Wall clock time and date at job start Sat Apr 11 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.46841 * 174.99605 * 6 4 2 8 8 N 1.46496 * 109.46693 * 180.02562 * 7 6 4 9 9 C 1.46500 * 120.00128 * 90.00603 * 8 7 6 10 10 C 1.34787 * 120.00176 * 270.00248 * 8 7 6 11 11 O 1.21276 * 119.99570 * 359.97438 * 10 8 7 12 12 C 1.50694 * 120.00166 * 180.02562 * 10 8 7 13 13 C 1.53003 * 109.47328 * 179.97438 * 12 10 8 14 14 N 1.46500 * 109.47236 * 179.97438 * 13 12 10 15 15 C 1.46756 * 124.34691 * 269.72610 * 14 13 12 16 16 C 1.54657 * 105.38313 * 162.85746 * 15 14 13 17 17 C 1.54625 * 101.68492 * 25.76329 * 16 15 14 18 18 C 1.34419 * 124.34772 * 90.02156 * 14 13 12 19 19 O 1.21275 * 124.94330 * 0.43097 * 18 14 13 20 20 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 30 30 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 31 31 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 33 33 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 35 35 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 36 36 H 1.08996 * 109.47554 * 295.00148 * 6 4 2 37 37 H 1.09001 * 109.46960 * 55.00369 * 6 4 2 38 38 H 1.08991 * 109.47526 * 300.00096 * 7 6 4 39 39 H 1.09001 * 109.46720 * 60.00616 * 7 6 4 40 40 H 1.09004 * 109.47120 * 89.99815 * 9 8 7 41 41 H 1.09005 * 109.47189 * 209.99622 * 9 8 7 42 42 H 1.08997 * 109.47353 * 329.99518 * 9 8 7 43 43 H 1.09005 * 109.47307 * 300.00249 * 12 10 8 44 44 H 1.09002 * 109.47061 * 59.99472 * 12 10 8 45 45 H 1.09004 * 109.46577 * 299.99863 * 13 12 10 46 46 H 1.09000 * 109.46825 * 59.99365 * 13 12 10 47 47 H 1.09001 * 110.24659 * 281.98203 * 15 14 13 48 48 H 1.09004 * 110.25206 * 43.98149 * 15 14 13 49 49 H 1.09008 * 111.19157 * 267.59119 * 16 15 14 50 50 H 1.09005 * 110.82508 * 143.77634 * 16 15 14 51 51 H 1.09000 * 110.48899 * 216.31440 * 17 16 15 52 52 H 1.08998 * 110.60100 * 93.72455 * 17 16 15 53 53 H 0.97004 * 119.99747 * 95.00774 * 20 4 2 54 54 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 6 4.0801 -1.3314 2.5562 8 7 5.5451 -1.3314 2.5561 9 6 6.2776 -0.1815 3.0923 10 6 6.2191 -2.3892 2.0627 11 8 5.6126 -3.3413 1.6193 12 6 7.7260 -2.3894 2.0631 13 6 8.2361 -3.6969 1.4539 14 7 9.7011 -3.6968 1.4537 15 6 10.5289 -3.1903 0.3528 16 6 11.9369 -2.9854 0.9590 17 6 11.9259 -3.9994 2.1263 18 6 10.4596 -4.1658 2.4594 19 8 10.0309 -4.6521 3.4844 20 7 1.5517 -2.1025 1.2491 21 6 0.3102 -2.3897 1.7504 22 1 -0.3092 -1.5980 2.1454 23 6 -0.1524 -3.6985 1.7509 24 7 0.6002 -4.6626 1.2645 25 14 -1.8463 -4.0903 2.4340 26 1 -2.1036 -5.5479 2.3138 27 1 -1.9075 -3.6930 3.8636 28 1 -2.8744 -3.3413 1.6677 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9330 -1.3114 0.4070 37 1 3.9337 0.3018 1.1591 38 1 3.7172 -0.7418 3.3980 39 1 3.7165 -2.3551 2.6459 40 1 6.4593 -0.3308 4.1567 41 1 7.2300 -0.0825 2.5715 42 1 5.6886 0.7241 2.9477 43 1 8.0896 -1.5474 1.4740 44 1 8.0891 -2.3000 3.0870 45 1 7.8725 -4.5386 2.0435 46 1 7.8729 -3.7867 0.4301 47 1 10.5664 -3.9189 -0.4570 48 1 10.1341 -2.2415 -0.0105 49 1 12.0628 -1.9673 1.3278 50 1 12.7112 -3.2343 0.2333 51 1 12.4688 -3.6006 2.9832 52 1 12.3562 -4.9504 1.8123 53 1 2.1078 -2.8135 0.8941 54 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329764490.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:58 Heat of formation + Delta-G solvation = -92.925520 kcal Electronic energy + Delta-G solvation = -30509.399335 eV Core-core repulsion = 26480.126186 eV Total energy + Delta-G solvation = -4029.273150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53895 -40.89135 -39.04776 -37.54019 -36.76214 -35.24697 -34.88251 -33.06417 -31.54792 -30.61009 -28.45826 -28.15540 -27.49570 -26.85414 -25.41869 -24.44417 -22.76121 -22.61645 -20.81141 -20.41859 -20.11658 -19.38596 -18.42578 -17.67747 -17.17109 -17.13597 -17.07931 -16.51025 -16.25791 -16.13366 -15.50679 -15.30049 -15.22106 -14.89373 -14.70654 -14.60548 -14.25624 -14.11862 -14.02704 -13.80828 -13.65939 -13.42842 -13.27780 -13.13311 -12.94420 -12.88061 -12.78243 -12.68638 -12.54275 -12.37270 -12.18400 -11.96826 -11.85531 -11.82687 -11.78889 -11.52328 -11.44828 -11.14591 -10.97925 -10.86932 -10.78241 -9.81500 -9.71321 -9.00009 -8.28524 -5.20877 1.48465 1.54716 1.54876 1.65677 1.76804 1.80878 2.18883 2.74538 3.41362 3.47412 3.53614 3.64952 3.75941 3.79669 3.89357 3.92385 4.08383 4.09584 4.17257 4.22727 4.25165 4.34302 4.39730 4.44433 4.56046 4.58378 4.65284 4.66928 4.67876 4.71828 4.74357 4.83596 4.88291 4.89757 4.90514 4.97393 5.07504 5.12624 5.12894 5.19015 5.25014 5.29105 5.36823 5.48642 5.51692 5.60275 5.67372 5.74735 6.11921 6.35212 6.55083 7.07882 7.13781 7.17779 8.07768 8.23328 9.22335 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.002451 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.334848 B =11419.269729 C =12658.126264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.184 3.816 5 H 0.046 0.954 6 C -0.117 4.117 7 C 0.126 3.874 8 N -0.614 5.614 9 C 0.070 3.930 10 C 0.500 3.500 11 O -0.588 6.588 12 C -0.133 4.133 13 C 0.141 3.859 14 N -0.618 5.618 15 C 0.089 3.911 16 C -0.116 4.116 17 C -0.148 4.148 18 C 0.496 3.504 19 O -0.593 6.593 20 N -0.744 5.744 21 C -0.299 4.299 22 H 0.071 0.929 23 C -0.117 4.117 24 N -0.984 5.984 25 Si 1.120 2.880 26 H -0.300 1.300 27 H -0.279 1.279 28 H -0.276 1.276 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.098 0.902 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.118 0.882 51 H 0.111 0.889 52 H 0.115 0.885 53 H 0.353 0.647 54 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.204 16.372 -2.261 30.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.076 3.924 5 H 0.064 0.936 6 C -0.156 4.156 7 C 0.003 3.997 8 N -0.346 5.346 9 C -0.071 4.071 10 C 0.289 3.711 11 O -0.468 6.468 12 C -0.173 4.173 13 C 0.018 3.982 14 N -0.350 5.350 15 C -0.032 4.032 16 C -0.153 4.153 17 C -0.188 4.188 18 C 0.286 3.714 19 O -0.474 6.474 20 N -0.385 5.385 21 C -0.431 4.431 22 H 0.089 0.911 23 C -0.307 4.307 24 N -0.634 5.634 25 Si 0.947 3.053 26 H -0.227 1.227 27 H -0.205 1.205 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.137 0.863 51 H 0.129 0.871 52 H 0.133 0.867 53 H 0.184 0.816 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 24.364 14.642 -1.569 28.468 hybrid contribution 0.562 0.121 -0.322 0.659 sum 24.926 14.763 -1.890 29.032 Atomic orbital electron populations 1.21732 0.96087 1.01311 1.00090 1.21653 0.95948 0.96879 0.98444 1.21811 1.01240 0.94109 1.02031 1.20417 0.91657 0.84590 0.95756 0.93590 1.22058 0.95327 1.01629 0.96610 1.21262 0.79024 1.01023 0.98427 1.48058 1.06550 1.19062 1.60931 1.22139 0.98008 0.87472 0.99513 1.21239 0.91199 0.81737 0.76903 1.90787 1.71631 1.36250 1.48171 1.21911 0.89539 1.01153 1.04731 1.20879 0.78593 0.96531 1.02200 1.48511 1.05434 1.61320 1.19780 1.22533 0.90971 1.01048 0.88618 1.22682 0.95883 0.99930 0.96819 1.22387 0.90676 1.03535 1.02211 1.21987 0.91655 0.75763 0.81958 1.90717 1.80190 1.47362 1.29124 1.42722 1.17217 1.04170 1.74359 1.20254 0.94191 0.94747 1.33863 0.91102 1.27022 1.08700 0.92184 1.02801 1.70963 1.11451 1.34364 1.46599 0.82718 0.71512 0.75110 0.76002 1.22701 1.20504 1.20236 0.93556 0.93088 0.93981 0.94274 0.91469 0.92330 0.92160 0.94513 0.88030 0.89430 0.94351 0.91822 0.88408 0.89004 0.84784 0.88350 0.93361 0.89221 0.89982 0.88231 0.88424 0.86341 0.87103 0.86657 0.81610 0.95038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.26 71.98 0.59 -4.48 16 2 C -0.11 -3.77 2.69 -10.80 -0.03 -3.80 16 3 C -0.13 -3.30 8.85 71.98 0.64 -2.67 16 4 C 0.18 7.21 2.02 44.99 0.09 7.30 16 5 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 6 C -0.12 -3.83 4.86 30.60 0.15 -3.68 16 7 C 0.13 4.27 5.29 86.38 0.46 4.73 16 8 N -0.61 -16.50 2.87 -846.75 -2.43 -18.93 16 9 C 0.07 1.02 10.24 127.77 1.31 2.33 16 10 C 0.50 15.62 7.67 87.65 0.67 16.30 16 11 O -0.59 -25.77 15.56 -3.02 -0.05 -25.82 16 12 C -0.13 -2.76 4.58 29.85 0.14 -2.63 16 13 C 0.14 3.45 5.22 86.38 0.45 3.90 16 14 N -0.62 -11.28 2.93 -817.63 -2.40 -13.68 16 15 C 0.09 0.70 7.35 86.90 0.64 1.34 16 16 C -0.12 -0.37 7.19 31.71 0.23 -0.14 16 17 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 18 C 0.50 10.98 8.02 87.90 0.71 11.69 16 19 O -0.59 -20.10 17.59 -3.01 -0.05 -20.15 16 20 N -0.74 -38.47 4.45 -322.94 -1.44 -39.91 16 21 C -0.30 -16.91 7.57 84.03 0.64 -16.28 16 22 H 0.07 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.12 -7.10 5.50 84.86 0.47 -6.64 16 24 N -0.98 -66.32 13.70 21.65 0.30 -66.02 16 25 Si 1.12 54.89 29.92 68.60 2.05 56.94 16 26 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 29 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.95 6.01 -2.39 -0.01 1.94 16 32 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.07 1.41 6.32 -2.39 -0.02 1.40 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 2.48 6.18 -2.39 -0.01 2.46 16 38 H 0.09 2.63 8.07 -2.39 -0.02 2.61 16 39 H 0.04 1.77 7.03 -2.39 -0.02 1.75 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.10 0.86 6.44 -2.38 -0.02 0.84 16 42 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 43 H 0.13 1.66 7.40 -2.38 -0.02 1.64 16 44 H 0.10 2.02 8.11 -2.39 -0.02 2.00 16 45 H 0.05 1.60 7.88 -2.39 -0.02 1.58 16 46 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 49 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 50 H 0.12 -0.17 8.14 -2.38 -0.02 -0.19 16 51 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.35 20.45 6.63 -92.71 -0.61 19.83 16 54 H 0.24 16.50 6.77 -92.71 -0.63 15.87 16 Total: -1.00 -90.70 424.86 3.73 -86.97 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.39 Total: 34.62 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 7.35 Total: 5.98 kcal Atomic # 7 Polarization: -132.57 SS G_CDS: -5.97 Total: -138.54 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.10 Total: -45.97 kcal Atomic # 14 Polarization: 54.89 SS G_CDS: 2.05 Total: 56.94 kcal Total: -90.70 3.73 -86.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329764490.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.953 kcal (2) G-P(sol) polarization free energy of solvation -90.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds