Wall clock time and date at job start Sat Apr 11 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 C 1.53009 * 109.47103 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.46904 * 111.00046 * 293.94987 * 5 4 3 7 7 C 1.46900 * 110.99764 * 169.99950 * 5 4 3 8 8 C 1.52998 * 109.47217 * 189.99886 * 7 5 4 9 9 N 1.46502 * 109.47360 * 180.02562 * 8 7 5 10 10 C 1.34772 * 120.00197 * 180.02562 * 9 8 7 11 11 O 1.21356 * 119.99888 * 359.97438 * 10 9 8 12 12 C 1.49451 * 120.00460 * 179.97438 * 10 9 8 13 13 O 1.21356 * 119.99494 * 353.38309 * 12 10 9 14 14 N 1.34776 * 120.00381 * 173.38729 * 12 10 9 15 15 C 1.46926 * 120.62820 * 353.06567 * 14 12 10 16 16 C 1.53196 * 108.76922 * 126.41895 * 15 14 12 17 17 C 1.53036 * 109.34112 * 54.62209 * 16 15 14 18 18 C 1.53043 * 109.53413 * 298.67856 * 17 16 15 19 19 H 1.09001 * 109.50042 * 301.34757 * 18 17 16 20 20 C 1.50704 * 109.49240 * 181.28640 * 18 17 16 21 21 H 1.07995 * 120.00346 * 0.06542 * 20 18 17 22 22 C 1.37886 * 119.99595 * 180.34521 * 20 18 17 23 23 N 1.31514 * 119.99864 * 179.72759 * 22 20 18 24 24 Si 1.86795 * 120.00150 * 359.71814 * 22 20 18 25 25 H 1.48501 * 109.46845 * 90.00540 * 24 22 20 26 26 H 1.48503 * 109.47375 * 210.00216 * 24 22 20 27 27 H 1.48504 * 109.47401 * 330.00581 * 24 22 20 28 28 C 1.46931 * 120.62929 * 173.09499 * 14 12 10 29 29 H 1.08995 * 109.47838 * 60.00160 * 1 2 3 30 30 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47278 * 299.99568 * 1 2 3 32 32 H 1.09000 * 109.47278 * 240.00432 * 2 1 3 33 33 H 1.08995 * 109.47838 * 119.99840 * 2 1 3 34 34 H 1.08992 * 109.47538 * 60.00537 * 3 2 1 35 35 H 1.08999 * 109.47274 * 299.99735 * 3 2 1 36 36 H 1.09001 * 109.46661 * 60.00071 * 4 3 2 37 37 H 1.08991 * 109.46871 * 300.00097 * 4 3 2 38 38 H 1.08993 * 109.47104 * 296.04790 * 6 5 4 39 39 H 1.09001 * 109.46667 * 56.05276 * 6 5 4 40 40 H 1.09003 * 109.47026 * 176.04690 * 6 5 4 41 41 H 1.09004 * 109.47300 * 70.00055 * 7 5 4 42 42 H 1.08999 * 109.47400 * 310.00086 * 7 5 4 43 43 H 1.09007 * 109.47352 * 59.99942 * 8 7 5 44 44 H 1.09007 * 109.46942 * 300.00085 * 8 7 5 45 45 H 0.97001 * 119.99571 * 359.97438 * 9 8 7 46 46 H 1.09002 * 109.58673 * 246.20018 * 15 14 12 47 47 H 1.08996 * 109.58887 * 6.49406 * 15 14 12 48 48 H 1.09005 * 109.49633 * 174.58725 * 16 15 14 49 49 H 1.09002 * 109.49831 * 294.68233 * 16 15 14 50 50 H 1.09003 * 109.48723 * 178.64696 * 17 16 15 51 51 H 1.08994 * 109.43652 * 58.68064 * 17 16 15 52 52 H 0.97002 * 120.00070 * 179.97438 * 23 22 20 53 53 H 1.09000 * 109.58264 * 113.79778 * 28 14 12 54 54 H 1.08999 * 109.70240 * 353.44052 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0595 2.8276 -0.0013 6 6 3.7096 3.5091 -1.2547 7 6 5.5085 2.8739 0.2363 8 6 5.9399 4.3219 0.4766 9 7 7.3850 4.3682 0.7129 10 6 7.9917 5.5480 0.9500 11 8 7.3410 6.5722 0.9673 12 6 9.4658 5.5952 1.1916 13 8 10.0971 4.5638 1.2938 14 7 10.0939 6.7830 1.2960 15 6 9.3758 8.0359 1.0253 16 6 9.5406 8.9686 2.2293 17 6 11.0301 9.1503 2.5297 18 6 11.6507 7.7956 2.8788 19 1 11.1361 7.3710 3.7408 20 6 13.1103 7.9802 3.2051 21 1 13.5515 8.9653 3.1684 22 6 13.8839 6.8906 3.5449 23 7 15.1590 7.0509 3.8245 24 14 13.1209 5.1868 3.6085 25 1 13.2388 4.5417 2.2761 26 1 13.8301 4.3641 4.6212 27 1 11.6872 5.2999 3.9786 28 6 11.5100 6.8496 1.6822 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9329 0.9289 -0.8909 37 1 3.9336 0.9287 0.8890 38 1 4.2160 3.0210 -2.0873 39 1 2.6312 3.4600 -1.4061 40 1 4.0217 4.5521 -1.2006 41 1 6.0322 2.4784 -0.6341 42 1 5.7526 2.2720 1.1116 43 1 5.4162 4.7175 1.3470 44 1 5.6958 4.9238 -0.3988 45 1 7.9050 3.5494 0.6994 46 1 9.7911 8.5103 0.1361 47 1 8.3185 7.8241 0.8665 48 1 9.0943 9.9371 2.0031 49 1 9.0453 8.5332 3.0973 50 1 11.1509 9.8326 3.3711 51 1 11.5292 9.5631 1.6530 52 1 15.7031 6.2844 4.0639 53 1 12.0992 7.2272 0.8465 54 1 11.8627 5.8559 1.9585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330412648.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:15 Heat of formation + Delta-G solvation = -81.432666 kcal Electronic energy + Delta-G solvation = -29957.704282 eV Core-core repulsion = 25928.929500 eV Total energy + Delta-G solvation = -4028.774782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.10848 -40.10266 -39.09468 -38.71888 -36.57355 -35.40039 -34.99877 -33.63845 -32.27209 -31.12163 -29.32902 -27.90033 -27.08219 -26.75901 -24.61017 -23.62529 -23.26240 -22.25863 -21.72033 -21.51198 -20.53954 -19.08469 -18.61377 -18.27690 -17.44154 -17.22299 -16.74679 -16.53983 -16.37251 -16.15033 -15.85507 -15.61399 -15.46788 -15.25617 -14.97644 -14.86448 -14.67736 -14.57643 -14.18905 -14.04970 -13.71488 -13.65336 -13.30830 -13.21819 -13.04190 -13.03469 -12.65779 -12.54610 -12.34713 -12.31372 -12.13263 -12.10776 -11.86385 -11.76543 -11.66444 -11.62680 -11.35446 -11.33466 -11.09504 -10.82042 -10.41187 -10.10454 -9.75431 -9.38089 -8.39581 -6.42359 0.22040 1.16673 1.22917 1.29443 1.37035 2.01573 2.19900 2.34805 2.93315 2.97203 3.24643 3.73488 3.92736 3.95878 4.01408 4.09651 4.13023 4.16414 4.25247 4.37744 4.38240 4.39620 4.47703 4.48542 4.55767 4.60347 4.66716 4.72086 4.72820 4.75928 4.84569 4.87728 4.91582 4.95122 4.99962 5.06134 5.07662 5.12399 5.17494 5.27673 5.29821 5.37350 5.40360 5.48954 5.49359 5.57600 5.63563 5.89350 5.99536 6.04525 6.22529 6.25688 6.60553 6.67455 6.82654 7.22895 8.76389 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.002013 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.464365 B =13903.639314 C =14859.381355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.112 4.112 4 C 0.055 3.945 5 N -0.548 5.548 6 C 0.014 3.986 7 C 0.048 3.952 8 C 0.123 3.877 9 N -0.685 5.685 10 C 0.524 3.476 11 O -0.514 6.514 12 C 0.488 3.512 13 O -0.562 6.562 14 N -0.574 5.574 15 C 0.050 3.950 16 C -0.122 4.122 17 C -0.099 4.099 18 C 0.004 3.996 19 H 0.016 0.984 20 C -0.513 4.513 21 H 0.051 0.949 22 C 0.028 3.972 23 N -0.936 5.936 24 Si 0.935 3.065 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.267 1.267 28 C 0.105 3.895 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.418 0.582 46 H 0.077 0.923 47 H 0.160 0.840 48 H 0.102 0.898 49 H 0.053 0.947 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.268 0.732 53 H 0.073 0.927 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.031 -11.012 -11.951 34.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.150 4.150 4 C -0.072 4.072 5 N -0.272 5.272 6 C -0.134 4.134 7 C -0.080 4.080 8 C 0.001 3.999 9 N -0.338 5.338 10 C 0.304 3.696 11 O -0.392 6.392 12 C 0.271 3.729 13 O -0.442 6.442 14 N -0.306 5.306 15 C -0.070 4.070 16 C -0.160 4.160 17 C -0.137 4.137 18 C -0.015 4.015 19 H 0.034 0.966 20 C -0.552 4.552 21 H 0.069 0.931 22 C -0.171 4.171 23 N -0.575 5.575 24 Si 0.763 3.237 25 H -0.200 1.200 26 H -0.218 1.218 27 H -0.192 1.192 28 C -0.017 4.017 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.256 0.744 46 H 0.095 0.905 47 H 0.176 0.824 48 H 0.121 0.879 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.077 0.923 53 H 0.091 0.909 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -30.254 -10.659 -11.466 34.065 hybrid contribution 1.397 -1.572 -0.284 2.122 sum -28.858 -12.231 -11.750 33.473 Atomic orbital electron populations 1.21761 0.95471 1.01878 1.01888 1.21479 0.96236 0.96224 1.02145 1.21585 0.93776 0.97073 1.02527 1.22197 0.96177 0.87624 1.01213 1.61856 1.12317 1.17130 1.35937 1.22582 1.02319 0.99361 0.89092 1.22189 0.88610 0.95006 1.02220 1.21512 0.77380 0.98243 1.02799 1.45676 1.10392 1.08893 1.68819 1.19734 0.87270 0.84727 0.77826 1.90305 1.65482 1.32075 1.51360 1.20547 0.89113 0.84126 0.79106 1.90721 1.67919 1.33780 1.51753 1.48399 1.11807 1.07001 1.63362 1.23415 1.02754 0.82561 0.98266 1.21862 0.95871 1.00492 0.97779 1.21419 0.95139 0.96060 1.01069 1.19427 0.94996 0.94541 0.92544 0.96589 1.21270 0.93708 0.94796 1.45386 0.93097 1.25663 0.94962 1.02013 0.94478 1.69987 1.07127 1.32159 1.48267 0.86093 0.78696 0.81125 0.77740 1.19982 1.21767 1.19214 1.22354 0.79657 1.00484 0.99227 0.92655 0.92409 0.92801 0.91916 0.91916 0.91784 0.91702 0.94421 0.90522 0.95151 0.90158 0.91011 0.93115 0.89303 0.90447 0.90270 0.74423 0.90458 0.82399 0.87928 0.92794 0.92393 0.92151 0.92270 0.90911 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.47 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.11 -1.04 5.15 30.60 0.16 -0.89 16 4 C 0.06 0.57 4.96 86.31 0.43 1.00 16 5 N -0.55 -6.73 4.76 -922.45 -4.39 -11.12 16 6 C 0.01 0.15 9.13 127.69 1.17 1.32 16 7 C 0.05 0.60 5.07 86.30 0.44 1.03 16 8 C 0.12 1.99 5.60 86.38 0.48 2.47 16 9 N -0.69 -14.40 5.55 -464.39 -2.58 -16.98 16 10 C 0.52 14.81 7.78 87.27 0.68 15.49 16 11 O -0.51 -14.92 13.10 -3.26 -0.04 -14.96 16 12 C 0.49 17.73 7.74 87.27 0.68 18.40 16 13 O -0.56 -23.35 15.95 -3.26 -0.05 -23.40 16 14 N -0.57 -21.66 2.97 -820.47 -2.44 -24.10 16 15 C 0.05 1.50 6.27 86.36 0.54 2.04 16 16 C -0.12 -3.70 6.08 30.67 0.19 -3.51 16 17 C -0.10 -3.77 5.11 30.62 0.16 -3.62 16 18 C 0.00 0.21 1.84 -11.46 -0.02 0.19 16 19 H 0.02 0.81 7.21 -2.39 -0.02 0.79 16 20 C -0.51 -29.19 9.15 25.60 0.23 -28.95 16 21 H 0.05 3.12 7.99 -2.91 -0.02 3.09 16 22 C 0.03 1.64 5.45 84.66 0.46 2.10 16 23 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 24 Si 0.93 48.58 24.32 68.60 1.67 50.25 16 25 H -0.27 -14.16 6.91 99.48 0.69 -13.47 16 26 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 27 H -0.27 -13.77 6.54 99.48 0.65 -13.12 16 28 C 0.10 4.71 5.09 86.36 0.44 5.15 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.40 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.59 6.47 -2.39 -0.02 0.57 16 36 H 0.04 0.38 8.12 -2.39 -0.02 0.36 16 37 H 0.08 0.79 7.93 -2.39 -0.02 0.77 16 38 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 0.73 6.30 -2.39 -0.02 0.72 16 40 H 0.07 0.78 6.47 -2.39 -0.02 0.77 16 41 H 0.05 0.58 8.12 -2.38 -0.02 0.56 16 42 H 0.09 1.04 7.93 -2.39 -0.02 1.02 16 43 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.08 1.25 6.55 -2.38 -0.02 1.24 16 45 H 0.42 8.08 7.96 -92.71 -0.74 7.34 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.16 4.52 3.78 -78.75 -0.30 4.22 16 48 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 53 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 54 H 0.06 2.76 2.36 -2.39 -0.01 2.76 16 Total: -1.00 -69.87 410.90 -0.83 -70.71 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -0.22 Total: 16.85 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.92 Total: 10.94 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -9.11 Total: -110.39 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.09 Total: -38.36 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.67 Total: 50.25 kcal Total: -69.87 -0.83 -70.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330412648.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.724 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds