Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46817 * 2 1 4 4 C 1.52997 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.34771 * 119.99904 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00508 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.53037 * 109.46147 * 180.02562 * 8 6 5 10 10 C 1.53191 * 109.31174 * 181.38655 * 9 8 6 11 11 N 1.46924 * 108.77327 * 305.36246 * 10 9 8 12 12 C 1.34777 * 120.62813 * 233.58228 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72946 * 12 11 10 15 15 H 1.08997 * 109.47478 * 40.27795 * 14 12 11 16 16 N 1.46905 * 109.47232 * 160.27974 * 14 12 11 17 17 C 1.53001 * 109.47277 * 280.27534 * 14 12 11 18 18 C 1.52996 * 109.47345 * 174.99661 * 17 14 12 19 19 C 1.50705 * 109.47087 * 179.97438 * 18 17 14 20 20 H 1.07992 * 120.00059 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99891 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99925 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46957 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46910 * 119.99663 * 23 21 19 26 26 H 1.48494 * 109.46885 * 240.00075 * 23 21 19 27 27 C 1.46921 * 118.73733 * 53.86655 * 11 10 9 28 28 C 1.53041 * 109.45837 * 300.06832 * 8 6 5 29 29 H 1.08997 * 109.47689 * 299.99737 * 1 2 3 30 30 H 1.08996 * 109.47379 * 60.00350 * 1 2 3 31 31 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47689 * 240.00263 * 2 1 3 33 33 H 1.09005 * 109.47155 * 119.99706 * 2 1 3 34 34 H 1.09004 * 109.47253 * 60.00189 * 3 2 1 35 35 H 1.08995 * 109.47287 * 300.00291 * 3 2 1 36 36 H 1.08997 * 109.47349 * 60.00285 * 4 3 2 37 37 H 1.09004 * 109.47241 * 300.00468 * 4 3 2 38 38 H 0.96999 * 119.99791 * 0.02562 * 5 4 3 39 39 H 1.08996 * 109.45768 * 60.03004 * 8 6 5 40 40 H 1.09008 * 109.50055 * 61.43075 * 9 8 6 41 41 H 1.08998 * 109.49860 * 301.33803 * 9 8 6 42 42 H 1.09006 * 109.58153 * 185.57630 * 10 9 8 43 43 H 1.08998 * 109.70267 * 65.22718 * 10 9 8 44 44 H 1.00898 * 110.99843 * 59.99824 * 16 14 12 45 45 H 1.00899 * 110.99818 * 183.95616 * 16 14 12 46 46 H 1.09000 * 109.47456 * 295.00621 * 17 14 12 47 47 H 1.09003 * 109.46674 * 54.99990 * 17 14 12 48 48 H 1.08994 * 109.47734 * 300.00421 * 18 17 14 49 49 H 1.09008 * 109.46545 * 60.00669 * 18 17 14 50 50 H 0.96995 * 120.00318 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.59076 * 65.92234 * 27 11 10 52 52 H 1.09000 * 109.58577 * 186.34777 * 27 11 10 53 53 H 1.08990 * 109.50248 * 298.56767 * 28 8 6 54 54 H 1.09008 * 109.49515 * 58.66352 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0013 6 6 5.3832 3.0702 0.0024 7 8 6.1714 2.1484 0.0025 8 6 5.8855 4.4911 0.0025 9 6 7.4159 4.4909 0.0032 10 6 7.9227 5.9361 0.0383 11 7 7.3199 6.6758 -1.0790 12 6 8.0933 7.3509 -1.9522 13 8 9.2989 7.3514 -1.8201 14 6 7.4604 8.0998 -3.0966 15 1 6.5534 8.5948 -2.7497 16 7 8.4032 9.1053 -3.6049 17 6 7.1092 7.1181 -4.2164 18 6 6.3551 7.8565 -5.3241 19 6 6.0097 6.8896 -6.4273 20 1 6.2987 5.8522 -6.3462 21 6 5.3247 7.3295 -7.5401 22 7 4.9732 8.5929 -7.6390 23 14 4.8959 6.1309 -8.9072 24 1 5.3994 4.7787 -8.5559 25 1 3.4215 6.0808 -9.0771 26 1 5.5254 6.5803 -10.1748 27 6 5.8578 6.6706 -1.2225 28 6 5.3749 5.2124 -1.2470 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.9336 0.9288 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 3.4278 3.5611 0.0016 39 1 5.5217 5.0048 0.8923 40 1 7.7801 3.9993 -0.8989 41 1 7.7792 3.9566 0.8811 42 1 9.0082 5.9451 -0.0608 43 1 7.6380 6.4026 0.9814 44 1 9.2528 8.6710 -3.9329 45 1 7.9794 9.6642 -4.3302 46 1 8.0245 6.6888 -4.6237 47 1 6.4807 6.3218 -3.8175 48 1 5.4397 8.2856 -4.9168 49 1 6.9837 8.6527 -5.7229 50 1 4.4909 8.9023 -8.4216 51 1 5.4060 7.1943 -0.3801 52 1 5.5803 7.1644 -2.1538 53 1 5.7586 4.7140 -2.1371 54 1 4.2851 5.1917 -1.2592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329260300.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -133.039387 kcal Electronic energy + Delta-G solvation = -30329.439963 eV Core-core repulsion = 26298.427346 eV Total energy + Delta-G solvation = -4031.012617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65909 -40.74020 -38.29027 -37.13239 -37.11233 -34.86575 -34.77418 -33.92342 -32.15902 -31.68449 -29.95130 -28.46165 -27.11306 -25.58614 -24.25882 -24.13428 -22.64971 -22.26297 -21.95842 -20.96314 -19.86292 -18.97738 -18.35285 -17.89832 -17.21285 -16.89888 -16.86335 -16.51920 -16.20203 -16.06823 -15.82199 -15.52628 -15.14033 -14.94034 -14.84116 -14.66828 -14.53268 -14.38261 -14.22413 -13.92705 -13.66536 -13.45784 -13.31945 -13.24282 -12.95290 -12.88773 -12.65397 -12.51614 -12.47140 -12.26613 -12.11252 -11.99056 -11.82795 -11.81855 -11.67279 -11.64952 -11.51123 -11.28257 -10.84660 -10.62574 -10.55573 -10.10702 -9.71361 -9.60060 -8.21503 -6.31066 1.37254 1.39914 1.50767 1.57170 1.61879 1.96175 2.20705 2.39470 3.12277 3.44359 3.62761 3.68089 3.75394 3.80692 3.87766 4.01534 4.04257 4.09342 4.17266 4.22800 4.29033 4.31352 4.41856 4.43733 4.62799 4.63824 4.64130 4.67232 4.74424 4.78574 4.83296 4.87767 4.92049 4.94263 4.97273 5.05669 5.07906 5.12275 5.25812 5.29310 5.35727 5.43895 5.47359 5.48604 5.57186 5.65991 5.81196 6.05867 6.21917 6.37470 6.47205 6.54779 6.83867 7.17097 7.24898 7.37897 8.89270 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007042 B = 0.003136 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.143387 B = 8925.262741 C =12219.722285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.122 4.122 4 C 0.117 3.883 5 N -0.717 5.717 6 C 0.515 3.485 7 O -0.588 6.588 8 C -0.095 4.095 9 C -0.107 4.107 10 C 0.114 3.886 11 N -0.609 5.609 12 C 0.524 3.476 13 O -0.576 6.576 14 C 0.081 3.919 15 H 0.114 0.886 16 N -0.830 5.830 17 C -0.121 4.121 18 C 0.034 3.966 19 C -0.542 4.542 20 H 0.050 0.950 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.954 3.046 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.281 1.281 27 C 0.099 3.901 28 C -0.122 4.122 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.417 0.583 39 H 0.139 0.861 40 H 0.040 0.960 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.342 0.658 45 H 0.353 0.647 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.008 0.992 49 H 0.001 0.999 50 H 0.264 0.736 51 H 0.112 0.888 52 H 0.089 0.911 53 H 0.047 0.953 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 -10.066 21.057 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.007 4.007 5 N -0.370 5.370 6 C 0.302 3.698 7 O -0.468 6.468 8 C -0.116 4.116 9 C -0.145 4.145 10 C -0.008 4.008 11 N -0.343 5.343 12 C 0.312 3.688 13 O -0.455 6.455 14 C -0.034 4.034 15 H 0.132 0.868 16 N -0.362 5.362 17 C -0.160 4.160 18 C -0.003 4.003 19 C -0.580 4.580 20 H 0.068 0.932 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.779 3.221 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.207 1.207 27 C -0.022 4.022 28 C -0.161 4.161 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.255 0.745 39 H 0.157 0.843 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.155 0.845 45 H 0.168 0.832 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.027 0.973 49 H 0.019 0.981 50 H 0.073 0.927 51 H 0.130 0.870 52 H 0.107 0.893 53 H 0.066 0.934 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.879 -10.314 21.771 25.675 hybrid contribution -0.276 -0.902 -2.207 2.400 sum -9.155 -11.216 19.565 24.339 Atomic orbital electron populations 1.21757 0.94882 1.02063 1.02215 1.21448 0.96617 0.95852 1.02287 1.21769 0.91969 0.98403 1.03811 1.21383 0.95398 0.82754 1.01153 1.45948 1.06752 1.09653 1.74626 1.21047 0.82454 0.91755 0.74530 1.90696 1.56708 1.48005 1.51431 1.21328 0.96374 0.91787 1.02146 1.21630 0.94335 0.95862 1.02721 1.21657 0.98901 0.90754 0.89446 1.48168 1.08047 1.50026 1.28025 1.20818 0.86634 0.78500 0.82820 1.90607 1.16133 1.63584 1.75213 1.21445 0.96359 0.92918 0.92632 0.86794 1.58779 1.08008 1.25216 1.44166 1.22159 0.99703 0.98370 0.95812 1.18941 0.94384 0.94779 0.92240 1.21593 1.36124 0.95860 1.04420 0.93215 1.25780 0.95749 0.96747 1.00636 1.70046 1.40265 1.15887 1.30162 0.85565 0.78178 0.79256 0.79058 1.19428 1.19958 1.20678 1.22187 0.78033 0.97086 1.04924 1.21998 1.02942 0.94943 0.96168 0.92037 0.92666 0.92465 0.92360 0.91574 0.89734 0.90687 0.93472 0.92287 0.74506 0.84305 0.94145 0.89569 0.91023 0.88192 0.84537 0.83201 0.94547 0.91575 0.97326 0.98059 0.92693 0.87003 0.89259 0.93446 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.12 -1.12 5.33 30.59 0.16 -0.95 16 4 C 0.12 1.73 5.67 86.38 0.49 2.22 16 5 N -0.72 -10.05 5.44 -463.05 -2.52 -12.57 16 6 C 0.51 10.58 7.16 87.66 0.63 11.20 16 7 O -0.59 -17.99 15.98 -3.05 -0.05 -18.03 16 8 C -0.10 -1.49 2.49 -11.51 -0.03 -1.52 16 9 C -0.11 -2.26 4.65 30.67 0.14 -2.12 16 10 C 0.11 2.46 6.43 86.36 0.56 3.02 16 11 N -0.61 -15.07 2.97 -818.07 -2.43 -17.50 16 12 C 0.52 17.41 6.95 87.66 0.61 18.02 16 13 O -0.58 -23.22 15.66 -3.04 -0.05 -23.26 16 14 C 0.08 2.72 2.35 44.17 0.10 2.83 16 15 H 0.11 3.40 6.79 -2.39 -0.02 3.39 16 16 N -0.83 -28.92 8.94 -171.79 -1.54 -30.46 16 17 C -0.12 -4.70 4.45 30.59 0.14 -4.56 16 18 C 0.03 1.61 4.74 29.85 0.14 1.75 16 19 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 20 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 21 C 0.01 0.53 5.46 84.66 0.46 0.99 16 22 N -0.92 -53.01 13.29 21.45 0.28 -52.72 16 23 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.10 1.77 5.78 86.51 0.50 2.27 16 28 C -0.12 -2.00 5.28 30.82 0.16 -1.83 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.42 3.02 7.87 -92.71 -0.73 2.29 16 39 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 1.14 8.13 -2.38 -0.02 1.12 16 41 H 0.09 1.73 8.07 -2.39 -0.02 1.71 16 42 H 0.07 1.91 7.01 -2.38 -0.02 1.90 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.34 12.39 8.58 -89.70 -0.77 11.62 16 45 H 0.35 12.27 7.55 -89.69 -0.68 11.59 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 2.44 6.98 -2.39 -0.02 2.42 16 48 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.00 0.06 6.87 -2.38 -0.02 0.04 16 50 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 51 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 52 H 0.09 1.87 4.85 -2.39 -0.01 1.86 16 53 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.11 1.13 7.53 -2.38 -0.02 1.11 16 Total: -1.00 -75.15 423.21 -0.35 -75.49 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -1.27 Total: 33.49 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.19 Total: 0.54 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -6.20 Total: -113.25 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.10 Total: -41.30 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.15 -0.35 -75.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329260300.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.545 kcal (2) G-P(sol) polarization free energy of solvation -75.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds