0.11 0.86 2.98 -2.38 -0.01 0.85 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.85 3.76 -2.39 -0.01 0.84 16 45 H 0.08 0.74 5.81 -2.39 -0.01 0.73 16 46 H 0.08 1.40 7.97 -2.39 -0.02 1.39 16 47 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 48 H 0.12 1.27 6.96 -2.38 -0.02 1.25 16 49 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.41 4.26 8.80 -92.71 -0.82 3.45 16 51 H 0.12 0.78 5.16 -2.39 -0.01 0.77 16 52 H 0.07 0.92 8.11 -2.38 -0.02 0.90 16 53 H 0.38 17.62 7.80 -92.71 -0.72 16.89 16 54 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -69.49 402.86 2.11 -67.39 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.62 Total: 30.79 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.58 Total: 3.51 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -5.78 Total: -114.32 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.10 Total: -34.25 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.49 2.11 -67.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282563392.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.938 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds