Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46846 * 2 1 4 4 C 1.52998 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46759 * 55.00117 * 4 3 2 6 6 C 1.53000 * 109.47102 * 294.99839 * 4 3 2 7 7 C 1.53002 * 109.47065 * 174.99816 * 4 3 2 8 8 C 1.53000 * 109.47080 * 184.99973 * 7 4 3 9 9 N 1.46498 * 109.47183 * 179.97438 * 8 7 4 10 10 C 1.34773 * 120.00190 * 179.97438 * 9 8 7 11 11 O 1.21347 * 120.00072 * 0.02562 * 10 9 8 12 12 C 1.49451 * 120.00185 * 180.02562 * 10 9 8 13 13 O 1.21353 * 119.99796 * 353.52372 * 12 10 9 14 14 N 1.34773 * 119.99850 * 173.52089 * 12 10 9 15 15 C 1.47087 * 120.87989 * 181.26350 * 14 12 10 16 16 C 1.53690 * 108.27665 * 128.75282 * 15 14 12 17 17 N 1.46902 * 109.25701 * 54.08410 * 16 15 14 18 18 C 1.46901 * 111.00143 * 172.60446 * 17 16 15 19 19 C 1.50700 * 109.47288 * 294.30224 * 18 17 16 20 20 H 1.08001 * 119.99637 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00093 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00090 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47368 * 90.00007 * 23 21 19 25 25 H 1.48510 * 109.47165 * 209.99767 * 23 21 19 26 26 H 1.48498 * 109.47263 * 329.99727 * 23 21 19 27 27 C 1.46892 * 111.26854 * 296.75593 * 17 16 15 28 28 C 1.47080 * 120.88348 * 1.53844 * 14 12 10 29 29 H 1.08991 * 109.47689 * 300.00311 * 1 2 3 30 30 H 1.09009 * 109.46915 * 60.00608 * 1 2 3 31 31 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47419 * 240.00166 * 2 1 3 33 33 H 1.09000 * 109.46835 * 119.99264 * 2 1 3 34 34 H 1.09001 * 109.47248 * 59.99379 * 3 2 1 35 35 H 1.08997 * 109.47056 * 299.99748 * 3 2 1 36 36 H 1.09004 * 109.46984 * 179.97438 * 6 4 3 37 37 H 1.08996 * 109.47010 * 299.99770 * 6 4 3 38 38 H 1.09001 * 109.46954 * 60.00440 * 6 4 3 39 39 H 1.08999 * 109.46679 * 304.99890 * 7 4 3 40 40 H 1.08997 * 109.46753 * 64.99858 * 7 4 3 41 41 H 1.08996 * 109.47148 * 300.00289 * 8 7 4 42 42 H 1.08998 * 109.46959 * 60.00035 * 8 7 4 43 43 H 0.96996 * 119.99855 * 0.02562 * 9 8 7 44 44 H 1.08999 * 109.62671 * 248.52775 * 15 14 12 45 45 H 1.09002 * 109.62532 * 9.10017 * 15 14 12 46 46 H 1.08999 * 109.64933 * 294.07824 * 16 15 14 47 47 H 1.08998 * 109.42154 * 173.94624 * 16 15 14 48 48 H 1.08998 * 109.46653 * 54.30099 * 18 17 16 49 49 H 1.09003 * 109.46963 * 174.30164 * 18 17 16 50 50 H 0.96998 * 120.00295 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.49739 * 303.14198 * 27 17 16 52 52 H 1.09002 * 109.49561 * 183.06561 * 27 17 16 53 53 H 1.09000 * 109.62925 * 350.90304 * 28 14 12 54 54 H 1.09000 * 109.62416 * 111.47864 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0794 0.8332 1.3083 7 6 4.0799 2.8797 -0.1251 8 6 5.6048 2.8705 -0.2499 9 7 6.0931 4.2464 -0.3709 10 6 7.4140 4.4845 -0.4929 11 8 8.1989 3.5591 -0.5030 12 6 7.9122 5.8881 -0.6158 13 8 7.1240 6.8044 -0.7241 14 7 9.2369 6.1363 -0.6064 15 6 9.7478 7.5125 -0.6983 16 6 10.7477 7.7330 0.4479 17 7 11.7760 6.6849 0.4021 18 6 12.8478 6.9564 1.3693 19 6 13.5832 8.2084 0.9659 20 1 13.2845 8.7482 0.0795 21 6 14.6373 8.6647 1.7285 22 7 15.2794 9.7571 1.3762 23 14 15.1543 7.7307 3.2614 24 1 16.1776 6.7164 2.9015 25 1 15.7250 8.6800 4.2507 26 1 13.9716 7.0532 3.8507 27 6 11.1919 5.3554 0.6229 28 6 10.2101 5.0377 -0.5098 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 5.1695 0.8329 1.3086 37 1 3.7157 1.4228 2.1498 38 1 3.7161 -0.1905 1.3978 39 1 3.6457 3.3430 -1.0110 40 1 3.7911 3.4464 0.7600 41 1 6.0391 2.4071 0.6359 42 1 5.8935 2.3038 -1.1350 43 1 5.4658 4.9862 -0.3625 44 1 10.2474 7.6543 -1.6566 45 1 8.9211 8.2169 -0.6055 46 1 10.2253 7.6886 1.4035 47 1 11.2184 8.7096 0.3353 48 1 12.4164 7.0920 2.3610 49 1 13.5426 6.1167 1.3869 50 1 16.0212 10.0780 1.9125 51 1 10.6634 5.3439 1.5762 52 1 11.9849 4.6075 0.6374 53 1 9.6893 4.1052 -0.2924 54 1 10.7534 4.9462 -1.4504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338836485.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -88.464330 kcal Electronic energy + Delta-G solvation = -29533.545173 eV Core-core repulsion = 25504.465475 eV Total energy + Delta-G solvation = -4029.079698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.07836 -40.11755 -39.04990 -38.55470 -36.56846 -35.69129 -34.41421 -33.60843 -32.19041 -30.70391 -29.94282 -27.75857 -27.57873 -26.05983 -24.78565 -23.97057 -23.13601 -22.14485 -21.96315 -20.99318 -20.47346 -19.09513 -18.55928 -18.19887 -17.35986 -17.07209 -16.52229 -16.45053 -16.20359 -16.13278 -15.97403 -15.72601 -15.42679 -15.18231 -15.03815 -14.74208 -14.49018 -14.43846 -14.33501 -14.09588 -13.70208 -13.34762 -13.30278 -12.90195 -12.88697 -12.83328 -12.71814 -12.51006 -12.44236 -12.28446 -12.23762 -12.17630 -11.94022 -11.84463 -11.71079 -11.47430 -11.44411 -11.30430 -11.22560 -10.78377 -10.35434 -10.19849 -9.94156 -9.09655 -8.28205 -6.31771 0.25142 1.19938 1.35302 1.36217 1.46512 2.03453 2.34051 2.36772 3.04143 3.15374 3.19746 3.69048 3.90752 3.92950 3.97996 4.00101 4.17464 4.20174 4.27128 4.29627 4.36699 4.40687 4.45898 4.50720 4.58498 4.67595 4.69936 4.77648 4.81214 4.84281 4.87649 4.92445 4.94855 4.95682 5.03308 5.07166 5.10152 5.13377 5.18372 5.20279 5.29624 5.33666 5.41043 5.42984 5.51210 5.57708 5.59346 5.85659 5.97910 6.17947 6.27040 6.59351 6.61513 6.74223 6.85566 7.31931 8.87972 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.001726 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.146125 B =16214.518555 C =16821.847474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.084 4.084 5 H 0.075 0.925 6 C -0.155 4.155 7 C -0.121 4.121 8 C 0.113 3.887 9 N -0.684 5.684 10 C 0.514 3.486 11 O -0.522 6.522 12 C 0.502 3.498 13 O -0.549 6.549 14 N -0.577 5.577 15 C 0.121 3.879 16 C 0.057 3.943 17 N -0.541 5.541 18 C 0.171 3.829 19 C -0.517 4.517 20 H 0.042 0.958 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.283 1.283 26 H -0.254 1.254 27 C 0.039 3.961 28 C 0.070 3.930 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.420 0.580 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.023 0.977 47 H 0.077 0.923 48 H -0.015 1.015 49 H 0.033 0.967 50 H 0.267 0.733 51 H 0.026 0.974 52 H 0.095 0.905 53 H 0.163 0.837 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.232 -20.900 -2.170 36.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.103 4.103 5 H 0.094 0.906 6 C -0.212 4.212 7 C -0.159 4.159 8 C -0.009 4.009 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.401 6.401 12 C 0.285 3.715 13 O -0.428 6.428 14 N -0.309 5.309 15 C -0.001 4.001 16 C -0.072 4.072 17 N -0.265 5.265 18 C 0.044 3.956 19 C -0.555 4.555 20 H 0.061 0.939 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.178 1.178 27 C -0.089 4.089 28 C -0.051 4.051 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.257 0.743 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.003 0.997 49 H 0.052 0.948 50 H 0.076 0.924 51 H 0.044 0.956 52 H 0.113 0.887 53 H 0.178 0.822 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.771 -20.974 -2.650 35.703 hybrid contribution 0.357 0.730 1.387 1.608 sum -28.414 -20.245 -1.263 34.911 Atomic orbital electron populations 1.21789 0.95921 1.01697 1.01784 1.21585 0.95808 0.96907 1.02135 1.21631 0.94092 0.96975 1.02272 1.21046 0.95665 0.94788 0.98836 0.90642 1.21984 1.00989 1.01210 0.97012 1.21839 0.92042 0.98324 1.03721 1.21764 0.95661 0.80605 1.02854 1.45835 1.05902 1.11532 1.70358 1.19922 0.84115 0.88546 0.77860 1.90338 1.53489 1.45661 1.50652 1.20292 0.82894 0.89904 0.78445 1.90724 1.55072 1.46423 1.50545 1.48233 1.05166 1.09338 1.68200 1.21937 0.96711 0.82293 0.99178 1.22337 0.91845 0.96794 0.96238 1.61850 1.10783 1.01854 1.52060 1.19951 0.90230 0.95981 0.89392 1.21240 1.14865 1.08862 1.10565 0.93940 1.25797 0.96060 0.95758 1.01068 1.70042 1.22960 1.24424 1.41211 0.85740 0.79351 0.78820 0.79150 1.18867 1.20844 1.17848 1.22579 0.97769 0.91708 0.96892 1.23371 0.90276 0.92270 0.99210 0.92821 0.92770 0.92705 0.92093 0.91776 0.91902 0.91696 0.92769 0.92619 0.92010 0.90147 0.90483 0.90707 0.90777 0.74285 0.89894 0.88299 0.95906 0.90428 0.99721 0.94847 0.92432 0.95618 0.88723 0.82155 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.13 -0.92 5.69 30.60 0.17 -0.74 16 3 C -0.11 -0.78 4.68 30.60 0.14 -0.64 16 4 C -0.08 -0.61 2.39 -10.79 -0.03 -0.64 16 5 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 6 C -0.15 -1.27 8.70 71.98 0.63 -0.64 16 7 C -0.12 -0.94 4.80 30.59 0.15 -0.79 16 8 C 0.11 1.38 5.43 86.38 0.47 1.85 16 9 N -0.68 -11.29 5.55 -464.43 -2.58 -13.86 16 10 C 0.51 12.00 7.81 87.27 0.68 12.69 16 11 O -0.52 -13.50 13.03 -3.24 -0.04 -13.54 16 12 C 0.50 14.08 7.77 87.27 0.68 14.76 16 13 O -0.55 -16.92 15.95 -3.26 -0.05 -16.97 16 14 N -0.58 -17.37 3.00 -818.62 -2.46 -19.83 16 15 C 0.12 3.91 6.62 86.50 0.57 4.48 16 16 C 0.06 2.20 5.47 86.54 0.47 2.67 16 17 N -0.54 -22.24 4.62 -898.90 -4.15 -26.39 16 18 C 0.17 8.17 3.79 85.56 0.32 8.50 16 19 C -0.52 -29.60 8.96 25.60 0.23 -29.37 16 20 H 0.04 2.69 7.37 -2.91 -0.02 2.67 16 21 C 0.01 0.62 5.47 84.65 0.46 1.09 16 22 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 23 Si 0.95 43.85 27.47 68.60 1.88 45.74 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 27 C 0.04 1.29 5.62 86.38 0.49 1.78 16 28 C 0.07 2.00 6.36 86.35 0.55 2.55 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.05 0.50 6.57 -2.38 -0.02 0.49 16 37 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 1.00 6.57 -2.39 -0.02 0.98 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.42 5.97 7.96 -92.71 -0.74 5.23 16 44 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.10 3.05 7.07 -2.39 -0.02 3.03 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 3.40 6.67 -2.39 -0.02 3.38 16 48 H -0.01 -0.72 7.18 -2.39 -0.02 -0.73 16 49 H 0.03 1.55 7.40 -2.39 -0.02 1.53 16 50 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 51 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 52 H 0.09 2.89 7.99 -2.39 -0.02 2.87 16 53 H 0.16 4.36 3.92 -75.39 -0.30 4.07 16 54 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.22 416.06 -0.59 -68.82 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.20 Total: 17.35 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.70 Total: 17.15 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -8.89 Total: -118.54 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.09 Total: -30.51 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Total: -68.22 -0.59 -68.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338836485.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.645 kcal (2) G-P(sol) polarization free energy of solvation -68.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds