Wall clock time and date at job start Sat Apr 11 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46852 * 2 1 4 4 C 1.53004 * 109.47255 * 120.00272 * 2 1 3 5 5 H 1.09002 * 109.47009 * 185.77647 * 4 2 1 6 6 C 1.50702 * 109.46579 * 305.77523 * 4 2 1 7 7 O 1.21275 * 119.99834 * 93.38317 * 6 4 2 8 8 N 1.34777 * 119.99906 * 273.37567 * 6 4 2 9 9 C 1.46499 * 119.99969 * 175.40629 * 8 6 4 10 10 C 1.53001 * 109.47032 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.67647 * 61.51997 * 10 9 8 12 12 C 1.53298 * 109.67761 * 182.06896 * 10 9 8 13 13 O 1.42971 * 109.21899 * 172.03028 * 12 10 9 14 14 C 1.42962 * 114.16402 * 297.42066 * 13 12 10 15 15 C 1.53291 * 109.22599 * 62.58018 * 14 13 12 16 16 N 1.47147 * 109.68371 * 300.99915 * 10 9 8 17 17 C 1.36935 * 120.98455 * 9.75935 * 16 10 9 18 18 H 1.07996 * 120.00195 * 330.15314 * 17 16 10 19 19 C 1.38814 * 120.00144 * 150.14511 * 17 16 10 20 20 N 1.31624 * 119.99806 * 350.75827 * 19 17 16 21 21 Si 1.86796 * 120.00247 * 170.75307 * 19 17 16 22 22 H 1.48504 * 109.46917 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47032 * 119.99956 * 21 19 17 24 24 H 1.48498 * 109.47213 * 240.00579 * 21 19 17 25 25 N 1.46896 * 109.46948 * 65.77467 * 4 2 1 26 26 C 1.48530 * 111.00323 * 58.64258 * 25 4 2 27 27 C 1.54937 * 103.22766 * 159.71677 * 26 25 4 28 28 C 1.54598 * 102.92127 * 322.58478 * 27 26 25 29 29 C 1.47907 * 110.99561 * 176.04110 * 25 4 2 30 30 H 1.08996 * 109.47005 * 305.98272 * 1 2 3 31 31 H 1.09000 * 109.47439 * 65.98670 * 1 2 3 32 32 H 1.09007 * 109.46872 * 185.98703 * 1 2 3 33 33 H 1.09006 * 109.46728 * 239.99942 * 2 1 3 34 34 H 1.09008 * 109.46771 * 177.85225 * 3 2 1 35 35 H 1.08996 * 109.47310 * 297.84701 * 3 2 1 36 36 H 1.08992 * 109.47164 * 57.85069 * 3 2 1 37 37 H 0.97002 * 119.99902 * 355.41356 * 8 6 4 38 38 H 1.09003 * 109.47535 * 300.00632 * 9 8 6 39 39 H 1.09004 * 109.46790 * 60.00789 * 9 8 6 40 40 H 1.08999 * 109.51484 * 291.95085 * 12 10 9 41 41 H 1.08994 * 109.51207 * 52.11032 * 12 10 9 42 42 H 1.09010 * 109.51282 * 302.65433 * 14 13 12 43 43 H 1.09001 * 109.55108 * 182.53260 * 14 13 12 44 44 H 1.09002 * 109.68376 * 187.97113 * 15 14 13 45 45 H 1.09004 * 109.70872 * 67.44039 * 15 14 13 46 46 H 0.97000 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.09000 * 110.66833 * 278.15346 * 26 25 4 48 48 H 1.09005 * 110.66591 * 41.28215 * 26 25 4 49 49 H 1.08998 * 110.72133 * 204.23072 * 27 26 25 50 50 H 1.08995 * 110.72244 * 80.94363 * 27 26 25 51 51 H 1.08996 * 110.30925 * 263.03735 * 28 27 26 52 52 H 1.09004 * 110.30786 * 140.87097 * 28 27 26 53 53 H 1.09000 * 109.91433 * 333.50127 * 29 25 4 54 54 H 1.09000 * 109.92106 * 94.80222 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1251 -0.6326 1.3024 6 6 1.4243 -0.0982 2.4755 7 8 0.4055 -0.5602 2.9438 8 7 2.0060 0.9723 3.0518 9 6 1.3553 1.6396 4.1820 10 6 2.2173 2.8160 4.6448 11 1 2.3164 3.5391 3.8353 12 6 1.5664 3.4863 5.8601 13 8 2.4645 4.4603 6.3975 14 6 3.6945 3.9173 6.8833 15 6 4.4543 3.2690 5.7204 16 7 3.5485 2.3295 5.0405 17 6 3.9332 1.0407 4.7834 18 1 3.1946 0.2535 4.7479 19 6 5.2725 0.7459 4.5682 20 7 6.1468 1.7200 4.4300 21 14 5.8340 -1.0332 4.4748 22 1 4.6658 -1.9313 4.6597 23 1 6.4493 -1.2891 3.1477 24 1 6.8329 -1.2937 5.5422 25 7 1.6675 -2.1406 1.1815 26 6 2.2307 -2.7814 -0.0344 27 6 2.2066 -4.2903 0.3166 28 6 2.5724 -4.3017 1.8187 29 6 2.2256 -2.8903 2.3278 30 1 -0.3633 0.6038 0.8316 31 1 -0.3634 0.4182 -0.9387 32 1 -0.3633 -1.0221 0.1072 33 1 1.8933 -0.5139 -0.8900 34 1 3.1293 1.4427 0.0385 35 1 1.7085 1.9451 -0.9086 36 1 1.6455 1.9673 0.8700 37 1 2.8555 1.3009 2.7181 38 1 0.3765 2.0063 3.8730 39 1 1.2358 0.9316 5.0022 40 1 0.6407 3.9739 5.5546 41 1 1.3495 2.7337 6.6182 42 1 3.4852 3.1663 7.6452 43 1 4.3000 4.7144 7.3145 44 1 5.3216 2.7310 6.1030 45 1 4.7792 4.0380 5.0195 46 1 7.0826 1.5141 4.2793 47 1 1.6031 -2.5782 -0.9021 48 1 3.2521 -2.4434 -0.2093 49 1 2.9508 -4.8336 -0.2657 50 1 1.2120 -4.7072 0.1587 51 1 3.6365 -4.4996 1.9474 52 1 1.9811 -5.0501 2.3464 53 1 3.1259 -2.3955 2.6921 54 1 1.4854 -2.9547 3.1253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326670168.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:35 Heat of formation + Delta-G solvation = -65.377853 kcal Electronic energy + Delta-G solvation = -33135.692980 eV Core-core repulsion = 29107.614387 eV Total energy + Delta-G solvation = -4028.078593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52448 -40.21751 -39.14422 -36.95766 -36.48005 -35.27506 -33.24696 -32.25620 -32.09246 -29.89556 -29.08960 -28.14992 -27.75063 -26.16545 -25.25939 -23.50979 -22.73264 -22.22191 -21.43679 -21.25341 -20.32145 -18.70701 -17.97669 -17.73115 -17.36236 -17.05518 -16.80598 -16.44081 -16.28315 -15.98878 -15.72283 -15.46398 -15.16582 -14.85198 -14.75229 -14.60068 -14.50470 -14.23274 -14.01420 -13.56331 -13.32905 -13.20311 -13.14377 -13.03773 -12.92570 -12.80699 -12.77857 -12.49760 -12.30833 -12.23395 -12.12138 -12.01506 -11.89574 -11.87976 -11.77128 -11.67539 -11.47749 -11.33719 -10.81368 -10.61275 -10.47668 -9.77605 -9.44096 -8.65574 -7.90257 -5.40051 1.31023 1.38439 1.44552 1.76288 2.25056 2.39852 2.93641 3.02598 3.24927 3.41804 3.58694 3.69738 3.83146 3.91178 3.98056 4.02469 4.06971 4.20148 4.24218 4.30445 4.33420 4.39250 4.46245 4.54592 4.58970 4.62212 4.64756 4.65390 4.69036 4.73844 4.80077 4.85338 4.92793 4.96976 4.99285 5.00792 5.06090 5.10519 5.12473 5.15500 5.26049 5.30532 5.37433 5.49938 5.58931 5.65319 5.67435 5.80771 5.93258 6.27086 6.35364 6.75489 7.08087 7.41511 7.73758 8.28842 9.13601 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004732 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.409416 B = 5915.542641 C = 7230.850025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.154 4.154 4 C 0.065 3.935 5 H 0.047 0.953 6 C 0.519 3.481 7 O -0.569 6.569 8 N -0.699 5.699 9 C 0.144 3.856 10 C 0.127 3.873 11 H 0.039 0.961 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.148 3.852 16 N -0.605 5.605 17 C -0.235 4.235 18 H 0.068 0.932 19 C -0.033 4.033 20 N -0.925 5.925 21 Si 0.936 3.064 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.293 1.293 25 N -0.497 5.497 26 C 0.029 3.971 27 C -0.111 4.111 28 C -0.128 4.128 29 C 0.032 3.968 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.409 0.591 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.007 0.993 46 H 0.250 0.750 47 H 0.103 0.897 48 H 0.045 0.955 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.067 0.933 52 H 0.081 0.919 53 H 0.015 0.985 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 -4.240 -9.071 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.212 4.212 4 C -0.047 4.047 5 H 0.064 0.936 6 C 0.306 3.694 7 O -0.448 6.448 8 N -0.351 5.351 9 C 0.019 3.981 10 C 0.021 3.979 11 H 0.056 0.944 12 C -0.021 4.021 13 O -0.315 6.315 14 C -0.032 4.032 15 C 0.022 3.978 16 N -0.331 5.331 17 C -0.365 4.365 18 H 0.085 0.915 19 C -0.230 4.230 20 N -0.571 5.571 21 Si 0.766 3.234 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.220 1.220 25 N -0.221 5.221 26 C -0.098 4.098 27 C -0.149 4.149 28 C -0.167 4.167 29 C -0.096 4.096 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.122 0.878 44 H 0.089 0.911 45 H 0.025 0.975 46 H 0.059 0.941 47 H 0.121 0.879 48 H 0.063 0.937 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.086 0.914 52 H 0.099 0.901 53 H 0.034 0.966 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.471 -4.381 -8.747 12.941 hybrid contribution 2.333 -0.798 0.441 2.505 sum -6.139 -5.179 -8.306 11.554 Atomic orbital electron populations 1.21661 0.93798 1.02167 1.01066 1.21097 0.97258 0.95946 0.94977 1.21961 1.01019 0.95253 1.02930 1.21926 0.97221 0.90651 0.94940 0.93556 1.20519 0.84268 0.79991 0.84668 1.90604 1.26248 1.62789 1.65208 1.46188 1.25127 1.30877 1.32862 1.21062 0.95040 0.93368 0.88585 1.21542 0.86460 0.94055 0.95845 0.94356 1.22984 0.92621 0.91928 0.94546 1.87806 1.29002 1.34518 1.80193 1.23224 0.85659 0.98321 0.96004 1.21291 0.93254 0.91374 0.91859 1.44298 1.12316 1.09410 1.67055 1.19326 0.91738 0.84799 1.40605 0.91451 1.25536 0.97522 0.98958 1.00937 1.70079 1.02096 1.30744 1.54217 0.85681 0.77996 0.82623 0.77124 1.20235 1.21491 1.22020 1.64609 1.55105 0.99611 1.02814 1.23445 0.98418 0.94623 0.93325 1.22463 1.03158 0.95030 0.94272 1.22406 1.01570 0.94911 0.97764 1.22839 0.96694 0.95353 0.94696 0.95006 0.90969 0.92244 0.88173 0.92796 0.89898 0.93433 0.75365 0.90402 0.93699 0.86432 0.93481 0.94022 0.87752 0.91129 0.97492 0.94071 0.87890 0.93681 0.88824 0.89879 0.91375 0.90060 0.96628 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.50 71.98 0.61 -2.68 16 2 C -0.07 -1.84 2.53 -10.79 -0.03 -1.87 16 3 C -0.15 -3.75 8.72 71.98 0.63 -3.12 16 4 C 0.06 2.06 1.33 44.17 0.06 2.12 16 5 H 0.05 1.60 7.98 -2.39 -0.02 1.58 16 6 C 0.52 19.49 4.64 87.66 0.41 19.89 16 7 O -0.57 -24.38 15.54 -3.01 -0.05 -24.42 16 8 N -0.70 -26.42 2.56 -463.06 -1.18 -27.60 16 9 C 0.14 5.27 4.46 86.38 0.39 5.66 16 10 C 0.13 4.84 3.23 44.97 0.15 4.98 16 11 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 12 C 0.06 1.92 6.29 72.08 0.45 2.38 16 13 O -0.40 -14.60 10.74 -148.98 -1.60 -16.20 16 14 C 0.05 1.70 6.98 72.08 0.50 2.21 16 15 C 0.15 6.72 5.39 86.35 0.47 7.19 16 16 N -0.60 -27.67 3.04 -673.73 -2.05 -29.72 16 17 C -0.23 -11.63 7.03 84.03 0.59 -11.04 16 18 H 0.07 3.46 5.71 -2.91 -0.02 3.44 16 19 C -0.03 -1.72 5.10 84.86 0.43 -1.28 16 20 N -0.92 -50.29 10.94 21.65 0.24 -50.06 16 21 Si 0.94 43.16 29.56 68.60 2.03 45.19 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 N -0.50 -14.97 4.18 -862.22 -3.61 -18.58 16 26 C 0.03 0.64 5.35 86.65 0.46 1.11 16 27 C -0.11 -2.14 7.06 31.80 0.22 -1.91 16 28 C -0.13 -3.12 6.93 31.47 0.22 -2.90 16 29 C 0.03 1.07 5.78 86.45 0.50 1.57 16 30 H 0.03 0.95 7.05 -2.39 -0.02 0.93 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.64 7.62 -2.38 -0.02 1.62 16 33 H 0.10 2.06 6.61 -2.38 -0.02 2.05 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.31 6.61 -2.39 -0.02 1.30 16 37 H 0.41 16.47 6.91 -92.71 -0.64 15.83 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.04 1.83 7.67 -2.39 -0.02 1.81 16 40 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.07 3.60 6.17 -2.39 -0.01 3.58 16 45 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 47 H 0.10 1.90 7.52 -2.39 -0.02 1.88 16 48 H 0.04 1.01 8.01 -2.38 -0.02 0.99 16 49 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 53 H 0.02 0.59 7.67 -2.39 -0.02 0.57 16 54 H 0.06 2.22 7.90 -2.39 -0.02 2.20 16 Total: -1.00 -61.90 402.94 0.06 -61.83 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.23 Total: 37.26 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 6.06 Total: 22.29 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -6.60 Total: -125.95 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.65 Total: -40.62 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.90 0.06 -61.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326670168.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.547 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds