Wall clock time and date at job start Sat Apr 11 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 C 1.53003 * 109.47036 * 119.99758 * 2 1 3 5 5 H 1.09008 * 109.47078 * 300.00136 * 4 2 1 6 6 C 1.52997 * 109.47158 * 59.99912 * 4 2 1 7 7 C 1.52999 * 109.47164 * 185.00128 * 6 4 2 8 8 N 1.46500 * 109.47416 * 180.02562 * 7 6 4 9 9 C 1.34770 * 120.00348 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00076 * 179.97438 * 9 8 7 12 12 H 1.09001 * 109.62974 * 92.35366 * 11 9 8 13 13 C 1.53056 * 109.63303 * 212.74873 * 11 9 8 14 14 C 1.51797 * 110.74341 * 34.78959 * 13 11 9 15 15 C 1.51780 * 113.81197 * 66.80640 * 14 13 11 16 16 C 1.52988 * 110.87883 * 292.99898 * 15 14 13 17 17 N 1.47195 * 108.66525 * 86.46825 * 16 15 14 18 18 C 1.46497 * 119.78596 * 108.04099 * 17 16 15 19 19 C 1.33372 * 120.42595 * 288.03634 * 17 16 15 20 20 O 1.21276 * 119.88972 * 180.28891 * 19 17 16 21 21 N 1.46493 * 109.47052 * 180.02562 * 4 2 1 22 22 C 1.36939 * 119.99991 * 84.99894 * 21 4 2 23 23 H 1.07997 * 120.00006 * 0.02562 * 22 21 4 24 24 C 1.38814 * 120.00126 * 179.97438 * 22 21 4 25 25 N 1.31623 * 119.99674 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00303 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46843 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47361 * 119.99674 * 26 24 22 29 29 H 1.48499 * 109.47057 * 240.00231 * 26 24 22 30 30 H 1.08998 * 109.47234 * 300.00200 * 1 2 3 31 31 H 1.08999 * 109.47006 * 60.00539 * 1 2 3 32 32 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47234 * 239.99800 * 2 1 3 34 34 H 1.08994 * 109.46788 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46802 * 299.99586 * 3 2 1 36 36 H 1.08998 * 109.47291 * 59.99835 * 3 2 1 37 37 H 1.09004 * 109.47026 * 305.00009 * 6 4 2 38 38 H 1.09005 * 109.47238 * 64.99865 * 6 4 2 39 39 H 1.09004 * 109.47052 * 299.99865 * 7 6 4 40 40 H 1.08995 * 109.47285 * 59.99732 * 7 6 4 41 41 H 0.97003 * 119.99809 * 359.97438 * 8 7 6 42 42 H 1.09006 * 109.22480 * 155.11573 * 13 11 9 43 43 H 1.08998 * 109.23062 * 274.46063 * 13 11 9 44 44 H 1.09003 * 108.61485 * 187.92197 * 14 13 11 45 45 H 1.08995 * 108.61405 * 305.82852 * 14 13 11 46 46 H 1.08997 * 109.19489 * 53.35771 * 15 14 13 47 47 H 1.08999 * 109.19351 * 172.68136 * 15 14 13 48 48 H 1.09000 * 109.60306 * 206.22130 * 16 15 14 49 49 H 1.08999 * 109.60711 * 326.54614 * 16 15 14 50 50 H 1.09004 * 109.47631 * 90.00306 * 18 17 16 51 51 H 1.09004 * 109.46966 * 209.99740 * 18 17 16 52 52 H 1.08997 * 109.47367 * 329.99569 * 18 17 16 53 53 H 0.96997 * 120.00447 * 264.99781 * 21 4 2 54 54 H 0.97005 * 119.99879 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 1.9348 -2.8476 2.5568 8 7 1.4470 -4.2290 2.5566 9 6 1.6879 -5.0289 3.6142 10 8 2.3090 -4.6053 4.5659 11 6 1.1856 -6.4498 3.6142 12 1 1.9566 -7.1108 3.2185 13 6 0.8315 -6.8700 5.0428 14 6 0.2669 -5.6973 5.8239 15 6 -1.0798 -5.2147 5.3167 16 6 -0.9486 -4.5992 3.9222 17 7 -1.0552 -5.6732 2.9213 18 6 -2.2604 -5.7812 2.0954 19 6 -0.0617 -6.5485 2.7614 20 8 -0.1577 -7.4264 1.9302 21 7 3.5050 -0.7207 1.2496 22 6 4.1892 0.3543 1.7510 23 1 3.6488 1.2016 2.1467 24 6 5.5773 0.3546 1.7518 25 7 6.2359 -0.6782 1.2701 26 14 6.5107 1.8207 2.4365 27 1 5.5452 2.8436 2.9127 28 1 7.3638 1.3794 3.5690 29 1 7.3649 2.4049 1.3715 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 0.4437 -2.1649 1.1598 38 1 1.9647 -2.7028 0.4075 39 1 3.0211 -2.8464 2.6463 40 1 1.5002 -2.3086 3.3985 41 1 0.9505 -4.5680 1.7953 42 1 0.0905 -7.6687 5.0087 43 1 1.7288 -7.2352 5.5423 44 1 0.1598 -5.9935 6.8674 45 1 0.9741 -4.8697 5.7688 46 1 -1.7693 -6.0578 5.2729 47 1 -1.4736 -4.4651 6.0031 48 1 -1.7467 -3.8734 3.7663 49 1 0.0184 -4.1048 3.8302 50 1 -2.1317 -5.1940 1.1861 51 1 -2.4283 -6.8257 1.8326 52 1 -3.1179 -5.4045 2.6529 53 1 3.9904 -1.4818 0.8947 54 1 7.2059 -0.6782 1.2710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331223574.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:22 Heat of formation + Delta-G solvation = -75.052989 kcal Electronic energy + Delta-G solvation = -32095.164754 eV Core-core repulsion = 28066.666615 eV Total energy + Delta-G solvation = -4028.498138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68614 -40.18697 -39.00386 -37.48742 -36.42093 -35.34231 -34.88798 -33.02016 -32.34582 -31.18631 -29.31445 -27.69444 -27.09224 -26.47619 -25.13714 -24.57975 -22.79724 -22.37217 -21.27044 -20.72625 -20.25328 -19.16294 -18.84264 -17.88425 -17.22959 -17.01456 -16.78965 -16.43107 -16.29102 -15.77155 -15.39724 -15.28159 -15.22240 -14.98788 -14.86493 -14.63010 -14.53315 -14.10909 -13.93970 -13.69418 -13.50217 -13.47830 -13.17690 -12.91833 -12.88594 -12.87869 -12.74605 -12.65142 -12.45745 -12.17508 -11.98369 -11.95271 -11.86604 -11.83390 -11.67501 -11.51264 -11.34770 -11.19530 -11.08964 -10.79607 -10.61111 -10.03347 -9.73570 -8.88767 -7.86796 -5.11288 1.36237 1.39387 1.47064 1.48480 1.56570 1.91694 2.01597 2.60596 3.18782 3.47077 3.48521 3.69349 3.85497 3.89969 3.94211 4.00182 4.11321 4.19387 4.27754 4.29580 4.42928 4.46146 4.49278 4.53407 4.64350 4.68948 4.69916 4.74111 4.81652 4.82973 4.93641 4.97105 4.98560 4.99464 5.04881 5.12794 5.14855 5.20916 5.24519 5.26142 5.34051 5.39907 5.43797 5.46950 5.57536 5.60930 5.72843 5.82054 6.20036 6.33778 6.35791 6.94484 7.06014 7.42435 8.19808 8.40732 9.37182 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003242 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.409792 B = 8633.270994 C = 9790.335030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.138 4.138 4 C 0.181 3.819 5 H 0.046 0.954 6 C -0.121 4.121 7 C 0.134 3.866 8 N -0.718 5.718 9 C 0.528 3.472 10 O -0.552 6.552 11 C -0.126 4.126 12 H 0.135 0.865 13 C -0.088 4.088 14 C -0.157 4.157 15 C -0.131 4.131 16 C 0.073 3.927 17 N -0.595 5.595 18 C 0.077 3.923 19 C 0.520 3.480 20 O -0.574 6.574 21 N -0.731 5.731 22 C -0.208 4.208 23 H 0.077 0.923 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.955 3.045 27 H -0.265 1.265 28 H -0.302 1.302 29 H -0.299 1.299 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.406 0.594 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.116 0.884 49 H 0.086 0.914 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.100 0.900 53 H 0.370 0.630 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.844 -9.358 4.426 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.195 4.195 4 C 0.073 3.927 5 H 0.064 0.936 6 C -0.160 4.160 7 C 0.010 3.990 8 N -0.370 5.370 9 C 0.316 3.684 10 O -0.430 6.430 11 C -0.151 4.151 12 H 0.152 0.848 13 C -0.126 4.126 14 C -0.194 4.194 15 C -0.169 4.169 16 C -0.049 4.049 17 N -0.326 5.326 18 C -0.065 4.065 19 C 0.307 3.693 20 O -0.455 6.455 21 N -0.370 5.370 22 C -0.340 4.340 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.624 5.624 26 Si 0.786 3.214 27 H -0.189 1.189 28 H -0.230 1.230 29 H -0.227 1.227 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.242 0.758 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.134 0.866 49 H 0.103 0.897 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.118 0.882 53 H 0.201 0.799 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.464 -9.287 4.766 24.771 hybrid contribution 1.486 0.299 -0.255 1.537 sum -20.978 -8.988 4.511 23.264 Atomic orbital electron populations 1.21841 0.93540 1.02316 1.01794 1.21655 0.96192 0.96199 0.98791 1.21760 1.01490 0.96322 0.99966 1.20428 0.83086 0.93385 0.95842 0.93604 1.22005 1.02569 0.95696 0.95687 1.21179 0.98608 0.80231 0.98936 1.46312 1.57141 1.13293 1.20275 1.20172 0.78746 0.87160 0.82352 1.90679 1.41226 1.76070 1.35066 1.21999 0.97222 0.95349 1.00485 0.84758 1.21074 1.02538 0.98930 0.90091 1.21627 0.98044 0.99349 1.00339 1.21732 0.97248 1.01868 0.96096 1.22685 1.05660 0.89405 0.87194 1.47803 1.17623 1.29193 1.37975 1.21917 0.86029 1.03142 0.95399 1.20064 0.84980 0.81484 0.82808 1.90728 1.81406 1.36388 1.36954 1.42646 1.01234 1.19794 1.73320 1.19530 0.88873 0.96470 1.29115 0.90507 1.25356 0.97695 0.99982 1.04035 1.69809 1.06144 1.31837 1.54576 0.85322 0.78946 0.80090 0.77051 1.18899 1.22974 1.22689 0.92464 0.92623 0.91170 0.93313 0.93673 0.93288 0.93779 0.87626 0.92010 0.94226 0.91523 0.75801 0.89990 0.89770 0.90494 0.90388 0.90816 0.88984 0.86555 0.89675 0.91388 0.91688 0.88176 0.79857 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.85 71.98 0.64 -2.32 16 2 C -0.11 -3.29 2.69 -10.79 -0.03 -3.31 16 3 C -0.14 -4.73 8.26 71.98 0.59 -4.13 16 4 C 0.18 6.20 2.02 44.99 0.09 6.30 16 5 H 0.05 1.62 8.08 -2.38 -0.02 1.60 16 6 C -0.12 -3.24 4.65 30.59 0.14 -3.10 16 7 C 0.13 4.01 5.36 86.38 0.46 4.47 16 8 N -0.72 -17.80 3.69 -463.06 -1.71 -19.50 16 9 C 0.53 14.19 4.19 87.66 0.37 14.56 16 10 O -0.55 -18.86 13.94 -3.05 -0.04 -18.91 16 11 C -0.13 -2.81 3.10 -12.04 -0.04 -2.85 16 12 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 13 C -0.09 -1.65 5.24 30.22 0.16 -1.50 16 14 C -0.16 -2.84 5.16 29.80 0.15 -2.69 16 15 C -0.13 -1.77 5.74 30.19 0.17 -1.59 16 16 C 0.07 1.03 5.57 86.24 0.48 1.51 16 17 N -0.59 -9.51 2.51 -846.09 -2.12 -11.63 16 18 C 0.08 0.90 10.35 127.77 1.32 2.22 16 19 C 0.52 11.43 5.14 88.10 0.45 11.89 16 20 O -0.57 -16.44 16.60 -3.02 -0.05 -16.49 16 21 N -0.73 -33.96 4.45 -322.94 -1.44 -35.40 16 22 C -0.21 -10.88 7.57 84.03 0.64 -10.25 16 23 H 0.08 3.89 7.40 -2.91 -0.02 3.87 16 24 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 25 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 26 Si 0.95 46.37 29.55 68.60 2.03 48.40 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 29 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.23 6.32 -2.38 -0.02 1.21 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.92 6.01 -2.39 -0.01 1.90 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 2.03 6.17 -2.38 -0.01 2.01 16 38 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.04 1.59 7.75 -2.38 -0.02 1.57 16 40 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 41 H 0.41 8.70 6.99 -92.71 -0.65 8.05 16 42 H 0.08 1.35 7.86 -2.38 -0.02 1.33 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 1.93 4.70 -2.42 -0.01 1.92 16 46 H 0.07 0.90 8.05 -2.39 -0.02 0.89 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.12 1.04 7.92 -2.39 -0.02 1.02 16 49 H 0.09 1.63 3.26 -2.39 -0.01 1.62 16 50 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 51 H 0.06 0.97 7.38 -2.38 -0.02 0.95 16 52 H 0.10 0.61 8.03 -2.39 -0.02 0.59 16 53 H 0.37 19.11 7.80 -92.71 -0.72 18.39 16 54 H 0.24 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -70.90 404.23 2.55 -68.35 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.47 Total: 39.17 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.07 Total: 5.20 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -4.99 Total: -125.72 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.09 Total: -35.40 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -70.90 2.55 -68.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331223574.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.700 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds