Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 C 1.53000 * 109.46907 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.46842 * 111.00068 * 290.41410 * 5 4 3 7 7 C 1.53037 * 109.52403 * 174.15837 * 6 5 4 8 8 C 1.53125 * 109.27630 * 59.17963 * 7 6 5 9 9 C 1.53120 * 109.15655 * 302.34412 * 8 7 6 10 10 C 1.46843 * 110.99872 * 166.19908 * 5 4 3 11 11 H 1.08992 * 109.45206 * 65.83124 * 10 5 4 12 12 C 1.53006 * 109.46561 * 305.85595 * 10 5 4 13 13 N 1.46500 * 109.47033 * 305.99784 * 12 10 5 14 14 C 1.34774 * 119.99988 * 184.40596 * 13 12 10 15 15 O 1.21346 * 119.99826 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99990 * 179.97438 * 14 13 12 17 17 O 1.21352 * 120.00253 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99671 * 179.97438 * 16 14 13 19 19 C 1.46507 * 119.99934 * 180.02562 * 18 16 14 20 20 C 1.52992 * 109.47312 * 180.02562 * 19 18 16 21 21 C 1.50700 * 109.47081 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00119 * 0.02562 * 21 20 19 23 23 C 1.37876 * 119.99944 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00434 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99976 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47301 * 90.00072 * 25 23 21 27 27 H 1.48505 * 109.46954 * 209.99518 * 25 23 21 28 28 H 1.48493 * 109.47085 * 329.99450 * 25 23 21 29 29 H 1.09009 * 109.47349 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.47589 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47143 * 299.99800 * 1 2 3 32 32 H 1.09004 * 109.46549 * 240.00497 * 2 1 3 33 33 H 1.08997 * 109.47098 * 120.00488 * 2 1 3 34 34 H 1.09005 * 109.46642 * 60.00265 * 3 2 1 35 35 H 1.08997 * 109.47456 * 300.00269 * 3 2 1 36 36 H 1.08997 * 109.47355 * 60.00296 * 4 3 2 37 37 H 1.09005 * 109.47030 * 300.00135 * 4 3 2 38 38 H 1.09004 * 109.46602 * 54.14145 * 6 5 4 39 39 H 1.09002 * 109.46238 * 294.17435 * 6 5 4 40 40 H 1.08990 * 109.50400 * 299.23803 * 7 6 5 41 41 H 1.09005 * 109.50236 * 179.11672 * 7 6 5 42 42 H 1.08997 * 109.52185 * 62.25097 * 8 7 6 43 43 H 1.08998 * 109.51788 * 182.44281 * 8 7 6 44 44 H 1.09001 * 109.49977 * 177.59628 * 9 8 7 45 45 H 1.09002 * 109.50444 * 297.71519 * 9 8 7 46 46 H 1.08997 * 109.46895 * 65.99512 * 12 10 5 47 47 H 1.08992 * 109.47121 * 185.99594 * 12 10 5 48 48 H 0.97006 * 120.00322 * 4.39607 * 13 12 10 49 49 H 0.97000 * 120.00681 * 0.02562 * 18 16 14 50 50 H 1.09005 * 109.47060 * 300.00292 * 19 18 16 51 51 H 1.09003 * 109.47160 * 59.99845 * 19 18 16 52 52 H 1.08996 * 109.47185 * 299.99937 * 20 19 18 53 53 H 1.09003 * 109.47211 * 59.99782 * 20 19 18 54 54 H 0.96999 * 120.00529 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.7839 3.4837 -1.2843 7 6 4.1739 4.9610 -1.1979 8 6 5.6625 5.0716 -0.8563 9 6 5.9316 4.3387 0.4609 10 6 5.4905 2.8795 0.3264 11 1 6.0618 2.3991 -0.4678 12 6 5.7391 2.1480 1.6471 13 7 4.8639 2.7008 2.6838 14 6 4.9708 2.2698 3.9562 15 8 5.7916 1.4234 4.2432 16 6 4.0783 2.8342 5.0138 17 8 3.2571 3.6802 4.7268 18 7 4.1849 2.4027 6.2862 19 6 3.3097 2.9555 7.3229 20 6 3.6346 2.3010 8.6670 21 6 2.7347 2.8701 9.7335 22 1 2.0038 3.6231 9.4780 23 6 2.8438 2.4288 11.0352 24 7 2.0582 2.9251 11.9659 25 14 4.1076 1.1260 11.4769 26 1 5.3846 1.7830 11.8548 27 1 3.6086 0.3198 12.6199 28 1 4.3341 0.2395 10.3074 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9283 0.8891 38 1 2.7213 3.4015 -1.5134 39 1 4.3633 3.0005 -2.0710 40 1 3.5851 5.4480 -0.4208 41 1 3.9836 5.4443 -2.1563 42 1 6.2535 4.6189 -1.6524 43 1 5.9349 6.1218 -0.7511 44 1 6.9970 4.3774 0.6877 45 1 5.3702 4.8160 1.2642 46 1 5.5264 1.0866 1.5202 47 1 6.7799 2.2771 1.9436 48 1 4.2075 3.3773 2.4544 49 1 4.8411 1.7262 6.5156 50 1 3.4673 4.0317 7.3956 51 1 2.2695 2.7574 7.0639 52 1 3.4773 1.2249 8.5946 53 1 4.6747 2.4995 8.9258 54 1 2.1352 2.6149 12.8817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327968852.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -115.922313 kcal Electronic energy + Delta-G solvation = -30244.389593 eV Core-core repulsion = 26214.119228 eV Total energy + Delta-G solvation = -4030.270365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76248 -40.59128 -39.41344 -36.96187 -36.54662 -35.88724 -34.77857 -33.86861 -32.26658 -32.11097 -29.52890 -28.27804 -27.09651 -25.46574 -24.69627 -23.36469 -22.65889 -22.20477 -21.69299 -21.49015 -20.38125 -19.55419 -19.01373 -17.87761 -17.29367 -17.01480 -16.66446 -16.50040 -16.20811 -16.13993 -15.96097 -15.67006 -15.18774 -15.15602 -14.95218 -14.78163 -14.56070 -14.48914 -14.34618 -14.03941 -13.69190 -13.39059 -13.30216 -13.15182 -13.06124 -12.87131 -12.80590 -12.23899 -12.22095 -12.18997 -12.16594 -12.02611 -11.83595 -11.78190 -11.61126 -11.51083 -11.49660 -11.17146 -11.06875 -10.78957 -10.68205 -10.27201 -10.17664 -9.27508 -8.30152 -6.36953 0.36684 1.36519 1.39668 1.41269 1.52606 2.16321 2.36464 2.64222 2.89653 3.04990 3.49396 3.58663 3.76056 3.90659 4.01346 4.09280 4.21538 4.25100 4.27282 4.30238 4.39091 4.39474 4.41304 4.51559 4.58135 4.65517 4.71242 4.72540 4.76119 4.83847 4.85655 4.95128 4.98782 5.00511 5.04450 5.08757 5.14067 5.18587 5.26016 5.26920 5.30432 5.33234 5.37283 5.39075 5.46540 5.51626 5.59031 5.96699 6.13439 6.16263 6.21119 6.40895 6.69303 6.78351 6.97524 7.27642 8.86171 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.002279 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.035587 B =12282.889766 C =13290.360500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.052 3.948 5 N -0.545 5.545 6 C 0.058 3.942 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.081 3.919 11 H 0.074 0.926 12 C 0.120 3.880 13 N -0.672 5.672 14 C 0.513 3.487 15 O -0.544 6.544 16 C 0.499 3.501 17 O -0.549 6.549 18 N -0.689 5.689 19 C 0.142 3.858 20 C -0.016 4.016 21 C -0.536 4.536 22 H 0.036 0.964 23 C 0.008 3.992 24 N -0.948 5.948 25 Si 0.953 3.047 26 H -0.266 1.266 27 H -0.285 1.285 28 H -0.241 1.241 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.421 0.579 49 H 0.417 0.583 50 H 0.058 0.942 51 H 0.058 0.942 52 H 0.035 0.965 53 H 0.034 0.966 54 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.188 -2.882 -34.411 35.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.075 4.075 5 N -0.270 5.270 6 C -0.069 4.069 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.028 4.028 11 H 0.091 0.909 12 C -0.003 4.003 13 N -0.326 5.326 14 C 0.292 3.708 15 O -0.423 6.423 16 C 0.279 3.721 17 O -0.427 6.427 18 N -0.341 5.341 19 C 0.020 3.980 20 C -0.054 4.054 21 C -0.574 4.574 22 H 0.054 0.946 23 C -0.190 4.190 24 N -0.588 5.588 25 Si 0.776 3.224 26 H -0.191 1.191 27 H -0.211 1.211 28 H -0.164 1.164 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.260 0.740 49 H 0.254 0.746 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.053 0.947 53 H 0.053 0.947 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.893 -2.621 -33.898 34.903 hybrid contribution 0.330 -0.644 0.368 0.812 sum 8.223 -3.265 -33.530 34.678 Atomic orbital electron populations 1.21760 0.95669 1.01836 1.01730 1.21470 0.96120 0.96492 1.01916 1.21535 0.94411 0.96683 1.02105 1.22205 0.95735 0.88581 1.01028 1.61856 1.15309 1.16907 1.32966 1.22130 1.01385 0.94652 0.88744 1.21601 0.96368 0.95488 1.02093 1.21549 0.96367 1.00731 0.96796 1.21666 1.01400 0.93560 0.98627 1.21874 0.89070 0.96955 0.94888 0.90855 1.21760 0.94525 0.98006 0.86027 1.45639 1.38729 1.42365 1.05827 1.19887 0.83767 0.82722 0.84375 1.90742 1.37008 1.32407 1.82099 1.20429 0.84437 0.82898 0.84297 1.90743 1.37377 1.32640 1.81951 1.45972 1.38667 1.42256 1.07194 1.21261 0.92934 0.97727 0.86123 1.19685 0.97183 0.97046 0.91512 1.21202 1.19568 1.23377 0.93286 0.94613 1.25994 0.98056 0.98862 0.96070 1.70057 1.40955 1.45277 1.02487 0.85624 0.78818 0.79248 0.78750 1.19053 1.21117 1.16437 0.92155 0.92381 0.93620 0.91215 0.92895 0.92967 0.91354 0.93817 0.91264 0.90324 0.94213 0.92228 0.90397 0.91342 0.91357 0.90405 0.92279 0.90773 0.89763 0.73994 0.74633 0.92337 0.92401 0.94655 0.94750 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -1.68 5.93 30.59 0.18 -1.50 16 3 C -0.11 -1.58 5.22 30.59 0.16 -1.42 16 4 C 0.05 0.69 4.74 86.30 0.41 1.10 16 5 N -0.54 -7.12 3.80 -871.11 -3.31 -10.43 16 6 C 0.06 0.62 5.30 86.33 0.46 1.08 16 7 C -0.12 -1.22 6.09 30.65 0.19 -1.03 16 8 C -0.12 -1.13 6.00 30.68 0.18 -0.95 16 9 C -0.11 -1.35 5.26 30.65 0.16 -1.19 16 10 C 0.08 0.96 2.11 44.94 0.09 1.05 16 11 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 12 C 0.12 1.89 4.56 86.38 0.39 2.28 16 13 N -0.67 -14.35 5.07 -464.42 -2.35 -16.71 16 14 C 0.51 14.26 7.89 87.27 0.69 14.94 16 15 O -0.54 -16.75 16.48 -3.24 -0.05 -16.81 16 16 C 0.50 16.47 7.89 87.27 0.69 17.16 16 17 O -0.55 -20.59 16.48 -3.25 -0.05 -20.64 16 18 N -0.69 -23.44 5.55 -464.40 -2.58 -26.02 16 19 C 0.14 5.77 5.61 86.38 0.48 6.26 16 20 C -0.02 -0.74 4.16 29.85 0.12 -0.62 16 21 C -0.54 -30.46 9.66 25.60 0.25 -30.21 16 22 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 23 C 0.01 0.44 5.47 84.65 0.46 0.90 16 24 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 25 Si 0.95 43.05 27.47 68.60 1.88 44.94 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 0.88 6.56 -2.39 -0.02 0.86 16 36 H 0.04 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.07 1.09 5.60 -2.38 -0.01 1.08 16 38 H 0.08 0.85 6.38 -2.38 -0.02 0.84 16 39 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.91 7.34 -2.39 -0.02 0.90 16 46 H 0.07 1.19 6.40 -2.39 -0.02 1.17 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.42 9.27 6.90 -92.70 -0.64 8.63 16 49 H 0.42 12.84 7.94 -92.71 -0.74 12.11 16 50 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 51 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 53 H 0.03 1.46 7.57 -2.39 -0.02 1.45 16 54 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -67.68 421.92 -1.07 -68.75 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.55 Total: 29.14 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.64 Total: 6.45 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -7.94 Total: -111.84 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.11 Total: -37.45 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Total: -67.68 -1.07 -68.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327968852.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.170 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds