Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47115 * 2 1 4 4 C 1.53000 * 109.46817 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.47021 * 179.97438 * 4 3 2 6 6 C 1.46899 * 110.99621 * 293.95584 * 5 4 3 7 7 C 1.46897 * 111.00275 * 170.00126 * 5 4 3 8 8 C 1.53003 * 109.47013 * 190.00079 * 7 5 4 9 9 N 1.46498 * 109.46642 * 179.97438 * 8 7 5 10 10 C 1.34779 * 119.99706 * 179.97438 * 9 8 7 11 11 O 1.21349 * 119.99798 * 359.97438 * 10 9 8 12 12 C 1.49456 * 119.99979 * 179.97438 * 10 9 8 13 13 O 1.21350 * 120.00090 * 6.39573 * 12 10 9 14 14 N 1.34774 * 119.99976 * 186.39492 * 12 10 9 15 15 C 1.46937 * 120.62989 * 7.07948 * 14 12 10 16 16 C 1.53191 * 108.77242 * 233.58768 * 15 14 12 17 17 C 1.53039 * 109.31146 * 305.36074 * 16 15 14 18 18 C 1.53043 * 109.53675 * 61.36870 * 17 16 15 19 19 H 1.09001 * 109.49321 * 58.58837 * 18 17 16 20 20 C 1.50702 * 109.49490 * 178.67899 * 18 17 16 21 21 H 1.07991 * 120.00243 * 34.62293 * 20 18 17 22 22 C 1.37879 * 119.99505 * 214.61671 * 20 18 17 23 23 N 1.31519 * 119.99866 * 175.11525 * 22 20 18 24 24 Si 1.86795 * 120.00495 * 355.11664 * 22 20 18 25 25 H 1.48501 * 109.47442 * 95.26043 * 24 22 20 26 26 H 1.48505 * 109.47240 * 215.26461 * 24 22 20 27 27 H 1.48503 * 109.46960 * 335.25801 * 24 22 20 28 28 C 1.46928 * 120.63146 * 186.79931 * 14 12 10 29 29 H 1.09007 * 109.47054 * 60.00450 * 1 2 3 30 30 H 1.09005 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47151 * 300.00430 * 1 2 3 32 32 H 1.09002 * 109.47233 * 239.99736 * 2 1 3 33 33 H 1.09002 * 109.47401 * 119.99870 * 2 1 3 34 34 H 1.08993 * 109.47462 * 59.99760 * 3 2 1 35 35 H 1.08996 * 109.47104 * 299.99311 * 3 2 1 36 36 H 1.09000 * 109.47726 * 60.00105 * 4 3 2 37 37 H 1.08993 * 109.47576 * 299.99581 * 4 3 2 38 38 H 1.09006 * 109.47299 * 296.04240 * 6 5 4 39 39 H 1.08995 * 109.47584 * 56.04490 * 6 5 4 40 40 H 1.09004 * 109.47139 * 176.04398 * 6 5 4 41 41 H 1.08997 * 109.47084 * 69.99387 * 7 5 4 42 42 H 1.08998 * 109.46670 * 309.99953 * 7 5 4 43 43 H 1.08994 * 109.47046 * 59.99879 * 8 7 5 44 44 H 1.08999 * 109.46832 * 299.99738 * 8 7 5 45 45 H 0.96996 * 120.00243 * 359.97438 * 9 8 7 46 46 H 1.08998 * 109.58140 * 353.37176 * 15 14 12 47 47 H 1.08995 * 109.58214 * 113.65536 * 15 14 12 48 48 H 1.08992 * 109.50297 * 65.31524 * 16 15 14 49 49 H 1.09000 * 109.49480 * 185.41307 * 16 15 14 50 50 H 1.09008 * 109.46079 * 181.38763 * 17 16 15 51 51 H 1.09002 * 109.46362 * 301.36235 * 17 16 15 52 52 H 0.96995 * 120.00374 * 180.02562 * 23 22 20 53 53 H 1.08996 * 109.58468 * 246.20248 * 28 14 12 54 54 H 1.08997 * 109.58102 * 6.62866 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7107 3.5086 -1.2538 7 6 5.5084 2.8738 0.2387 8 6 5.9397 4.3220 0.4790 9 7 7.3843 4.3680 0.7176 10 6 7.9910 5.5481 0.9541 11 8 7.3406 6.5724 0.9689 12 6 9.4647 5.5950 1.1981 13 8 10.1334 4.5906 1.0693 14 7 10.0511 6.7529 1.5613 15 6 9.2396 7.9379 1.8716 16 6 9.7329 9.1105 1.0181 17 6 11.2349 9.3016 1.2403 18 6 11.9816 8.0389 0.8039 19 1 11.7723 7.8374 -0.2466 20 6 13.4631 8.2401 0.9928 21 1 13.8267 8.8297 1.8213 22 6 14.3543 7.6713 0.1078 23 7 15.6403 7.9250 0.2153 24 14 13.7353 6.5404 -1.2440 25 1 13.5466 7.3199 -2.4938 26 1 14.7274 5.4606 -1.4790 27 1 12.4398 5.9415 -0.8337 28 6 11.5137 6.8525 1.6604 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9338 0.9285 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 4.2178 3.0202 -2.0860 39 1 2.6326 3.4595 -1.4062 40 1 4.0228 4.5516 -1.1998 41 1 6.0328 2.4780 -0.6310 42 1 5.7517 2.2722 1.1145 43 1 5.4153 4.7177 1.3487 44 1 5.6963 4.9236 -0.3968 45 1 7.9042 3.5492 0.7055 46 1 8.1935 7.7343 1.6432 47 1 9.3417 8.1840 2.9285 48 1 9.5448 8.8988 -0.0344 49 1 9.2039 10.0186 1.3072 50 1 11.5838 10.1510 0.6529 51 1 11.4249 9.4885 2.2972 52 1 16.2673 7.5252 -0.4075 53 1 11.7993 7.0135 2.6998 54 1 11.9682 5.9327 1.2925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330412647.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -87.783414 kcal Electronic energy + Delta-G solvation = -29810.773832 eV Core-core repulsion = 25781.723661 eV Total energy + Delta-G solvation = -4029.050171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.04869 -40.03439 -39.08100 -38.64034 -36.54800 -35.35986 -34.96664 -33.56644 -32.17443 -31.10852 -29.32417 -27.88668 -27.10959 -26.67443 -24.56673 -23.43906 -23.24836 -22.24654 -21.70650 -21.48539 -20.48915 -19.20159 -18.53670 -18.12718 -17.35014 -17.17510 -16.78328 -16.45422 -16.34433 -16.14262 -15.70643 -15.56492 -15.47297 -15.19239 -14.99983 -14.74584 -14.60345 -14.48295 -14.15988 -14.02721 -13.74452 -13.62910 -13.21940 -13.17111 -13.06310 -13.02377 -12.65959 -12.60412 -12.36559 -12.28373 -12.10187 -12.04449 -11.85669 -11.72920 -11.68266 -11.61435 -11.34339 -11.27009 -11.15378 -10.80534 -10.39244 -10.05872 -9.69605 -9.38605 -8.35706 -6.38452 0.26578 1.21287 1.26138 1.32186 1.43241 2.06256 2.27962 2.38475 2.95366 3.02278 3.27957 3.74417 3.93491 4.02002 4.04901 4.10177 4.15504 4.23068 4.25873 4.38504 4.39805 4.45058 4.48928 4.53523 4.59542 4.65016 4.71291 4.73038 4.74584 4.82178 4.86508 4.89277 4.95060 4.95862 5.00483 5.07461 5.08183 5.12713 5.20219 5.28302 5.30251 5.40472 5.43165 5.49583 5.55406 5.60047 5.65082 5.93198 5.99402 6.04601 6.25010 6.31742 6.64728 6.71923 6.87404 7.27929 8.80613 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.001935 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.511032 B =14467.159848 C =15158.774619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.112 4.112 4 C 0.055 3.945 5 N -0.546 5.546 6 C 0.014 3.986 7 C 0.048 3.952 8 C 0.123 3.877 9 N -0.686 5.686 10 C 0.521 3.479 11 O -0.516 6.516 12 C 0.490 3.510 13 O -0.560 6.560 14 N -0.575 5.575 15 C 0.050 3.950 16 C -0.123 4.123 17 C -0.103 4.103 18 C 0.007 3.993 19 H 0.024 0.976 20 C -0.511 4.511 21 H 0.044 0.956 22 C 0.024 3.976 23 N -0.940 5.940 24 Si 0.930 3.070 25 H -0.269 1.269 26 H -0.285 1.285 27 H -0.257 1.257 28 C 0.117 3.883 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.028 0.972 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.419 0.581 46 H 0.158 0.842 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.099 0.901 50 H 0.054 0.946 51 H 0.057 0.943 52 H 0.267 0.733 53 H 0.069 0.931 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.544 -13.312 -0.869 34.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.150 4.150 4 C -0.072 4.072 5 N -0.271 5.271 6 C -0.134 4.134 7 C -0.080 4.080 8 C 0.001 3.999 9 N -0.338 5.338 10 C 0.302 3.698 11 O -0.395 6.395 12 C 0.272 3.728 13 O -0.440 6.440 14 N -0.306 5.306 15 C -0.069 4.069 16 C -0.161 4.161 17 C -0.141 4.141 18 C -0.013 4.013 19 H 0.042 0.958 20 C -0.549 4.549 21 H 0.063 0.937 22 C -0.175 4.175 23 N -0.579 5.579 24 Si 0.755 3.245 25 H -0.194 1.194 26 H -0.211 1.211 27 H -0.182 1.182 28 C -0.005 4.005 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.256 0.744 46 H 0.174 0.826 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.117 0.883 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.076 0.924 53 H 0.087 0.913 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -31.732 -12.901 -0.615 34.260 hybrid contribution 1.542 -1.136 -1.266 2.296 sum -30.189 -14.037 -1.882 33.346 Atomic orbital electron populations 1.21763 0.95489 1.01873 1.01879 1.21480 0.96217 0.96211 1.02158 1.21584 0.93780 0.97081 1.02524 1.22204 0.96170 0.87591 1.01254 1.61870 1.12371 1.17133 1.35688 1.22578 1.02314 0.99326 0.89173 1.22197 0.88542 0.95039 1.02246 1.21497 0.77534 0.98170 1.02742 1.45675 1.10307 1.08873 1.68971 1.19852 0.87351 0.84640 0.77937 1.90304 1.65670 1.32258 1.51229 1.20454 0.89218 0.83920 0.79184 1.90714 1.65862 1.34367 1.53028 1.48453 1.08217 1.11191 1.62778 1.23362 1.00092 0.83607 0.99881 1.21867 0.95594 0.98821 0.99784 1.21510 0.94364 0.97324 1.00870 1.19507 0.93988 0.92928 0.94871 0.95784 1.21171 0.90293 1.31499 1.11979 0.93749 1.25783 0.94827 0.97208 0.99646 1.70019 1.03109 1.45555 1.39242 0.85995 0.78878 0.79457 0.80155 1.19437 1.21137 1.18166 1.22296 0.76967 1.00306 1.00937 0.92757 0.92407 0.92720 0.92026 0.91777 0.91645 0.91857 0.94594 0.90262 0.95359 0.90102 0.91144 0.93471 0.88877 0.89993 0.90905 0.74413 0.82606 0.90627 0.92901 0.88258 0.92770 0.92432 0.92402 0.91258 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.12 -0.97 5.93 30.59 0.18 -0.79 16 3 C -0.11 -1.02 5.15 30.60 0.16 -0.86 16 4 C 0.06 0.56 4.96 86.30 0.43 0.99 16 5 N -0.55 -6.68 4.76 -922.45 -4.39 -11.07 16 6 C 0.01 0.16 9.12 127.69 1.17 1.32 16 7 C 0.05 0.59 5.07 86.30 0.44 1.03 16 8 C 0.12 1.98 5.60 86.38 0.48 2.47 16 9 N -0.69 -14.23 5.55 -464.41 -2.58 -16.81 16 10 C 0.52 14.59 7.78 87.27 0.68 15.27 16 11 O -0.52 -15.00 13.10 -3.24 -0.04 -15.05 16 12 C 0.49 17.35 7.74 87.27 0.68 18.02 16 13 O -0.56 -22.58 15.94 -3.25 -0.05 -22.63 16 14 N -0.58 -21.14 2.97 -819.64 -2.43 -23.58 16 15 C 0.05 1.52 6.27 86.36 0.54 2.06 16 16 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 17 C -0.10 -3.94 5.15 30.62 0.16 -3.78 16 18 C 0.01 0.31 1.79 -11.32 -0.02 0.29 16 19 H 0.02 1.16 5.61 -2.39 -0.01 1.15 16 20 C -0.51 -28.71 8.86 25.60 0.23 -28.49 16 21 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 22 C 0.02 1.39 5.47 84.65 0.46 1.85 16 23 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 24 Si 0.93 46.13 26.63 68.60 1.83 47.95 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.26 -12.68 5.97 99.48 0.59 -12.08 16 28 C 0.12 5.09 5.52 86.51 0.48 5.56 16 29 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.58 6.47 -2.39 -0.02 0.56 16 36 H 0.04 0.36 8.12 -2.39 -0.02 0.34 16 37 H 0.08 0.75 7.93 -2.39 -0.02 0.73 16 38 H 0.03 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.08 0.78 6.30 -2.39 -0.02 0.77 16 40 H 0.07 0.84 6.47 -2.38 -0.02 0.82 16 41 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 42 H 0.09 0.99 7.93 -2.39 -0.02 0.97 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.24 6.55 -2.39 -0.02 1.22 16 45 H 0.42 7.91 7.96 -92.71 -0.74 7.17 16 46 H 0.16 4.49 3.78 -78.84 -0.30 4.20 16 47 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 51 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 53 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 54 H 0.06 2.83 5.94 -2.39 -0.01 2.81 16 Total: -1.00 -68.66 415.03 -0.68 -69.33 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.26 Total: 19.01 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.95 Total: 10.95 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -9.10 Total: -109.56 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.09 Total: -37.68 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.83 Total: 47.95 kcal Total: -68.66 -0.68 -69.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330412647.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.453 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds